RNA–Protein interactions for RNA: ENST00000564778.5

SIN3A-205, Transcript of SIN3 transcription regulator family member A, human

TSL 2

Gene SIN3A, Length 617 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SIN3A-205	ENST00000564778	SOCS7	O14512	581 aa		13.2	□□□□□ -0.3
SIN3A-205	ENST00000564778	HOXC9	P31274	260 aa		13.2	□□□□□ -0.3
SIN3A-205	ENST00000564778	CABLES1	Q8TDN4	633 aa		13.2	□□□□□ -0.3
SIN3A-205	ENST00000564778	KIAA0232	Q92628	1395 aa		13.2	□□□□□ -0.3
SIN3A-205	ENST00000564778	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.19	□□□□□ -0.3
SIN3A-205	ENST00000564778	NUTM2E	B1AL46	878 aa	Predicted RBP	13.19	□□□□□ -0.3
SIN3A-205	ENST00000564778	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.19	□□□□□ -0.3
SIN3A-205	ENST00000564778	IP6K1	Q92551	441 aa		13.19	□□□□□ -0.3
SIN3A-205	ENST00000564778	RGS17	Q9UGC6	210 aa	Predicted RBP	13.19	□□□□□ -0.3
SIN3A-205	ENST00000564778	CAMTA1	Q9Y6Y1	1673 aa		13.18	□□□□□ -0.3
SIN3A-205	ENST00000564778	PPM1G	O15355	546 aa	Predicted RBP	13.18	□□□□□ -0.3
SIN3A-205	ENST00000564778	DIAPH1	O60610	1272 aa	Known RBP	13.18	□□□□□ -0.3
SIN3A-205	ENST00000564778	IL13	P35225	146 aa		13.18	□□□□□ -0.3
SIN3A-205	ENST00000564778	AMPH	P49418	695 aa		13.18	□□□□□ -0.3
SIN3A-205	ENST00000564778	HSP90AB2P	Q58FF8	381 aa		13.18	□□□□□ -0.3
SIN3A-205	ENST00000564778	COL14A1	Q05707	1796 aa	Known RBP	13.17	□□□□□ -0.3
SIN3A-205	ENST00000564778	ZNF772	Q68DY9	489 aa	Predicted RBP	13.17	□□□□□ -0.3
SIN3A-205	ENST00000564778	FAM208A	Q9UK61	1670 aa	Known RBP	13.17	□□□□□ -0.3
SIN3A-205	ENST00000564778	NCAPD2	Q15021	1401 aa		13.16	□□□□□ -0.3
SIN3A-205	ENST00000564778	ZC3H6	P61129	1189 aa	Known RBP	13.16	□□□□□ -0.3
SIN3A-205	ENST00000564778	EIF4A2	Q14240	407 aa	Known RBP	13.16	□□□□□ -0.3
SIN3A-205	ENST00000564778	NUDC	Q9Y266	331 aa		13.16	□□□□□ -0.3
SIN3A-205	ENST00000564778	RGPD5	Q99666	1765 aa		13.15	□□□□□ -0.3
SIN3A-205	ENST00000564778	WDR43	Q15061	677 aa	Known RBP eCLIP	13.15	□□□□□ -0.3
SIN3A-205	ENST00000564778	PRDM11	Q9NQV5	511 aa		13.15	□□□□□ -0.3
SIN3A-205	ENST00000564778	ERBB3	P21860	1342 aa		13.14	□□□□□ -0.31
SIN3A-205	ENST00000564778	PLEKHG5	O94827	1062 aa		13.14	□□□□□ -0.31
SIN3A-205	ENST00000564778	HAP1	P54257	671 aa	Predicted RBP	13.14	□□□□□ -0.31
SIN3A-205	ENST00000564778	KDR	P35968	1356 aa		13.14	□□□□□ -0.31
SIN3A-205	ENST00000564778	COL5A2	P05997	1499 aa	Predicted RBP	13.14	□□□□□ -0.31
SIN3A-205	ENST00000564778	PLCH1	Q4KWH8	1693 aa		13.14	□□□□□ -0.31
SIN3A-205	ENST00000564778	IGSF1	Q8N6C5	1336 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	POTEA	Q6S8J7	498 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	FAM9B	Q8IZU0	186 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	C8orf37	Q96NL8	207 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	ADAMTS8	Q9UP79	889 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	AXIN2	Q9Y2T1	843 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	NRAP	Q86VF7	1730 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	NWD2	Q9ULI1	1742 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	AFF2	P51816	1311 aa		13.13	□□□□□ -0.31
SIN3A-205	ENST00000564778	ZBTB7C	A1YPR0	619 aa		13.11	□□□□□ -0.31
SIN3A-205	ENST00000564778	ADAMTS2	O95450	1211 aa		13.11	□□□□□ -0.31
SIN3A-205	ENST00000564778	U2AF1L5	P0DN76	240 aa	Predicted RBP	13.11	□□□□□ -0.31
SIN3A-205	ENST00000564778	U2AF1	Q01081	240 aa	Known RBP eCLIP	13.11	□□□□□ -0.31
SIN3A-205	ENST00000564778	CHRNA2	Q15822	529 aa		13.11	□□□□□ -0.31
SIN3A-205	ENST00000564778	ANKRD24	Q8TF21	1146 aa		13.11	□□□□□ -0.31
SIN3A-205	ENST00000564778	SLIT2	O94813	1529 aa		13.11	□□□□□ -0.31
SIN3A-205	ENST00000564778	PLEKHG2	Q9H7P9	1386 aa		13.1	□□□□□ -0.31
SIN3A-205	ENST00000564778	RGPD2	P0DJD1	1756 aa		13.1	□□□□□ -0.31
SIN3A-205	ENST00000564778	FAM83G	A6ND36	823 aa		13.1	□□□□□ -0.31
SIN3A-205	ENST00000564778	U2SURP	O15042	1029 aa	Known RBP	13.1	□□□□□ -0.31
SIN3A-205	ENST00000564778	NGLY1	Q96IV0	654 aa		13.1	□□□□□ -0.31
SIN3A-205	ENST00000564778	RSPH6A	Q9H0K4	717 aa		13.1	□□□□□ -0.31
SIN3A-205	ENST00000564778	FCHSD2	O94868	740 aa		13.09	□□□□□ -0.31
SIN3A-205	ENST00000564778	EYA1	Q99502	592 aa		13.09	□□□□□ -0.31
SIN3A-205	ENST00000564778	WDR17	Q8IZU2	1322 aa		13.09	□□□□□ -0.31
SIN3A-205	ENST00000564778	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.08	□□□□□ -0.32
SIN3A-205	ENST00000564778	PLEKHF1	Q96S99	279 aa		13.08	□□□□□ -0.32
SIN3A-205	ENST00000564778	NBPF6	Q5VWK0	638 aa		13.07	□□□□□ -0.32
SIN3A-205	ENST00000564778	AEBP1	Q8IUX7	1158 aa		13.07	□□□□□ -0.32
SIN3A-205	ENST00000564778	LTV1	Q96GA3	475 aa	Predicted RBP	13.07	□□□□□ -0.32
SIN3A-205	ENST00000564778	NBPF4	Q96M43	638 aa		13.07	□□□□□ -0.32
SIN3A-205	ENST00000564778	PNN	Q9H307	717 aa	Known RBP	13.07	□□□□□ -0.32
SIN3A-205	ENST00000564778	RXRB	P28702	533 aa		13.06	□□□□□ -0.32
SIN3A-205	ENST00000564778	SULT6B1	Q6IMI4	303 aa		13.06	□□□□□ -0.32
SIN3A-205	ENST00000564778	RUNDC1	Q96C34	613 aa		13.06	□□□□□ -0.32
SIN3A-205	ENST00000564778	BTG4	Q9NY30	223 aa		13.06	□□□□□ -0.32
SIN3A-205	ENST00000564778	CRB1	P82279	1406 aa		13.05	□□□□□ -0.32
SIN3A-205	ENST00000564778	HMOX1	P09601	288 aa		13.05	□□□□□ -0.32
SIN3A-205	ENST00000564778	PRKAR2B	P31323	418 aa		13.05	□□□□□ -0.32
SIN3A-205	ENST00000564778	NCBP3	Q53F19	620 aa	Known RBP	13.05	□□□□□ -0.32
SIN3A-205	ENST00000564778	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.05	□□□□□ -0.32
SIN3A-205	ENST00000564778	USP21	Q9UK80	565 aa		13.05	□□□□□ -0.32
SIN3A-205	ENST00000564778	BCL9L	Q86UU0	1499 aa		13.04	□□□□□ -0.32
SIN3A-205	ENST00000564778	CCDC146	Q8IYE0	955 aa		13.04	□□□□□ -0.32
SIN3A-205	ENST00000564778	CARD10	Q9BWT7	1032 aa		13.04	□□□□□ -0.32
SIN3A-205	ENST00000564778	QTRT2	Q9H974	415 aa	Known RBP	13.04	□□□□□ -0.32
SIN3A-205	ENST00000564778	WNK3	Q9BYP7	1800 aa		13.04	□□□□□ -0.32
SIN3A-205	ENST00000564778	PARP4	Q9UKK3	1724 aa	Known RBP	13.03	□□□□□ -0.32
SIN3A-205	ENST00000564778	CSB-PGBD3	P0DP91	1061 aa		13.03	□□□□□ -0.32
SIN3A-205	ENST00000564778	RBM6	P78332	1123 aa	Known RBP	13.03	□□□□□ -0.32
SIN3A-205	ENST00000564778	NGEF	Q8N5V2	710 aa		13.03	□□□□□ -0.32
SIN3A-205	ENST00000564778	TRPC5	Q9UL62	973 aa	Predicted RBP	13.03	□□□□□ -0.32
SIN3A-205	ENST00000564778	ZBED9	Q6R2W3	1325 aa		13.03	□□□□□ -0.32
SIN3A-205	ENST00000564778	MAPK8IP3	Q9UPT6	1336 aa		13.03	□□□□□ -0.32
SIN3A-205	ENST00000564778	MEGF6	O75095	1541 aa		13.03	□□□□□ -0.32
SIN3A-205	ENST00000564778	PKD1L3	Q7Z443	1732 aa		13.02	□□□□□ -0.32
SIN3A-205	ENST00000564778	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.02	□□□□□ -0.33
SIN3A-205	ENST00000564778	LARP1	Q6PKG0	1096 aa	Known RBP	13.02	□□□□□ -0.33
SIN3A-205	ENST00000564778	USHBP1	Q8N6Y0	703 aa		13.02	□□□□□ -0.33
SIN3A-205	ENST00000564778	NLRP2	Q9NX02	1062 aa		13.02	□□□□□ -0.33
SIN3A-205	ENST00000564778	OVOS2	A0A0G2JMS6	1433 aa		13.02	□□□□□ -0.33
SIN3A-205	ENST00000564778	APAF1	O14727	1248 aa		13.01	□□□□□ -0.33
SIN3A-205	ENST00000564778	TOM1L2	Q6ZVM7	507 aa		13.01	□□□□□ -0.33
SIN3A-205	ENST00000564778	TCP11L2	Q8N4U5	519 aa		13.01	□□□□□ -0.33
SIN3A-205	ENST00000564778	PHACTR3	Q96KR7	559 aa		13.01	□□□□□ -0.33
SIN3A-205	ENST00000564778	STRN4	Q9NRL3	753 aa		13.01	□□□□□ -0.33
SIN3A-205	ENST00000564778	DISP2	A7MBM2	1401 aa		13.01	□□□□□ -0.33
SIN3A-205	ENST00000564778	ATRN	O75882	1429 aa		13.01	□□□□□ -0.33
SIN3A-205	ENST00000564778	NEFM	P07197	916 aa		13	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms