RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 TWISTNBQ3B726 338 aaPredicted RBP16.98■□□□□ 0.31
CLK3-215ENST00000564353 SMC5Q8IY18 1101 aa16.98■□□□□ 0.31
CLK3-215ENST00000564353 MIS18AQ9NYP9 233 aa16.98■□□□□ 0.31
CLK3-215ENST00000564353 PNNQ9H307 717 aaKnown RBP16.97■□□□□ 0.31
CLK3-215ENST00000564353 CLTCQ00610 1675 aaKnown RBP16.97■□□□□ 0.31
CLK3-215ENST00000564353 MCM10Q7L590 875 aa16.97■□□□□ 0.31
CLK3-215ENST00000564353 CHD1LQ86WJ1 897 aa16.97■□□□□ 0.31
CLK3-215ENST00000564353 MRPL50Q8N5N7 158 aaKnown RBP16.97■□□□□ 0.31
CLK3-215ENST00000564353 IL16Q14005 1332 aa16.96■□□□□ 0.31
CLK3-215ENST00000564353 ZBTB7BO15156 539 aaPredicted RBP16.96■□□□□ 0.3
CLK3-215ENST00000564353 SULT6B1Q6IMI4 303 aa16.96■□□□□ 0.3
CLK3-215ENST00000564353 ZMYM3Q14202 1370 aa16.95■□□□□ 0.3
CLK3-215ENST00000564353 NUCB1Q02818 461 aa16.95■□□□□ 0.3
CLK3-215ENST00000564353 SIRT2Q8IXJ6 389 aa16.95■□□□□ 0.3
CLK3-215ENST00000564353 A2ML1A8K2U0 1454 aa16.95■□□□□ 0.3
CLK3-215ENST00000564353 CEBPAP49715 358 aaPredicted RBP16.94■□□□□ 0.3
CLK3-215ENST00000564353 SLC26A8Q96RN1 970 aa16.94■□□□□ 0.3
CLK3-215ENST00000564353 KIF13AQ9H1H9 1805 aa16.94■□□□□ 0.3
CLK3-215ENST00000564353 FAM135BQ49AJ0 1406 aa16.94■□□□□ 0.3
CLK3-215ENST00000564353 PPP6R1Q9UPN7 881 aa16.94■□□□□ 0.3
CLK3-215ENST00000564353 RBM42Q9BTD8 480 aaKnown RBP16.93■□□□□ 0.3
CLK3-215ENST00000564353 PRR36Q9H6K5 1346 aa16.93■□□□□ 0.3
CLK3-215ENST00000564353 ALDH1L2Q3SY69 923 aa16.93■□□□□ 0.3
CLK3-215ENST00000564353 CCDC61Q9Y6R9 512 aa16.93■□□□□ 0.3
CLK3-215ENST00000564353 GNAI1P63096 354 aa16.92■□□□□ 0.3
CLK3-215ENST00000564353 HSP90AB2PQ58FF8 381 aa16.92■□□□□ 0.3
CLK3-215ENST00000564353 AGLP35573 1532 aa16.92■□□□□ 0.3
CLK3-215ENST00000564353 C16orf71Q8IYS4 520 aaPredicted RBP16.92■□□□□ 0.3
CLK3-215ENST00000564353 CPS1P31327 1500 aa16.9■□□□□ 0.3
CLK3-215ENST00000564353 FOXO3O43524 673 aa16.9■□□□□ 0.3
CLK3-215ENST00000564353 NCBP3Q53F19 620 aaKnown RBP16.9■□□□□ 0.3
CLK3-215ENST00000564353 CD2BP2O95400 341 aaKnown RBP16.9■□□□□ 0.3
CLK3-215ENST00000564353 HSCBQ8IWL3 235 aa16.9■□□□□ 0.3
CLK3-215ENST00000564353 EIF4A2Q14240 407 aaKnown RBP16.89■□□□□ 0.29
CLK3-215ENST00000564353 NUTM2GQ5VZR2 741 aa16.89■□□□□ 0.29
CLK3-215ENST00000564353 IFT57Q9NWB7 429 aa16.89■□□□□ 0.29
CLK3-215ENST00000564353 VIRMAQ69YN4 1812 aaKnown RBP16.89■□□□□ 0.29
CLK3-215ENST00000564353 OTUD7AQ8TE49 926 aaPredicted RBP16.88■□□□□ 0.29
CLK3-215ENST00000564353 NECTIN2Q92692 538 aa16.88■□□□□ 0.29
CLK3-215ENST00000564353 CFAP44Q96MT7 982 aa16.88■□□□□ 0.29
CLK3-215ENST00000564353 SMARCA5O60264 1052 aaPredicted RBP16.88■□□□□ 0.29
CLK3-215ENST00000564353 MED14O60244 1454 aa16.87■□□□□ 0.29
CLK3-215ENST00000564353 REREQ9P2R6 1566 aa16.87■□□□□ 0.29
CLK3-215ENST00000564353 TBC1D9Q6ZT07 1266 aa16.87■□□□□ 0.29
CLK3-215ENST00000564353 ACEP12821 1306 aa16.86■□□□□ 0.29
CLK3-215ENST00000564353 MAP2P11137 1827 aaKnown RBP16.86■□□□□ 0.29
CLK3-215ENST00000564353 ZNF853P0CG23 659 aa16.86■□□□□ 0.29
CLK3-215ENST00000564353 SLC4A10Q6U841 1118 aa16.86■□□□□ 0.29
CLK3-215ENST00000564353 HSP90AA1P07900 732 aaKnown RBP16.86■□□□□ 0.29
CLK3-215ENST00000564353 EDC4Q6P2E9 1401 aaKnown RBP16.86■□□□□ 0.29
CLK3-215ENST00000564353 SPATA31D1Q6ZQQ2 1576 aa16.85■□□□□ 0.29
CLK3-215ENST00000564353 ROBO2Q9HCK4 1378 aa16.85■□□□□ 0.29
CLK3-215ENST00000564353 HSP90AB1P08238 724 aaKnown RBP16.85■□□□□ 0.29
CLK3-215ENST00000564353 MCM4P33991 863 aa16.85■□□□□ 0.29
CLK3-215ENST00000564353 LTKP29376 864 aa16.85■□□□□ 0.29
CLK3-215ENST00000564353 CPSF1Q10570 1443 aaKnown RBP16.85■□□□□ 0.29
CLK3-215ENST00000564353 F6X3S4 739 aa16.84■□□□□ 0.29
CLK3-215ENST00000564353 CALD1Q05682 793 aaKnown RBP16.84■□□□□ 0.29
CLK3-215ENST00000564353 ATP7BP35670 1465 aa16.83■□□□□ 0.29
CLK3-215ENST00000564353 KIF20BQ96Q89 1820 aa16.83■□□□□ 0.28
CLK3-215ENST00000564353 PANK2Q9BZ23 570 aa16.83■□□□□ 0.28
CLK3-215ENST00000564353 GSPT1P15170 499 aaKnown RBP16.83■□□□□ 0.28
CLK3-215ENST00000564353 TRHP20396 242 aaPredicted RBP16.83■□□□□ 0.28
CLK3-215ENST00000564353 CHMP5Q9NZZ3 219 aa16.83■□□□□ 0.28
CLK3-215ENST00000564353 ABCC4O15439 1325 aa16.82■□□□□ 0.28
CLK3-215ENST00000564353 RBM33Q96EV2 1170 aaKnown RBP16.82■□□□□ 0.28
CLK3-215ENST00000564353 TTC21BQ7Z4L5 1316 aa16.82■□□□□ 0.28
CLK3-215ENST00000564353 LTV1Q96GA3 475 aaPredicted RBP16.82■□□□□ 0.28
CLK3-215ENST00000564353 MEIS3Q99687 375 aa16.82■□□□□ 0.28
CLK3-215ENST00000564353 ANKRD26Q9UPS8 1709 aa16.81■□□□□ 0.28
CLK3-215ENST00000564353 BMP2KLQ5H9B9 411 aa16.81■□□□□ 0.28
CLK3-215ENST00000564353 TSHZ3Q63HK5 1081 aa16.81■□□□□ 0.28
CLK3-215ENST00000564353 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLK3-215ENST00000564353 GCC1Q96CN9 775 aa16.81■□□□□ 0.28
CLK3-215ENST00000564353 SLC4A2P04920 1241 aa16.81■□□□□ 0.28
CLK3-215ENST00000564353 KIF2CQ99661 725 aa16.81■□□□□ 0.28
CLK3-215ENST00000564353 TNRQ92752 1358 aa16.81■□□□□ 0.28
CLK3-215ENST00000564353 TRAK2O60296 914 aa16.8■□□□□ 0.28
CLK3-215ENST00000564353 LMOD3Q0VAK6 560 aa16.8■□□□□ 0.28
CLK3-215ENST00000564353 G2E3Q7L622 706 aa16.8■□□□□ 0.28
CLK3-215ENST00000564353 API5Q9BZZ5 524 aaKnown RBP16.8■□□□□ 0.28
CLK3-215ENST00000564353 ZMYND15Q9H091 742 aa16.79■□□□□ 0.28
CLK3-215ENST00000564353 ARHGAP45Q92619 1136 aa16.79■□□□□ 0.28
CLK3-215ENST00000564353 RBM25P49756 843 aaKnown RBP16.78■□□□□ 0.28
CLK3-215ENST00000564353 C14orf37Q86TY3 774 aa16.78■□□□□ 0.28
CLK3-215ENST00000564353 PLEKHM2Q8IWE5 1019 aa16.78■□□□□ 0.28
CLK3-215ENST00000564353 TNPO1Q92973 898 aaKnown RBP16.78■□□□□ 0.28
CLK3-215ENST00000564353 ZNF428Q96B54 188 aa16.78■□□□□ 0.28
CLK3-215ENST00000564353 ZNF692Q9BU19 519 aaPredicted RBP16.78■□□□□ 0.28
CLK3-215ENST00000564353 PTCH1Q13635 1447 aa16.77■□□□□ 0.28
CLK3-215ENST00000564353 CDK12Q9NYV4 1490 aaPredicted RBP16.77■□□□□ 0.28
CLK3-215ENST00000564353 ZBTB7CA1YPR0 619 aa16.77■□□□□ 0.28
CLK3-215ENST00000564353 MTHFSDQ2M296 383 aaKnown RBP16.77■□□□□ 0.28
CLK3-215ENST00000564353 VSIG10Q8N0Z9 540 aa16.77■□□□□ 0.28
CLK3-215ENST00000564353 NGDNQ8NEJ9 315 aaKnown RBP16.77■□□□□ 0.28
CLK3-215ENST00000564353 MSH6P52701 1360 aa16.77■□□□□ 0.28
CLK3-215ENST00000564353 BRPF1P55201 1214 aaPredicted RBP16.77■□□□□ 0.27
CLK3-215ENST00000564353 MAP3K19Q56UN5 1328 aa16.76■□□□□ 0.27
CLK3-215ENST00000564353 TSPYL4Q9UJ04 414 aa16.76■□□□□ 0.27
CLK3-215ENST00000564353 XRCC6P12956 609 aaKnown RBP eCLIP16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms