RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 KIFC2Q96AC6 838 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 PRR14Q9BWN1 585 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 ABCC8Q09428 1581 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 DNMBPQ6XZF7 1577 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 MROH2BQ7Z745 1585 aa4.57□□□□□ -1.68
VPS35-209ENST00000568642 CARNS1A5YM72 827 aa4.56□□□□□ -1.68
VPS35-209ENST00000568642 RPIAP49247 311 aa4.56□□□□□ -1.68
VPS35-209ENST00000568642 RASSF7Q02833 373 aa4.56□□□□□ -1.68
VPS35-209ENST00000568642 CCDC102AQ96A19 550 aa4.56□□□□□ -1.68
VPS35-209ENST00000568642 PSMG3-AS1Q96PY0 264 aa4.56□□□□□ -1.68
VPS35-209ENST00000568642 LRP5O75197 1615 aa4.56□□□□□ -1.68
VPS35-209ENST00000568642 SETD1BQ9UPS6 1966 aaKnown RBP4.56□□□□□ -1.68
VPS35-209ENST00000568642 RBM47A0AV96 593 aaKnown RBP4.55□□□□□ -1.68
VPS35-209ENST00000568642 PPP1R15AO75807 674 aaPredicted RBP4.55□□□□□ -1.68
VPS35-209ENST00000568642 KCNA1Q09470 495 aa4.55□□□□□ -1.68
VPS35-209ENST00000568642 NPAS3Q8IXF0 933 aa4.55□□□□□ -1.68
VPS35-209ENST00000568642 CCDC97Q96F63 343 aaPredicted RBP4.55□□□□□ -1.68
VPS35-209ENST00000568642 FER1L4A9Z1Z3 1794 aa4.55□□□□□ -1.68
VPS35-209ENST00000568642 GRIN2BQ13224 1484 aa4.55□□□□□ -1.68
VPS35-209ENST00000568642 RAPGEF6Q8TEU7 1601 aa4.54□□□□□ -1.68
VPS35-209ENST00000568642 MINK1Q8N4C8 1332 aaPredicted RBP4.54□□□□□ -1.68
VPS35-209ENST00000568642 J3QL48 77 aa4.54□□□□□ -1.68
VPS35-209ENST00000568642 IRF6O14896 467 aa4.54□□□□□ -1.68
VPS35-209ENST00000568642 BRD1O95696 1058 aa4.54□□□□□ -1.68
VPS35-209ENST00000568642 HPS1Q92902 700 aa4.54□□□□□ -1.68
VPS35-209ENST00000568642 CWC22Q9HCG8 908 aaKnown RBP4.54□□□□□ -1.68
VPS35-209ENST00000568642 CUL7Q14999 1698 aa4.54□□□□□ -1.68
VPS35-209ENST00000568642 KIAA0556O60303 1618 aa4.54□□□□□ -1.68
VPS35-209ENST00000568642 ACTN4O43707 911 aaKnown RBP4.53□□□□□ -1.68
VPS35-209ENST00000568642 POLA1P09884 1462 aaPredicted RBP4.53□□□□□ -1.68
VPS35-209ENST00000568642 PLB1Q6P1J6 1458 aa4.53□□□□□ -1.68
VPS35-209ENST00000568642 PRG4Q92954 1404 aaPredicted RBP4.53□□□□□ -1.68
VPS35-209ENST00000568642 ARID4BQ4LE39 1312 aaPredicted RBP4.52□□□□□ -1.69
VPS35-209ENST00000568642 RAD54L2Q9Y4B4 1467 aa4.52□□□□□ -1.69
VPS35-209ENST00000568642 TOM1O60784 492 aa4.52□□□□□ -1.69
VPS35-209ENST00000568642 CD2BP2O95400 341 aaKnown RBP4.52□□□□□ -1.69
VPS35-209ENST00000568642 FECHP22830 423 aa4.52□□□□□ -1.69
VPS35-209ENST00000568642 SH3D19Q5HYK7 790 aa4.52□□□□□ -1.69
VPS35-209ENST00000568642 GPAT2Q6NUI2 795 aa4.52□□□□□ -1.69
VPS35-209ENST00000568642 SND1Q7KZF4 910 aaKnown RBP eCLIP4.52□□□□□ -1.69
VPS35-209ENST00000568642 TTC13Q8NBP0 860 aa4.52□□□□□ -1.69
VPS35-209ENST00000568642 PROCA1Q8NCQ7 364 aaPredicted RBP4.52□□□□□ -1.69
VPS35-209ENST00000568642 RBM27Q9P2N5 1060 aaKnown RBP4.52□□□□□ -1.69
VPS35-209ENST00000568642 FCF1Q9Y324 198 aaKnown RBP4.52□□□□□ -1.69
VPS35-209ENST00000568642 SLC4A3P48751 1232 aa4.51□□□□□ -1.69
VPS35-209ENST00000568642 MAP2K5Q13163 448 aa4.51□□□□□ -1.69
VPS35-209ENST00000568642 PADI6Q6TGC4 694 aa4.51□□□□□ -1.69
VPS35-209ENST00000568642 SNIP1Q8TAD8 396 aaKnown RBP4.51□□□□□ -1.69
VPS35-209ENST00000568642 SIRT1Q96EB6 747 aa4.51□□□□□ -1.69
VPS35-209ENST00000568642 EYA1Q99502 592 aa4.51□□□□□ -1.69
VPS35-209ENST00000568642 SNRKQ9NRH2 765 aa4.51□□□□□ -1.69
VPS35-209ENST00000568642 ASXL2Q76L83 1435 aa4.51□□□□□ -1.69
VPS35-209ENST00000568642 GRIN2AQ12879 1464 aa4.5□□□□□ -1.69
VPS35-209ENST00000568642 ZC3H4Q9UPT8 1303 aaKnown RBP4.5□□□□□ -1.69
VPS35-209ENST00000568642 TTC37Q6PGP7 1564 aa4.5□□□□□ -1.69
VPS35-209ENST00000568642 BMP1P13497 986 aa4.5□□□□□ -1.69
VPS35-209ENST00000568642 SKIV2LQ15477 1246 aaKnown RBP4.5□□□□□ -1.69
VPS35-209ENST00000568642 CCDC27Q2M243 656 aa4.5□□□□□ -1.69
VPS35-209ENST00000568642 DNAJC14Q6Y2X3 702 aaPredicted RBP4.5□□□□□ -1.69
VPS35-209ENST00000568642 CERS3Q8IU89 383 aa4.5□□□□□ -1.69
VPS35-209ENST00000568642 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.5□□□□□ -1.69
VPS35-209ENST00000568642 BRPF3Q9ULD4 1205 aa4.5□□□□□ -1.69
VPS35-209ENST00000568642 IVNS1ABPQ9Y6Y0 642 aa4.5□□□□□ -1.69
VPS35-209ENST00000568642 CEP350Q5VT06 3117 aa4.5□□□□□ -1.69
VPS35-209ENST00000568642 ZNF335Q9H4Z2 1342 aaPredicted RBP4.49□□□□□ -1.69
VPS35-209ENST00000568642 NUP160Q12769 1436 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 POM121CA8CG34 1229 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 WNT7AO00755 349 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 NR1I2O75469 434 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 CFHP08603 1231 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 PDIA6Q15084 440 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 TMED8Q6PL24 325 aaPredicted RBP4.49□□□□□ -1.69
VPS35-209ENST00000568642 TRIM46Q7Z4K8 759 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 SCUBE3Q8IX30 993 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 ADAMTS19Q8TE59 1207 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 SPATA32Q96LK8 384 aa4.49□□□□□ -1.69
VPS35-209ENST00000568642 PCMTD1Q96MG8 357 aaPredicted RBP4.49□□□□□ -1.69
VPS35-209ENST00000568642 NPDC1Q9NQX5 325 aaPredicted RBP4.49□□□□□ -1.69
VPS35-209ENST00000568642 EPRSP07814 1512 aaKnown RBP4.48□□□□□ -1.69
VPS35-209ENST00000568642 SPDYE5A6NIY4 337 aa4.48□□□□□ -1.69
VPS35-209ENST00000568642 TMEM88BA6NKF7 163 aa4.48□□□□□ -1.69
VPS35-209ENST00000568642 KMT5BQ4FZB7 885 aa4.48□□□□□ -1.69
VPS35-209ENST00000568642 CFAP70Q5T0N1 1121 aa4.48□□□□□ -1.69
VPS35-209ENST00000568642 GIGYF2Q6Y7W6 1299 aaKnown RBP4.48□□□□□ -1.69
VPS35-209ENST00000568642 TRIM52Q96A61 297 aa4.48□□□□□ -1.69
VPS35-209ENST00000568642 MRGPRX2Q96LB1 330 aa4.48□□□□□ -1.69
VPS35-209ENST00000568642 SPSB2Q99619 263 aa4.48□□□□□ -1.69
VPS35-209ENST00000568642 USTQ9Y2C2 406 aa4.48□□□□□ -1.69
VPS35-209ENST00000568642 UHRF1BP1Q6BDS2 1440 aa4.47□□□□□ -1.69
VPS35-209ENST00000568642 SMARCA5O60264 1052 aaPredicted RBP4.47□□□□□ -1.69
VPS35-209ENST00000568642 C1QTNF8P60827 252 aa4.47□□□□□ -1.69
VPS35-209ENST00000568642 PUS10Q3MIT2 529 aaKnown RBP4.47□□□□□ -1.69
VPS35-209ENST00000568642 ZNF330Q9Y3S2 320 aaPredicted RBP4.47□□□□□ -1.69
VPS35-209ENST00000568642 SOGA1O94964 1423 aa4.46□□□□□ -1.69
VPS35-209ENST00000568642 PATL2C9JE40 543 aaKnown RBP4.46□□□□□ -1.7
VPS35-209ENST00000568642 SLC10A3P09131 477 aa4.46□□□□□ -1.7
VPS35-209ENST00000568642 VSIG8P0DPA2 414 aa4.46□□□□□ -1.7
VPS35-209ENST00000568642 LCE3BQ5TA77 95 aa4.46□□□□□ -1.7
VPS35-209ENST00000568642 GNEQ9Y223 722 aaKnown RBP4.46□□□□□ -1.7
VPS35-209ENST00000568642 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms