RNA–Protein interactions for RNA: ENST00000566703.1

RNF40-209, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 808 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-209ENST00000566703 USP31Q70CQ4 1352 aa21.27■■□□□ 1
RNF40-209ENST00000566703 PARP4Q9UKK3 1724 aaKnown RBP21.26■□□□□ 0.99
RNF40-209ENST00000566703 TONSLQ96HA7 1378 aa21.26■□□□□ 0.99
RNF40-209ENST00000566703 COL18A1P39060 1754 aa21.26■□□□□ 0.99
RNF40-209ENST00000566703 OVOS2A0A0G2JMS6 1433 aa21.25■□□□□ 0.99
RNF40-209ENST00000566703 OVOS2A0A0J9YW53 1432 aa21.25■□□□□ 0.99
RNF40-209ENST00000566703 OVOS2Q6IE36 1432 aa21.25■□□□□ 0.99
RNF40-209ENST00000566703 AKAP12Q02952 1782 aa21.25■□□□□ 0.99
RNF40-209ENST00000566703 PLSCR1O15162 318 aa21.24■□□□□ 0.99
RNF40-209ENST00000566703 SLC24A1O60721 1099 aa21.24■□□□□ 0.99
RNF40-209ENST00000566703 CSB-PGBD3P0DP91 1061 aa21.24■□□□□ 0.99
RNF40-209ENST00000566703 HDGFL2Q7Z4V5 671 aaPredicted RBP21.24■□□□□ 0.99
RNF40-209ENST00000566703 SOX12O15370 315 aa21.23■□□□□ 0.99
RNF40-209ENST00000566703 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.23■□□□□ 0.99
RNF40-209ENST00000566703 TMC1Q8TDI8 760 aa21.23■□□□□ 0.99
RNF40-209ENST00000566703 BCL11BQ9C0K0 894 aaPredicted RBP21.22■□□□□ 0.99
RNF40-209ENST00000566703 SLC12A5Q9H2X9 1139 aa21.22■□□□□ 0.99
RNF40-209ENST00000566703 TERF2IPQ9NYB0 399 aa21.22■□□□□ 0.99
RNF40-209ENST00000566703 BCL9O00512 1426 aa21.21■□□□□ 0.99
RNF40-209ENST00000566703 SRCAPQ6ZRS2 3230 aa21.21■□□□□ 0.99
RNF40-209ENST00000566703 CCDC7Q96M83 1385 aa21.21■□□□□ 0.99
RNF40-209ENST00000566703 EXOC5O00471 708 aa21.2■□□□□ 0.98
RNF40-209ENST00000566703 MARCH10Q8NA82 808 aaPredicted RBP21.2■□□□□ 0.98
RNF40-209ENST00000566703 NFAT5O94916 1531 aa21.19■□□□□ 0.98
RNF40-209ENST00000566703 ABCC6O95255 1503 aa21.19■□□□□ 0.98
RNF40-209ENST00000566703 NME9Q86XW9 330 aa21.19■□□□□ 0.98
RNF40-209ENST00000566703 CD163L1Q9NR16 1453 aa21.19■□□□□ 0.98
RNF40-209ENST00000566703 EDC4Q6P2E9 1401 aaKnown RBP21.17■□□□□ 0.98
RNF40-209ENST00000566703 PEAK1Q9H792 1746 aa21.17■□□□□ 0.98
RNF40-209ENST00000566703 MON2Q7Z3U7 1717 aa21.16■□□□□ 0.98
RNF40-209ENST00000566703 RREB1Q92766 1687 aa21.15■□□□□ 0.98
RNF40-209ENST00000566703 LRRC37A3O60309 1634 aa21.15■□□□□ 0.98
RNF40-209ENST00000566703 NINLQ9Y2I6 1382 aa21.15■□□□□ 0.98
RNF40-209ENST00000566703 TESK2Q96S53 571 aa21.15■□□□□ 0.98
RNF40-209ENST00000566703 ERBB3P21860 1342 aa21.14■□□□□ 0.97
RNF40-209ENST00000566703 TRIM26Q12899 539 aaPredicted RBP21.14■□□□□ 0.97
RNF40-209ENST00000566703 ST20-MTHFSA0A0A6YYL1 179 aa21.13■□□□□ 0.97
RNF40-209ENST00000566703 A0A1W2PP64 1363 aa21.12■□□□□ 0.97
RNF40-209ENST00000566703 NLRP2Q9NX02 1062 aa21.12■□□□□ 0.97
RNF40-209ENST00000566703 USP54Q70EL1 1684 aa21.12■□□□□ 0.97
RNF40-209ENST00000566703 PTF1AQ7RTS3 328 aa21.11■□□□□ 0.97
RNF40-209ENST00000566703 SPON1Q9HCB6 807 aa21.11■□□□□ 0.97
RNF40-209ENST00000566703 NUP188Q5SRE5 1749 aa21.11■□□□□ 0.97
RNF40-209ENST00000566703 RGPD5Q99666 1765 aa21.1■□□□□ 0.97
RNF40-209ENST00000566703 KCNQ2O43526 872 aa21.1■□□□□ 0.97
RNF40-209ENST00000566703 IL2RBP14784 551 aa21.1■□□□□ 0.97
RNF40-209ENST00000566703 PROM2Q8N271 834 aa21.1■□□□□ 0.97
RNF40-209ENST00000566703 ANKRD24Q8TF21 1146 aa21.1■□□□□ 0.97
RNF40-209ENST00000566703 IP6K1Q92551 441 aa21.09■□□□□ 0.97
RNF40-209ENST00000566703 SBF2Q86WG5 1849 aa21.08■□□□□ 0.97
RNF40-209ENST00000566703 RGPD3A6NKT7 1758 aaPredicted RBP21.08■□□□□ 0.97
RNF40-209ENST00000566703 RGPD4Q7Z3J3 1758 aa21.08■□□□□ 0.97
RNF40-209ENST00000566703 TNS2Q63HR2 1409 aa21.08■□□□□ 0.97
RNF40-209ENST00000566703 WNK3Q9BYP7 1800 aa21.07■□□□□ 0.96
RNF40-209ENST00000566703 TXNRD1Q16881 649 aa21.06■□□□□ 0.96
RNF40-209ENST00000566703 COG3Q96JB2 828 aa21.06■□□□□ 0.96
RNF40-209ENST00000566703 ANO8Q9HCE9 1232 aaPredicted RBP21.05■□□□□ 0.96
RNF40-209ENST00000566703 TMF1P82094 1093 aa21.04■□□□□ 0.96
RNF40-209ENST00000566703 PPP1R1BQ9UD71 204 aaPredicted RBP21.03■□□□□ 0.96
RNF40-209ENST00000566703 ANKRD36BQ8N2N9 1353 aa21.02■□□□□ 0.96
RNF40-209ENST00000566703 CDCA8Q53HL2 280 aa21.01■□□□□ 0.95
RNF40-209ENST00000566703 STK32BQ9NY57 414 aa21.01■□□□□ 0.95
RNF40-209ENST00000566703 AMPHP49418 695 aa21■□□□□ 0.95
RNF40-209ENST00000566703 TIMELESSQ9UNS1 1208 aa21■□□□□ 0.95
RNF40-209ENST00000566703 MAP3K19Q56UN5 1328 aa21■□□□□ 0.95
RNF40-209ENST00000566703 SLC15A2Q16348 729 aa20.99■□□□□ 0.95
RNF40-209ENST00000566703 ACSBG1Q96GR2 724 aa20.99■□□□□ 0.95
RNF40-209ENST00000566703 LTN1O94822 1766 aa20.99■□□□□ 0.95
RNF40-209ENST00000566703 HOXC9P31274 260 aa20.98■□□□□ 0.95
RNF40-209ENST00000566703 USP47Q96K76 1375 aa20.97■□□□□ 0.95
RNF40-209ENST00000566703 FYB1O15117 783 aa20.97■□□□□ 0.95
RNF40-209ENST00000566703 LTV1Q96GA3 475 aaPredicted RBP20.97■□□□□ 0.95
RNF40-209ENST00000566703 DCAF8L1A6NGE4 600 aa20.95■□□□□ 0.94
RNF40-209ENST00000566703 DDX54Q8TDD1 881 aaKnown RBP20.95■□□□□ 0.94
RNF40-209ENST00000566703 FBLN1P23142 703 aa20.94■□□□□ 0.94
RNF40-209ENST00000566703 PDGFDQ9GZP0 370 aaPredicted RBP20.94■□□□□ 0.94
RNF40-209ENST00000566703 NHSQ6T4R5 1651 aa20.93■□□□□ 0.94
RNF40-209ENST00000566703 RTL1A6NKG5 1358 aa20.93■□□□□ 0.94
RNF40-209ENST00000566703 ZBTB7AO95365 584 aa20.92■□□□□ 0.94
RNF40-209ENST00000566703 GGNBP2Q9H3C7 697 aa20.92■□□□□ 0.94
RNF40-209ENST00000566703 CLSPNQ9HAW4 1339 aa20.92■□□□□ 0.94
RNF40-209ENST00000566703 PTGER2P43116 358 aa20.91■□□□□ 0.94
RNF40-209ENST00000566703 SLC27A3Q5K4L6 730 aa20.91■□□□□ 0.94
RNF40-209ENST00000566703 CASZ1Q86V15 1759 aa20.91■□□□□ 0.94
RNF40-209ENST00000566703 ZCRB1Q8TBF4 217 aaKnown RBP20.91■□□□□ 0.94
RNF40-209ENST00000566703 MTFR1LQ9H019 292 aa20.91■□□□□ 0.94
RNF40-209ENST00000566703 FAM208AQ9UK61 1670 aaKnown RBP20.9■□□□□ 0.94
RNF40-209ENST00000566703 CGNL1Q0VF96 1302 aa20.9■□□□□ 0.94
RNF40-209ENST00000566703 ATF5Q9Y2D1 282 aaPredicted RBP20.9■□□□□ 0.94
RNF40-209ENST00000566703 RRS1Q15050 365 aaKnown RBP20.89■□□□□ 0.93
RNF40-209ENST00000566703 KIF24Q5T7B8 1368 aa20.88■□□□□ 0.93
RNF40-209ENST00000566703 LRRC4BQ9NT99 713 aa20.88■□□□□ 0.93
RNF40-209ENST00000566703 PRIM1P49642 420 aaKnown RBP20.87■□□□□ 0.93
RNF40-209ENST00000566703 NBPF6Q5VWK0 638 aa20.87■□□□□ 0.93
RNF40-209ENST00000566703 NBPF4Q96M43 638 aa20.87■□□□□ 0.93
RNF40-209ENST00000566703 SGIP1Q9BQI5 828 aa20.86■□□□□ 0.93
RNF40-209ENST00000566703 INSRP06213 1382 aa20.85■□□□□ 0.93
RNF40-209ENST00000566703 SLC16A10Q8TF71 515 aa20.85■□□□□ 0.93
RNF40-209ENST00000566703 RAPGEF4Q8WZA2 1011 aa20.85■□□□□ 0.93
RNF40-209ENST00000566703 CARD14Q9BXL6 1004 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms