RNA–Protein interactions for RNA: ENST00000565545.1

CSPG4P13-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 13, humanhuman

TSL 5

Gene CSPG4P13, Length 657 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P13-201ENST00000565545 NME9Q86XW9 330 aa25.6■■□□□ 1.69
CSPG4P13-201ENST00000565545 FAM9BQ8IZU0 186 aa25.59■■□□□ 1.69
CSPG4P13-201ENST00000565545 USP31Q70CQ4 1352 aa25.57■■□□□ 1.68
CSPG4P13-201ENST00000565545 PAK3O75914 559 aaPredicted RBP25.57■■□□□ 1.68
CSPG4P13-201ENST00000565545 BAG6P46379 1132 aa25.57■■□□□ 1.68
CSPG4P13-201ENST00000565545 INSRP06213 1382 aa25.56■■□□□ 1.68
CSPG4P13-201ENST00000565545 USP54Q70EL1 1684 aa25.56■■□□□ 1.68
CSPG4P13-201ENST00000565545 BRWD3Q6RI45 1802 aa25.56■■□□□ 1.68
CSPG4P13-201ENST00000565545 AATKQ6ZMQ8 1374 aa25.56■■□□□ 1.68
CSPG4P13-201ENST00000565545 OVOS2A0A0J9YW53 1432 aa25.55■■□□□ 1.68
CSPG4P13-201ENST00000565545 OVOS2Q6IE36 1432 aa25.55■■□□□ 1.68
CSPG4P13-201ENST00000565545 TNNT2P45379 298 aaPredicted RBP25.55■■□□□ 1.68
CSPG4P13-201ENST00000565545 CFAP53Q96M91 514 aa25.55■■□□□ 1.68
CSPG4P13-201ENST00000565545 PLCH1Q4KWH8 1693 aa25.54■■□□□ 1.68
CSPG4P13-201ENST00000565545 NWD2Q9ULI1 1742 aa25.54■■□□□ 1.68
CSPG4P13-201ENST00000565545 MTHFSP49914 203 aa25.53■■□□□ 1.68
CSPG4P13-201ENST00000565545 PIK3C2AO00443 1686 aa25.52■■□□□ 1.68
CSPG4P13-201ENST00000565545 MAP2P11137 1827 aaKnown RBP25.51■■□□□ 1.67
CSPG4P13-201ENST00000565545 PSDA5PKW4 1024 aaPredicted RBP25.51■■□□□ 1.67
CSPG4P13-201ENST00000565545 CENPBP07199 599 aaPredicted RBP25.51■■□□□ 1.67
CSPG4P13-201ENST00000565545 PRDM11Q9NQV5 511 aa25.51■■□□□ 1.67
CSPG4P13-201ENST00000565545 FAM182BQ5T319 152 aa25.49■■□□□ 1.67
CSPG4P13-201ENST00000565545 SPATA31A5Q5VU36 1347 aa25.48■■□□□ 1.67
CSPG4P13-201ENST00000565545 SPATA31A7Q8IWB4 1347 aa25.48■■□□□ 1.67
CSPG4P13-201ENST00000565545 WDR43Q15061 677 aaKnown RBP eCLIP25.48■■□□□ 1.67
CSPG4P13-201ENST00000565545 TRPM3Q9HCF6 1732 aaPredicted RBP25.48■■□□□ 1.67
CSPG4P13-201ENST00000565545 SMG6Q86US8 1419 aaKnown RBP25.47■■□□□ 1.67
CSPG4P13-201ENST00000565545 ABCA3Q99758 1704 aa25.47■■□□□ 1.67
CSPG4P13-201ENST00000565545 EN1Q05925 392 aaPredicted RBP25.47■■□□□ 1.67
CSPG4P13-201ENST00000565545 ABTB2Q8N961 1025 aa25.47■■□□□ 1.67
CSPG4P13-201ENST00000565545 NLRP6P59044 892 aa25.45■■□□□ 1.66
CSPG4P13-201ENST00000565545 POLKQ9UBT6 870 aa25.45■■□□□ 1.66
CSPG4P13-201ENST00000565545 HNRNPUQ00839 825 aaKnown RBP eCLIP25.43■■□□□ 1.66
CSPG4P13-201ENST00000565545 STRN4Q9NRL3 753 aa25.43■■□□□ 1.66
CSPG4P13-201ENST00000565545 COL14A1Q05707 1796 aaKnown RBP25.43■■□□□ 1.66
CSPG4P13-201ENST00000565545 CHRNA2Q15822 529 aa25.42■■□□□ 1.66
CSPG4P13-201ENST00000565545 COL3A1P02461 1466 aaPredicted RBP25.41■■□□□ 1.66
CSPG4P13-201ENST00000565545 NUTM2GQ5VZR2 741 aa25.41■■□□□ 1.66
CSPG4P13-201ENST00000565545 ZC3H6P61129 1189 aaKnown RBP25.4■■□□□ 1.66
CSPG4P13-201ENST00000565545 ADAMTS8Q9UP79 889 aa25.4■■□□□ 1.66
CSPG4P13-201ENST00000565545 NUDCQ9Y266 331 aa25.4■■□□□ 1.66
CSPG4P13-201ENST00000565545 KIAA0232Q92628 1395 aa25.4■■□□□ 1.66
CSPG4P13-201ENST00000565545 NRAPQ86VF7 1730 aa25.4■■□□□ 1.66
CSPG4P13-201ENST00000565545 ALS2Q96Q42 1657 aa25.39■■□□□ 1.66
CSPG4P13-201ENST00000565545 EVA1CP58658 441 aa25.39■■□□□ 1.66
CSPG4P13-201ENST00000565545 SPATA31A1Q5TZJ5 1347 aa25.38■■□□□ 1.65
CSPG4P13-201ENST00000565545 R3HDM1Q15032 1099 aaKnown RBP25.38■■□□□ 1.65
CSPG4P13-201ENST00000565545 KIF24Q5T7B8 1368 aa25.37■■□□□ 1.65
CSPG4P13-201ENST00000565545 USP35Q9P2H5 1018 aa25.37■■□□□ 1.65
CSPG4P13-201ENST00000565545 DIAPH1O60610 1272 aaKnown RBP25.36■■□□□ 1.65
CSPG4P13-201ENST00000565545 FAM196AQ6ZSG2 479 aa25.36■■□□□ 1.65
CSPG4P13-201ENST00000565545 KCNH5Q8NCM2 988 aa25.36■■□□□ 1.65
CSPG4P13-201ENST00000565545 EMILIN1Q9Y6C2 1016 aa25.36■■□□□ 1.65
CSPG4P13-201ENST00000565545 TRIM37O94972 964 aa25.35■■□□□ 1.65
CSPG4P13-201ENST00000565545 ZBED9Q6R2W3 1325 aa25.35■■□□□ 1.65
CSPG4P13-201ENST00000565545 FBLN1P23142 703 aa25.34■■□□□ 1.65
CSPG4P13-201ENST00000565545 RRS1Q15050 365 aaKnown RBP25.34■■□□□ 1.65
CSPG4P13-201ENST00000565545 EZH2Q15910 746 aaKnown RBP25.34■■□□□ 1.65
CSPG4P13-201ENST00000565545 SLIT3O75094 1523 aa25.33■■□□□ 1.65
CSPG4P13-201ENST00000565545 PPM1GO15355 546 aaPredicted RBP25.33■■□□□ 1.65
CSPG4P13-201ENST00000565545 PDE3BQ13370 1112 aa25.32■■□□□ 1.64
CSPG4P13-201ENST00000565545 USP19O94966 1318 aa25.32■■□□□ 1.64
CSPG4P13-201ENST00000565545 LRP5O75197 1615 aa25.31■■□□□ 1.64
CSPG4P13-201ENST00000565545 APBA3O96018 575 aa25.31■■□□□ 1.64
CSPG4P13-201ENST00000565545 NFAT5O94916 1531 aa25.3■■□□□ 1.64
CSPG4P13-201ENST00000565545 MAP3K19Q56UN5 1328 aa25.3■■□□□ 1.64
CSPG4P13-201ENST00000565545 FLT4P35916 1363 aa25.3■■□□□ 1.64
CSPG4P13-201ENST00000565545 PEAK1Q9H792 1746 aa25.29■■□□□ 1.64
CSPG4P13-201ENST00000565545 NGEFQ8N5V2 710 aa25.28■■□□□ 1.64
CSPG4P13-201ENST00000565545 CAMKK2Q96RR4 588 aa25.28■■□□□ 1.64
CSPG4P13-201ENST00000565545 PNNQ9H307 717 aaKnown RBP25.28■■□□□ 1.64
CSPG4P13-201ENST00000565545 RGPD1P0DJD0 1748 aa25.28■■□□□ 1.64
CSPG4P13-201ENST00000565545 RTL1A6NKG5 1358 aa25.28■■□□□ 1.64
CSPG4P13-201ENST00000565545 DISP2A7MBM2 1401 aa25.28■■□□□ 1.64
CSPG4P13-201ENST00000565545 PHRF1Q9P1Y6 1649 aaKnown RBP25.27■■□□□ 1.64
CSPG4P13-201ENST00000565545 THSD7AQ9UPZ6 1657 aa25.27■■□□□ 1.64
CSPG4P13-201ENST00000565545 U2AF1L5P0DN76 240 aaPredicted RBP25.27■■□□□ 1.64
CSPG4P13-201ENST00000565545 IL13P35225 146 aa25.27■■□□□ 1.64
CSPG4P13-201ENST00000565545 U2AF1Q01081 240 aaKnown RBP eCLIP25.27■■□□□ 1.64
CSPG4P13-201ENST00000565545 BARGINQ6ZT62 677 aa25.27■■□□□ 1.64
CSPG4P13-201ENST00000565545 LTN1O94822 1766 aa25.26■■□□□ 1.63
CSPG4P13-201ENST00000565545 SOX12O15370 315 aa25.26■■□□□ 1.63
CSPG4P13-201ENST00000565545 AMPHP49418 695 aa25.26■■□□□ 1.63
CSPG4P13-201ENST00000565545 LARP1Q6PKG0 1096 aaKnown RBP25.26■■□□□ 1.63
CSPG4P13-201ENST00000565545 U2SURPO15042 1029 aaKnown RBP25.25■■□□□ 1.63
CSPG4P13-201ENST00000565545 GCP02774 474 aa25.25■■□□□ 1.63
CSPG4P13-201ENST00000565545 RUNDC1Q96C34 613 aa25.25■■□□□ 1.63
CSPG4P13-201ENST00000565545 CRYBG1Q9Y4K1 1723 aa25.24■■□□□ 1.63
CSPG4P13-201ENST00000565545 TCP11L2Q8N4U5 519 aa25.24■■□□□ 1.63
CSPG4P13-201ENST00000565545 FCHSD2O94868 740 aa25.22■■□□□ 1.63
CSPG4P13-201ENST00000565545 ZBTB7CA1YPR0 619 aa25.21■■□□□ 1.63
CSPG4P13-201ENST00000565545 HOXC9P31274 260 aa25.21■■□□□ 1.63
CSPG4P13-201ENST00000565545 NCBP3Q53F19 620 aaKnown RBP25.21■■□□□ 1.63
CSPG4P13-201ENST00000565545 EIF4A2Q14240 407 aaKnown RBP25.2■■□□□ 1.62
CSPG4P13-201ENST00000565545 HSP90AB2PQ58FF8 381 aa25.2■■□□□ 1.62
CSPG4P13-201ENST00000565545 NBPF14Q5TI25 921 aa25.2■■□□□ 1.62
CSPG4P13-201ENST00000565545 CCDC146Q8IYE0 955 aa25.2■■□□□ 1.62
CSPG4P13-201ENST00000565545 IP6K1Q92551 441 aa25.2■■□□□ 1.62
CSPG4P13-201ENST00000565545 ARHGEF25Q86VW2 580 aa25.19■■□□□ 1.62
CSPG4P13-201ENST00000565545 CPDO75976 1380 aa25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms