RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 EDC4Q6P2E9 1401 aaKnown RBP22.13■■□□□ 1.13
CDH3-204ENST00000565453 WDR17Q8IZU2 1322 aa22.12■■□□□ 1.13
CDH3-204ENST00000565453 ABCC6O95255 1503 aa22.12■■□□□ 1.13
CDH3-204ENST00000565453 SOX12O15370 315 aa22.12■■□□□ 1.13
CDH3-204ENST00000565453 PDE3BQ13370 1112 aa22.12■■□□□ 1.13
CDH3-204ENST00000565453 NME9Q86XW9 330 aa22.12■■□□□ 1.13
CDH3-204ENST00000565453 RGPD5Q99666 1765 aa22.12■■□□□ 1.13
CDH3-204ENST00000565453 EN1Q05925 392 aaPredicted RBP22.11■■□□□ 1.13
CDH3-204ENST00000565453 TOM1L2Q6ZVM7 507 aa22.1■■□□□ 1.13
CDH3-204ENST00000565453 TERF2IPQ9NYB0 399 aa22.1■■□□□ 1.13
CDH3-204ENST00000565453 WNK3Q9BYP7 1800 aa22.1■■□□□ 1.13
CDH3-204ENST00000565453 NINLQ9Y2I6 1382 aa22.1■■□□□ 1.13
CDH3-204ENST00000565453 LRRC37A3O60309 1634 aa22.09■■□□□ 1.13
CDH3-204ENST00000565453 TRIM37O94972 964 aa22.09■■□□□ 1.13
CDH3-204ENST00000565453 SLC24A1O60721 1099 aa22.08■■□□□ 1.13
CDH3-204ENST00000565453 USP47Q96K76 1375 aa22.08■■□□□ 1.12
CDH3-204ENST00000565453 PEAK1Q9H792 1746 aa22.08■■□□□ 1.12
CDH3-204ENST00000565453 OVOS2A0A0J9YW53 1432 aa22.07■■□□□ 1.12
CDH3-204ENST00000565453 OVOS2Q6IE36 1432 aa22.07■■□□□ 1.12
CDH3-204ENST00000565453 CAMKK2Q96RR4 588 aa22.06■■□□□ 1.12
CDH3-204ENST00000565453 CARD10Q9BWT7 1032 aa22.06■■□□□ 1.12
CDH3-204ENST00000565453 CLSPNQ9HAW4 1339 aa22.06■■□□□ 1.12
CDH3-204ENST00000565453 EZH2Q15910 746 aaKnown RBP22.05■■□□□ 1.12
CDH3-204ENST00000565453 TIMELESSQ9UNS1 1208 aa22.05■■□□□ 1.12
CDH3-204ENST00000565453 LTN1O94822 1766 aa22.03■■□□□ 1.12
CDH3-204ENST00000565453 APBA3O96018 575 aa22.02■■□□□ 1.12
CDH3-204ENST00000565453 CSB-PGBD3P0DP91 1061 aa22.02■■□□□ 1.12
CDH3-204ENST00000565453 DDB1Q16531 1140 aa22.02■■□□□ 1.12
CDH3-204ENST00000565453 OVOS2A0A0G2JMS6 1433 aa22.02■■□□□ 1.12
CDH3-204ENST00000565453 ANKRD36BQ8N2N9 1353 aa22.01■■□□□ 1.11
CDH3-204ENST00000565453 PARD3Q8TEW0 1356 aa22.01■■□□□ 1.11
CDH3-204ENST00000565453 C11orf95C9JLR9 678 aaPredicted RBP22.01■■□□□ 1.11
CDH3-204ENST00000565453 CDCA7Q9BWT1 371 aaPredicted RBP22.01■■□□□ 1.11
CDH3-204ENST00000565453 PCGF6Q9BYE7 350 aa22.01■■□□□ 1.11
CDH3-204ENST00000565453 ERBB3P21860 1342 aa22.01■■□□□ 1.11
CDH3-204ENST00000565453 RREB1Q92766 1687 aa22.01■■□□□ 1.11
CDH3-204ENST00000565453 CCDC7Q96M83 1385 aa22■■□□□ 1.11
CDH3-204ENST00000565453 TMF1P82094 1093 aa22■■□□□ 1.11
CDH3-204ENST00000565453 PSDA5PKW4 1024 aaPredicted RBP21.99■■□□□ 1.11
CDH3-204ENST00000565453 MARCH10Q8NA82 808 aaPredicted RBP21.98■■□□□ 1.11
CDH3-204ENST00000565453 SBF2Q86WG5 1849 aa21.98■■□□□ 1.11
CDH3-204ENST00000565453 BCL9O00512 1426 aa21.97■■□□□ 1.11
CDH3-204ENST00000565453 LRP5O75197 1615 aa21.97■■□□□ 1.11
CDH3-204ENST00000565453 NUP188Q5SRE5 1749 aa21.96■■□□□ 1.11
CDH3-204ENST00000565453 ANKRD24Q8TF21 1146 aa21.95■■□□□ 1.1
CDH3-204ENST00000565453 R3HDM1Q15032 1099 aaKnown RBP21.94■■□□□ 1.1
CDH3-204ENST00000565453 TNS2Q63HR2 1409 aa21.94■■□□□ 1.1
CDH3-204ENST00000565453 IP6K1Q92551 441 aa21.93■■□□□ 1.1
CDH3-204ENST00000565453 COG3Q96JB2 828 aa21.93■■□□□ 1.1
CDH3-204ENST00000565453 NLRP2Q9NX02 1062 aa21.93■■□□□ 1.1
CDH3-204ENST00000565453 RGPD3A6NKT7 1758 aaPredicted RBP21.92■■□□□ 1.1
CDH3-204ENST00000565453 RGPD4Q7Z3J3 1758 aa21.92■■□□□ 1.1
CDH3-204ENST00000565453 EXOC5O00471 708 aa21.92■■□□□ 1.1
CDH3-204ENST00000565453 PTF1AQ7RTS3 328 aa21.92■■□□□ 1.1
CDH3-204ENST00000565453 MYOM1P52179 1685 aa21.91■■□□□ 1.1
CDH3-204ENST00000565453 CDCA8Q53HL2 280 aa21.91■■□□□ 1.1
CDH3-204ENST00000565453 MAP3K19Q56UN5 1328 aa21.9■■□□□ 1.1
CDH3-204ENST00000565453 FYB1O15117 783 aa21.9■■□□□ 1.1
CDH3-204ENST00000565453 FBLN1P23142 703 aa21.9■■□□□ 1.1
CDH3-204ENST00000565453 BCL11BQ9C0K0 894 aaPredicted RBP21.9■■□□□ 1.1
CDH3-204ENST00000565453 SRCAPQ6ZRS2 3230 aa21.9■■□□□ 1.1
CDH3-204ENST00000565453 PLSCR1O15162 318 aa21.89■■□□□ 1.09
CDH3-204ENST00000565453 FAM208AQ9UK61 1670 aaKnown RBP21.88■■□□□ 1.09
CDH3-204ENST00000565453 IL2RBP14784 551 aa21.88■■□□□ 1.09
CDH3-204ENST00000565453 HOXC9P31274 260 aa21.87■■□□□ 1.09
CDH3-204ENST00000565453 GGNBP2Q9H3C7 697 aa21.87■■□□□ 1.09
CDH3-204ENST00000565453 KIF20BQ96Q89 1820 aa21.85■■□□□ 1.09
CDH3-204ENST00000565453 CARD14Q9BXL6 1004 aa21.85■■□□□ 1.09
CDH3-204ENST00000565453 RTL1A6NKG5 1358 aa21.85■■□□□ 1.09
CDH3-204ENST00000565453 LTV1Q96GA3 475 aaPredicted RBP21.84■■□□□ 1.09
CDH3-204ENST00000565453 NHSQ6T4R5 1651 aa21.83■■□□□ 1.09
CDH3-204ENST00000565453 AMPHP49418 695 aa21.83■■□□□ 1.09
CDH3-204ENST00000565453 NBPF14Q5TI25 921 aa21.83■■□□□ 1.09
CDH3-204ENST00000565453 RRS1Q15050 365 aaKnown RBP21.82■■□□□ 1.08
CDH3-204ENST00000565453 PROM2Q8N271 834 aa21.82■■□□□ 1.08
CDH3-204ENST00000565453 NSD3Q9BZ95 1437 aa21.81■■□□□ 1.08
CDH3-204ENST00000565453 KCNQ2O43526 872 aa21.81■■□□□ 1.08
CDH3-204ENST00000565453 CCER1Q8TC90 406 aaPredicted RBP21.81■■□□□ 1.08
CDH3-204ENST00000565453 RGPD2P0DJD1 1756 aa21.8■■□□□ 1.08
CDH3-204ENST00000565453 ANO8Q9HCE9 1232 aaPredicted RBP21.78■■□□□ 1.08
CDH3-204ENST00000565453 ACSBG1Q96GR2 724 aa21.77■■□□□ 1.08
CDH3-204ENST00000565453 KIF24Q5T7B8 1368 aa21.76■■□□□ 1.07
CDH3-204ENST00000565453 MEGF6O75095 1541 aa21.75■■□□□ 1.07
CDH3-204ENST00000565453 INSRP06213 1382 aa21.75■■□□□ 1.07
CDH3-204ENST00000565453 SHANK3Q9BYB0 1731 aa21.75■■□□□ 1.07
CDH3-204ENST00000565453 HSPA5P11021 654 aaKnown RBP21.75■■□□□ 1.07
CDH3-204ENST00000565453 EIF4G2P78344 907 aaKnown RBP eCLIP21.75■■□□□ 1.07
CDH3-204ENST00000565453 TXNRD1Q16881 649 aa21.75■■□□□ 1.07
CDH3-204ENST00000565453 NBPF6Q5VWK0 638 aa21.74■■□□□ 1.07
CDH3-204ENST00000565453 NBPF4Q96M43 638 aa21.74■■□□□ 1.07
CDH3-204ENST00000565453 FLT4P35916 1363 aa21.74■■□□□ 1.07
CDH3-204ENST00000565453 BTAF1O14981 1849 aa21.73■■□□□ 1.07
CDH3-204ENST00000565453 HSP90AB2PQ58FF8 381 aa21.73■■□□□ 1.07
CDH3-204ENST00000565453 CASZ1Q86V15 1759 aa21.72■■□□□ 1.07
CDH3-204ENST00000565453 DDX54Q8TDD1 881 aaKnown RBP21.72■■□□□ 1.07
CDH3-204ENST00000565453 ANKRD26Q9UPS8 1709 aa21.72■■□□□ 1.07
CDH3-204ENST00000565453 SMG6Q86US8 1419 aaKnown RBP21.72■■□□□ 1.07
CDH3-204ENST00000565453 EMILIN1Q9Y6C2 1016 aa21.71■■□□□ 1.07
CDH3-204ENST00000565453 USHBP1Q8N6Y0 703 aa21.7■■□□□ 1.06
CDH3-204ENST00000565453 ZCRB1Q8TBF4 217 aaKnown RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms