RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 BRD4O60885 1362 aaPredicted RBP24.72■■□□□ 1.55
CDH3-205ENST00000566808 C1QTNF8P60827 252 aa24.72■■□□□ 1.55
CDH3-205ENST00000566808 FHDC1Q9C0D6 1143 aaPredicted RBP24.72■■□□□ 1.55
CDH3-205ENST00000566808 SYT17Q9BSW7 474 aa24.71■■□□□ 1.55
CDH3-205ENST00000566808 CEP350Q5VT06 3117 aa24.7■■□□□ 1.55
CDH3-205ENST00000566808 PTF1AQ7RTS3 328 aa24.7■■□□□ 1.54
CDH3-205ENST00000566808 PROM2Q8N271 834 aa24.7■■□□□ 1.54
CDH3-205ENST00000566808 STK32BQ9NY57 414 aa24.7■■□□□ 1.54
CDH3-205ENST00000566808 PPIP5K1Q6PFW1 1433 aa24.69■■□□□ 1.54
CDH3-205ENST00000566808 ATF5Q9Y2D1 282 aaPredicted RBP24.69■■□□□ 1.54
CDH3-205ENST00000566808 QRICH2Q9H0J4 1663 aa24.69■■□□□ 1.54
CDH3-205ENST00000566808 MTFR1LQ9H019 292 aa24.68■■□□□ 1.54
CDH3-205ENST00000566808 PIK3C2AO00443 1686 aa24.67■■□□□ 1.54
CDH3-205ENST00000566808 NHSQ6T4R5 1651 aa24.67■■□□□ 1.54
CDH3-205ENST00000566808 TOM1L2Q6ZVM7 507 aa24.67■■□□□ 1.54
CDH3-205ENST00000566808 CDCA7Q9BWT1 371 aaPredicted RBP24.67■■□□□ 1.54
CDH3-205ENST00000566808 MAP3K5Q99683 1374 aa24.67■■□□□ 1.54
CDH3-205ENST00000566808 PAPPAQ13219 1627 aa24.66■■□□□ 1.54
CDH3-205ENST00000566808 SLC15A2Q16348 729 aa24.66■■□□□ 1.54
CDH3-205ENST00000566808 MARCH10Q8NA82 808 aaPredicted RBP24.66■■□□□ 1.54
CDH3-205ENST00000566808 WDR17Q8IZU2 1322 aa24.65■■□□□ 1.54
CDH3-205ENST00000566808 TXNRD1Q16881 649 aa24.65■■□□□ 1.54
CDH3-205ENST00000566808 IFFO2Q5TF58 517 aa24.65■■□□□ 1.54
CDH3-205ENST00000566808 SGIP1Q9BQI5 828 aa24.65■■□□□ 1.54
CDH3-205ENST00000566808 RGPD5Q99666 1765 aa24.65■■□□□ 1.54
CDH3-205ENST00000566808 USP6P35125 1406 aa24.64■■□□□ 1.54
CDH3-205ENST00000566808 ZBTB7CA1YPR0 619 aa24.64■■□□□ 1.54
CDH3-205ENST00000566808 GOLGB1Q14789 3259 aaKnown RBP24.64■■□□□ 1.53
CDH3-205ENST00000566808 CPSF1Q10570 1443 aaKnown RBP24.63■■□□□ 1.53
CDH3-205ENST00000566808 TRPM1Q7Z4N2 1603 aa24.61■■□□□ 1.53
CDH3-205ENST00000566808 RAB3GAP2Q9H2M9 1393 aa24.61■■□□□ 1.53
CDH3-205ENST00000566808 TNS2Q63HR2 1409 aa24.61■■□□□ 1.53
CDH3-205ENST00000566808 NLRP6P59044 892 aa24.59■■□□□ 1.53
CDH3-205ENST00000566808 ARXQ96QS3 562 aa24.59■■□□□ 1.53
CDH3-205ENST00000566808 ABCC6O95255 1503 aa24.58■■□□□ 1.53
CDH3-205ENST00000566808 SRPK2P78362 688 aaKnown RBP24.58■■□□□ 1.53
CDH3-205ENST00000566808 QSER1Q2KHR3 1735 aa24.57■■□□□ 1.52
CDH3-205ENST00000566808 BTAF1O14981 1849 aa24.56■■□□□ 1.52
CDH3-205ENST00000566808 GIGYF1O75420 1035 aaPredicted RBP24.55■■□□□ 1.52
CDH3-205ENST00000566808 CARD10Q9BWT7 1032 aa24.55■■□□□ 1.52
CDH3-205ENST00000566808 COL24A1Q17RW2 1714 aa24.55■■□□□ 1.52
CDH3-205ENST00000566808 AXIN2Q9Y2T1 843 aa24.54■■□□□ 1.52
CDH3-205ENST00000566808 SHANK3Q9BYB0 1731 aa24.54■■□□□ 1.52
CDH3-205ENST00000566808 CCDC7Q96M83 1385 aa24.54■■□□□ 1.52
CDH3-205ENST00000566808 EXOC5O00471 708 aa24.51■■□□□ 1.51
CDH3-205ENST00000566808 CABP2Q9NPB3 220 aa24.51■■□□□ 1.51
CDH3-205ENST00000566808 CENPJQ9HC77 1338 aaPredicted RBP24.51■■□□□ 1.51
CDH3-205ENST00000566808 NFAT5O94916 1531 aa24.51■■□□□ 1.51
CDH3-205ENST00000566808 GPR162Q16538 588 aa24.5■■□□□ 1.51
CDH3-205ENST00000566808 ARHGEF25Q86VW2 580 aa24.5■■□□□ 1.51
CDH3-205ENST00000566808 CSB-PGBD3P0DP91 1061 aa24.49■■□□□ 1.51
CDH3-205ENST00000566808 KCNH5Q8NCM2 988 aa24.48■■□□□ 1.51
CDH3-205ENST00000566808 CABP1Q9NZU7 370 aa24.47■■□□□ 1.51
CDH3-205ENST00000566808 KAT6BQ8WYB5 2073 aa24.47■■□□□ 1.51
CDH3-205ENST00000566808 TUBGCP6Q96RT7 1819 aa24.46■■□□□ 1.51
CDH3-205ENST00000566808 ZNF827Q17R98 1081 aa24.43■■□□□ 1.5
CDH3-205ENST00000566808 NBPF1Q3BBV0 1214 aa24.42■■□□□ 1.5
CDH3-205ENST00000566808 USP54Q70EL1 1684 aa24.41■■□□□ 1.5
CDH3-205ENST00000566808 SLC16A10Q8TF71 515 aa24.41■■□□□ 1.5
CDH3-205ENST00000566808 ACSBG1Q96GR2 724 aa24.41■■□□□ 1.5
CDH3-205ENST00000566808 LTN1O94822 1766 aa24.4■■□□□ 1.5
CDH3-205ENST00000566808 POLD1P28340 1107 aa24.4■■□□□ 1.5
CDH3-205ENST00000566808 TTC21BQ7Z4L5 1316 aa24.39■■□□□ 1.5
CDH3-205ENST00000566808 TTC21AQ8NDW8 1320 aa24.39■■□□□ 1.5
CDH3-205ENST00000566808 SOX12O15370 315 aa24.39■■□□□ 1.49
CDH3-205ENST00000566808 KLHL34Q8N239 644 aa24.39■■□□□ 1.49
CDH3-205ENST00000566808 MON2Q7Z3U7 1717 aa24.38■■□□□ 1.49
CDH3-205ENST00000566808 PELP1Q8IZL8 1130 aaKnown RBP24.37■■□□□ 1.49
CDH3-205ENST00000566808 AKT1S1Q96B36 256 aa24.36■■□□□ 1.49
CDH3-205ENST00000566808 LRRC4BQ9NT99 713 aa24.36■■□□□ 1.49
CDH3-205ENST00000566808 ERBB3P21860 1342 aa24.35■■□□□ 1.49
CDH3-205ENST00000566808 EVC2Q86UK5 1308 aa24.35■■□□□ 1.49
CDH3-205ENST00000566808 ZNF692Q9BU19 519 aaPredicted RBP24.35■■□□□ 1.49
CDH3-205ENST00000566808 LY75O60449 1722 aa24.33■■□□□ 1.49
CDH3-205ENST00000566808 IL2RBP14784 551 aa24.33■■□□□ 1.49
CDH3-205ENST00000566808 SLC27A3Q5K4L6 730 aa24.33■■□□□ 1.49
CDH3-205ENST00000566808 PNPLA7Q6ZV29 1317 aa24.33■■□□□ 1.48
CDH3-205ENST00000566808 FAM208AQ9UK61 1670 aaKnown RBP24.32■■□□□ 1.48
CDH3-205ENST00000566808 NLGN2Q8NFZ4 835 aa24.32■■□□□ 1.48
CDH3-205ENST00000566808 GRIN3BO60391 1043 aa24.31■■□□□ 1.48
CDH3-205ENST00000566808 DOT1LQ8TEK3 1739 aa24.3■■□□□ 1.48
CDH3-205ENST00000566808 NLRP2Q9NX02 1062 aa24.3■■□□□ 1.48
CDH3-205ENST00000566808 ATP10DQ9P241 1426 aa24.29■■□□□ 1.48
CDH3-205ENST00000566808 KTN1Q86UP2 1357 aaKnown RBP24.29■■□□□ 1.48
CDH3-205ENST00000566808 TFCP2L1Q9NZI6 479 aa24.27■■□□□ 1.48
CDH3-205ENST00000566808 YBX3P16989 372 aaKnown RBP eCLIP24.26■■□□□ 1.47
CDH3-205ENST00000566808 USP31Q70CQ4 1352 aa24.26■■□□□ 1.47
CDH3-205ENST00000566808 ADCY9O60503 1353 aa24.22■■□□□ 1.47
CDH3-205ENST00000566808 ANKRD24Q8TF21 1146 aa24.22■■□□□ 1.47
CDH3-205ENST00000566808 ANKRD36BQ8N2N9 1353 aa24.2■■□□□ 1.46
CDH3-205ENST00000566808 HSPA6P17066 643 aa24.2■■□□□ 1.46
CDH3-205ENST00000566808 GPBP1L1Q9HC44 474 aaPredicted RBP24.2■■□□□ 1.46
CDH3-205ENST00000566808 C5P01031 1676 aa24.18■■□□□ 1.46
CDH3-205ENST00000566808 NSD2O96028 1365 aa24.17■■□□□ 1.46
CDH3-205ENST00000566808 KCNQ4P56696 695 aa24.16■■□□□ 1.46
CDH3-205ENST00000566808 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.15■■□□□ 1.46
CDH3-205ENST00000566808 DDX54Q8TDD1 881 aaKnown RBP24.15■■□□□ 1.46
CDH3-205ENST00000566808 SBNO2Q9Y2G9 1366 aa24.15■■□□□ 1.46
CDH3-205ENST00000566808 CD163L1Q9NR16 1453 aa24.14■■□□□ 1.46
CDH3-205ENST00000566808 SYTL4Q96C24 671 aaPredicted RBP24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms