RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 KCTD15Q96SI1 283 aaPredicted RBP6.66□□□□□ -1.34
VPS35-207ENST00000568191 ZNF330Q9Y3S2 320 aaPredicted RBP6.66□□□□□ -1.34
VPS35-207ENST00000568191 SNRPBP14678 240 aaKnown RBP6.65□□□□□ -1.34
VPS35-207ENST00000568191 FBXO31Q5XUX0 539 aaPredicted RBP6.65□□□□□ -1.34
VPS35-207ENST00000568191 ADAM32Q8TC27 787 aa6.65□□□□□ -1.34
VPS35-207ENST00000568191 SLC16A10Q8TF71 515 aa6.65□□□□□ -1.34
VPS35-207ENST00000568191 TREML4Q6UXN2 200 aa6.64□□□□□ -1.35
VPS35-207ENST00000568191 TRIM46Q7Z4K8 759 aa6.64□□□□□ -1.35
VPS35-207ENST00000568191 ITPKCQ96DU7 683 aa6.64□□□□□ -1.35
VPS35-207ENST00000568191 ZFP42Q96MM3 310 aa6.64□□□□□ -1.35
VPS35-207ENST00000568191 TSEN34Q9BSV6 310 aaKnown RBP6.64□□□□□ -1.35
VPS35-207ENST00000568191 HMX1Q9NP08 348 aaPredicted RBP6.64□□□□□ -1.35
VPS35-207ENST00000568191 ZBBXA8MT70 800 aa6.63□□□□□ -1.35
VPS35-207ENST00000568191 WFS1O76024 890 aa6.63□□□□□ -1.35
VPS35-207ENST00000568191 NR3C2P08235 984 aa6.63□□□□□ -1.35
VPS35-207ENST00000568191 BMP2P12643 396 aa6.63□□□□□ -1.35
VPS35-207ENST00000568191 MCCD1P59942 119 aaPredicted RBP6.63□□□□□ -1.35
VPS35-207ENST00000568191 CCDC125Q86Z20 511 aa6.63□□□□□ -1.35
VPS35-207ENST00000568191 PURBQ96QR8 312 aaKnown RBP6.63□□□□□ -1.35
VPS35-207ENST00000568191 KLF16Q9BXK1 252 aaPredicted RBP6.63□□□□□ -1.35
VPS35-207ENST00000568191 ZFAND3Q9H8U3 227 aa6.63□□□□□ -1.35
VPS35-207ENST00000568191 SOCS7O14512 581 aa6.62□□□□□ -1.35
VPS35-207ENST00000568191 MAN1A2O60476 641 aa6.62□□□□□ -1.35
VPS35-207ENST00000568191 EPS8L1Q8TE68 723 aa6.62□□□□□ -1.35
VPS35-207ENST00000568191 TERTO14746 1132 aaKnown RBP6.61□□□□□ -1.35
VPS35-207ENST00000568191 C6orf118Q5T5N4 469 aa6.61□□□□□ -1.35
VPS35-207ENST00000568191 PPP1R26Q5T8A7 1209 aaPredicted RBP6.61□□□□□ -1.35
VPS35-207ENST00000568191 NPAS3Q8IXF0 933 aa6.61□□□□□ -1.35
VPS35-207ENST00000568191 MEIOBQ8N635 442 aa6.61□□□□□ -1.35
VPS35-207ENST00000568191 NDUFB9Q9Y6M9 179 aa6.61□□□□□ -1.35
VPS35-207ENST00000568191 RNF20Q5VTR2 975 aa6.6□□□□□ -1.35
VPS35-207ENST00000568191 SEPT12Q8IYM1 358 aa6.6□□□□□ -1.35
VPS35-207ENST00000568191 LINC00528Q8N1L1 170 aa6.6□□□□□ -1.35
VPS35-207ENST00000568191 TRIM34Q9BYJ4 488 aa6.6□□□□□ -1.35
VPS35-207ENST00000568191 NXF1Q9UBU9 619 aaKnown RBP6.6□□□□□ -1.35
VPS35-207ENST00000568191 PCDHB9Q9Y5E1 797 aa6.6□□□□□ -1.35
VPS35-207ENST00000568191 ESF1Q9H501 851 aaKnown RBP6.59□□□□□ -1.35
VPS35-207ENST00000568191 RAB15P59190 212 aa6.58□□□□□ -1.36
VPS35-207ENST00000568191 INTS6LQ5JSJ4 861 aaKnown RBP6.58□□□□□ -1.36
VPS35-207ENST00000568191 NR1H3Q13133 447 aa6.57□□□□□ -1.36
VPS35-207ENST00000568191 IRF7Q92985 503 aa6.57□□□□□ -1.36
VPS35-207ENST00000568191 GJD4Q96KN9 370 aaPredicted RBP6.57□□□□□ -1.36
VPS35-207ENST00000568191 PRKCSHP14314 528 aaPredicted RBP6.56□□□□□ -1.36
VPS35-207ENST00000568191 Q6ZVU0 165 aa6.56□□□□□ -1.36
VPS35-207ENST00000568191 OCSTAMPQ9BR26 566 aa6.56□□□□□ -1.36
VPS35-207ENST00000568191 TTLL8A6PVC2 850 aa6.55□□□□□ -1.36
VPS35-207ENST00000568191 FBXO45P0C2W1 286 aa6.55□□□□□ -1.36
VPS35-207ENST00000568191 INSM1Q01101 510 aaPredicted RBP6.55□□□□□ -1.36
VPS35-207ENST00000568191 NFX1Q12986 1120 aaKnown RBP6.55□□□□□ -1.36
VPS35-207ENST00000568191 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.55□□□□□ -1.36
VPS35-207ENST00000568191 ESPNB1AK53 854 aa6.54□□□□□ -1.36
VPS35-207ENST00000568191 ERVH48-1M5A8F1 160 aa6.54□□□□□ -1.36
VPS35-207ENST00000568191 CBLBQ13191 982 aa6.54□□□□□ -1.36
VPS35-207ENST00000568191 MTMR14Q8NCE2 650 aa6.54□□□□□ -1.36
VPS35-207ENST00000568191 SNRKQ9NRH2 765 aa6.54□□□□□ -1.36
VPS35-207ENST00000568191 SOS2Q07890 1332 aaPredicted RBP6.53□□□□□ -1.36
VPS35-207ENST00000568191 SPINT1O43278 529 aa6.53□□□□□ -1.36
VPS35-207ENST00000568191 EIF4G2P78344 907 aaKnown RBP eCLIP6.53□□□□□ -1.36
VPS35-207ENST00000568191 RELBQ01201 579 aa6.53□□□□□ -1.36
VPS35-207ENST00000568191 GIGYF1O75420 1035 aaPredicted RBP6.52□□□□□ -1.37
VPS35-207ENST00000568191 WWC1Q8IX03 1113 aa6.52□□□□□ -1.37
VPS35-207ENST00000568191 ZNF784Q8NCA9 323 aaPredicted RBP6.52□□□□□ -1.37
VPS35-207ENST00000568191 POLMQ9NP87 494 aaPredicted RBP6.52□□□□□ -1.37
VPS35-207ENST00000568191 TMPRSS4Q9NRS4 437 aa6.52□□□□□ -1.37
VPS35-207ENST00000568191 H3BM21 787 aa6.51□□□□□ -1.37
VPS35-207ENST00000568191 ADH1AP07327 375 aa6.51□□□□□ -1.37
VPS35-207ENST00000568191 FAM181BA6NEQ2 426 aa6.5□□□□□ -1.37
VPS35-207ENST00000568191 FIGNL2A6NMB9 653 aa6.5□□□□□ -1.37
VPS35-207ENST00000568191 SOBPA7XYQ1 873 aa6.5□□□□□ -1.37
VPS35-207ENST00000568191 WIPF1O43516 503 aa6.5□□□□□ -1.37
VPS35-207ENST00000568191 PTGIRP43119 386 aa6.5□□□□□ -1.37
VPS35-207ENST00000568191 WASHC4Q2M389 1173 aa6.5□□□□□ -1.37
VPS35-207ENST00000568191 AGBL1Q96MI9 1066 aa6.5□□□□□ -1.37
VPS35-207ENST00000568191 CYLDQ9NQC7 956 aa6.5□□□□□ -1.37
VPS35-207ENST00000568191 ATP5J2-PTCD1G3V325 749 aa6.49□□□□□ -1.37
VPS35-207ENST00000568191 MYCP01106 439 aaPredicted RBP6.49□□□□□ -1.37
VPS35-207ENST00000568191 VEGFBP49765 207 aa6.49□□□□□ -1.37
VPS35-207ENST00000568191 LCE2AQ5TA79 106 aaPredicted RBP6.49□□□□□ -1.37
VPS35-207ENST00000568191 CC2D2BQ6DHV5 1058 aa6.49□□□□□ -1.37
VPS35-207ENST00000568191 CYP2U1Q7Z449 544 aa6.49□□□□□ -1.37
VPS35-207ENST00000568191 INSM2Q96T92 566 aaPredicted RBP6.49□□□□□ -1.37
VPS35-207ENST00000568191 ZNF395Q9H8N7 513 aaPredicted RBP6.49□□□□□ -1.37
VPS35-207ENST00000568191 DNMT3LQ9UJW3 386 aa6.49□□□□□ -1.37
VPS35-207ENST00000568191 LILRA1O75019 489 aa6.48□□□□□ -1.37
VPS35-207ENST00000568191 NLRP3Q96P20 1036 aa6.48□□□□□ -1.37
VPS35-207ENST00000568191 TBC1D2BQ9UPU7 963 aa6.48□□□□□ -1.37
VPS35-207ENST00000568191 PCDHB11Q9Y5F2 797 aa6.48□□□□□ -1.37
VPS35-207ENST00000568191 RAD21O60216 631 aa6.47□□□□□ -1.37
VPS35-207ENST00000568191 PPFIA3O75145 1194 aa6.47□□□□□ -1.37
VPS35-207ENST00000568191 SLFNL1Q499Z3 407 aa6.47□□□□□ -1.37
VPS35-207ENST00000568191 STK17AQ9UEE5 414 aa6.47□□□□□ -1.37
VPS35-207ENST00000568191 ADD1P35611 737 aaKnown RBP6.46□□□□□ -1.38
VPS35-207ENST00000568191 SOX11P35716 441 aa6.46□□□□□ -1.38
VPS35-207ENST00000568191 ABL2P42684 1182 aa6.46□□□□□ -1.38
VPS35-207ENST00000568191 CTSOP43234 321 aaPredicted RBP6.46□□□□□ -1.38
VPS35-207ENST00000568191 ERVK-9P63128 1117 aa6.46□□□□□ -1.38
VPS35-207ENST00000568191 PTSQ03393 145 aa6.46□□□□□ -1.38
VPS35-207ENST00000568191 LYSMD3Q7Z3D4 306 aa6.46□□□□□ -1.38
VPS35-207ENST00000568191 SIRT1Q96EB6 747 aa6.46□□□□□ -1.38
VPS35-207ENST00000568191 CEP126Q9P2H0 1117 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms