RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 ALS2Q96Q42 1657 aa24.95■■□□□ 1.59
CLN3-233ENST00000568452 LMOD2Q6P5Q4 547 aa24.95■■□□□ 1.58
CLN3-233ENST00000568452 PHF23Q9BUL5 403 aaPredicted RBP24.95■■□□□ 1.58
CLN3-233ENST00000568452 PRKAR2BP31323 418 aa24.94■■□□□ 1.58
CLN3-233ENST00000568452 CERKQ8TCT0 537 aa24.94■■□□□ 1.58
CLN3-233ENST00000568452 HOXC9P31274 260 aa24.94■■□□□ 1.58
CLN3-233ENST00000568452 RRP7AQ9Y3A4 280 aaKnown RBP24.94■■□□□ 1.58
CLN3-233ENST00000568452 E9PSI1 815 aa24.93■■□□□ 1.58
CLN3-233ENST00000568452 HMOX1P09601 288 aa24.93■■□□□ 1.58
CLN3-233ENST00000568452 TMPOP42166 694 aaKnown RBP24.93■■□□□ 1.58
CLN3-233ENST00000568452 SLFN5Q08AF3 891 aa24.93■■□□□ 1.58
CLN3-233ENST00000568452 NEUROD2Q15784 382 aa24.93■■□□□ 1.58
CLN3-233ENST00000568452 WDR63Q8IWG1 891 aa24.93■■□□□ 1.58
CLN3-233ENST00000568452 PXDNQ92626 1479 aa24.92■■□□□ 1.58
CLN3-233ENST00000568452 TNS3Q68CZ2 1445 aa24.92■■□□□ 1.58
CLN3-233ENST00000568452 GCP02774 474 aa24.91■■□□□ 1.58
CLN3-233ENST00000568452 ARHGEF10O15013 1369 aa24.91■■□□□ 1.58
CLN3-233ENST00000568452 RGPD1P0DJD0 1748 aa24.9■■□□□ 1.58
CLN3-233ENST00000568452 IP6K1Q92551 441 aa24.9■■□□□ 1.58
CLN3-233ENST00000568452 PHRF1Q9P1Y6 1649 aaKnown RBP24.9■■□□□ 1.58
CLN3-233ENST00000568452 LTN1O94822 1766 aa24.89■■□□□ 1.58
CLN3-233ENST00000568452 DUSP27Q5VZP5 1158 aa24.89■■□□□ 1.57
CLN3-233ENST00000568452 TRMT2AQ8IZ69 625 aaKnown RBP24.89■■□□□ 1.57
CLN3-233ENST00000568452 DDX17Q92841 729 aaKnown RBP24.89■■□□□ 1.57
CLN3-233ENST00000568452 SPATA31A3Q5VYP0 1347 aa24.89■■□□□ 1.57
CLN3-233ENST00000568452 TOM1O60784 492 aa24.87■■□□□ 1.57
CLN3-233ENST00000568452 RIPK4P57078 832 aa24.86■■□□□ 1.57
CLN3-233ENST00000568452 SULT6B1Q6IMI4 303 aa24.86■■□□□ 1.57
CLN3-233ENST00000568452 FKBP8Q14318 412 aa24.86■■□□□ 1.57
CLN3-233ENST00000568452 NFE2L2Q16236 605 aa24.86■■□□□ 1.57
CLN3-233ENST00000568452 ARHGEF25Q86VW2 580 aa24.86■■□□□ 1.57
CLN3-233ENST00000568452 RCAN3Q9UKA8 241 aa24.86■■□□□ 1.57
CLN3-233ENST00000568452 SOS2Q07890 1332 aaPredicted RBP24.85■■□□□ 1.57
CLN3-233ENST00000568452 IGSF1Q8N6C5 1336 aa24.85■■□□□ 1.57
CLN3-233ENST00000568452 UBAP1LF5GYI3 381 aa24.83■■□□□ 1.57
CLN3-233ENST00000568452 RNF123Q5XPI4 1314 aa24.83■■□□□ 1.57
CLN3-233ENST00000568452 MED1Q15648 1581 aaPredicted RBP24.83■■□□□ 1.57
CLN3-233ENST00000568452 PHACTR3Q96KR7 559 aa24.83■■□□□ 1.56
CLN3-233ENST00000568452 TRIM35Q9UPQ4 493 aa24.83■■□□□ 1.56
CLN3-233ENST00000568452 KDRP35968 1356 aa24.82■■□□□ 1.56
CLN3-233ENST00000568452 EYA1Q99502 592 aa24.82■■□□□ 1.56
CLN3-233ENST00000568452 IL16Q14005 1332 aa24.82■■□□□ 1.56
CLN3-233ENST00000568452 LMOD3Q0VAK6 560 aa24.81■■□□□ 1.56
CLN3-233ENST00000568452 AEBP1Q8IUX7 1158 aa24.81■■□□□ 1.56
CLN3-233ENST00000568452 SPINK5Q9NQ38 1064 aaPredicted RBP24.81■■□□□ 1.56
CLN3-233ENST00000568452 ZBTB7CA1YPR0 619 aa24.8■■□□□ 1.56
CLN3-233ENST00000568452 MYH16Q9H6N6 1097 aa24.8■■□□□ 1.56
CLN3-233ENST00000568452 NHSL1Q5SYE7 1610 aa24.8■■□□□ 1.56
CLN3-233ENST00000568452 PLEKHG5O94827 1062 aa24.78■■□□□ 1.56
CLN3-233ENST00000568452 CALD1Q05682 793 aaKnown RBP24.78■■□□□ 1.56
CLN3-233ENST00000568452 ERICH6BQ5W0A0 696 aa24.78■■□□□ 1.56
CLN3-233ENST00000568452 PIP4K2BP78356 416 aa24.77■■□□□ 1.56
CLN3-233ENST00000568452 LTV1Q96GA3 475 aaPredicted RBP24.77■■□□□ 1.56
CLN3-233ENST00000568452 ABCC6O95255 1503 aa24.74■■□□□ 1.55
CLN3-233ENST00000568452 ROBO1Q9Y6N7 1651 aa24.74■■□□□ 1.55
CLN3-233ENST00000568452 CRYBG1Q9Y4K1 1723 aa24.74■■□□□ 1.55
CLN3-233ENST00000568452 ZC3H6P61129 1189 aaKnown RBP24.73■■□□□ 1.55
CLN3-233ENST00000568452 RRP1P56182 461 aaKnown RBP24.72■■□□□ 1.55
CLN3-233ENST00000568452 CPDO75976 1380 aa24.72■■□□□ 1.55
CLN3-233ENST00000568452 GAS2L2Q8NHY3 880 aa24.71■■□□□ 1.55
CLN3-233ENST00000568452 CABLES1Q8TDN4 633 aa24.7■■□□□ 1.54
CLN3-233ENST00000568452 ANKRD24Q8TF21 1146 aa24.7■■□□□ 1.54
CLN3-233ENST00000568452 IRX6P78412 446 aaPredicted RBP24.69■■□□□ 1.54
CLN3-233ENST00000568452 DLG5Q8TDM6 1919 aa24.68■■□□□ 1.54
CLN3-233ENST00000568452 NBPF6Q5VWK0 638 aa24.68■■□□□ 1.54
CLN3-233ENST00000568452 NBPF4Q96M43 638 aa24.68■■□□□ 1.54
CLN3-233ENST00000568452 AHDC1Q5TGY3 1603 aaPredicted RBP24.67■■□□□ 1.54
CLN3-233ENST00000568452 CT47B1P0C2W7 299 aaPredicted RBP24.67■■□□□ 1.54
CLN3-233ENST00000568452 FANCIQ9NVI1 1328 aa24.67■■□□□ 1.54
CLN3-233ENST00000568452 NCAPD2Q15021 1401 aa24.66■■□□□ 1.54
CLN3-233ENST00000568452 GNAI1P63096 354 aa24.66■■□□□ 1.54
CLN3-233ENST00000568452 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.66■■□□□ 1.54
CLN3-233ENST00000568452 AXIN2Q9Y2T1 843 aa24.66■■□□□ 1.54
CLN3-233ENST00000568452 HAP1P54257 671 aaPredicted RBP24.65■■□□□ 1.54
CLN3-233ENST00000568452 MTHFSDQ2M296 383 aaKnown RBP24.65■■□□□ 1.54
CLN3-233ENST00000568452 LRRC59Q96AG4 307 aaKnown RBP24.65■■□□□ 1.54
CLN3-233ENST00000568452 IFT57Q9NWB7 429 aa24.65■■□□□ 1.54
CLN3-233ENST00000568452 COL18A1P39060 1754 aa24.65■■□□□ 1.54
CLN3-233ENST00000568452 ERBB3P21860 1342 aa24.65■■□□□ 1.54
CLN3-233ENST00000568452 CAMTA1Q9Y6Y1 1673 aa24.64■■□□□ 1.54
CLN3-233ENST00000568452 KIAA0232Q92628 1395 aa24.64■■□□□ 1.54
CLN3-233ENST00000568452 HTATSF1O43719 755 aaKnown RBP24.64■■□□□ 1.53
CLN3-233ENST00000568452 USHBP1Q8N6Y0 703 aa24.64■■□□□ 1.53
CLN3-233ENST00000568452 RTF1Q92541 710 aaKnown RBP24.62■■□□□ 1.53
CLN3-233ENST00000568452 TSR2Q969E8 191 aaKnown RBP24.61■■□□□ 1.53
CLN3-233ENST00000568452 RGPD5Q99666 1765 aa24.61■■□□□ 1.53
CLN3-233ENST00000568452 ABCA3Q99758 1704 aa24.61■■□□□ 1.53
CLN3-233ENST00000568452 CFAP44Q96MT7 982 aa24.61■■□□□ 1.53
CLN3-233ENST00000568452 THUMPD2Q9BTF0 503 aaKnown RBP24.61■■□□□ 1.53
CLN3-233ENST00000568452 PRDM11Q9NQV5 511 aa24.61■■□□□ 1.53
CLN3-233ENST00000568452 RGPD2P0DJD1 1756 aa24.6■■□□□ 1.53
CLN3-233ENST00000568452 FAM208AQ9UK61 1670 aaKnown RBP24.6■■□□□ 1.53
CLN3-233ENST00000568452 FAM83GA6ND36 823 aa24.6■■□□□ 1.53
CLN3-233ENST00000568452 ZNF853P0CG23 659 aa24.6■■□□□ 1.53
CLN3-233ENST00000568452 EXOSC9Q06265 439 aaKnown RBP24.59■■□□□ 1.53
CLN3-233ENST00000568452 CHRNA2Q15822 529 aa24.59■■□□□ 1.53
CLN3-233ENST00000568452 LAS1LQ9Y4W2 734 aaKnown RBP24.59■■□□□ 1.53
CLN3-233ENST00000568452 PHLPP1O60346 1717 aa24.58■■□□□ 1.53
CLN3-233ENST00000568452 LMO7Q8WWI1 1683 aa24.58■■□□□ 1.53
CLN3-233ENST00000568452 GNAT3A8MTJ3 354 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms