RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 OVOS2Q6IE36 1432 aa24.04■■□□□ 1.44
CLN3-211ENST00000564091 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.03■■□□□ 1.44
CLN3-211ENST00000564091 MARCH10Q8NA82 808 aaPredicted RBP24.03■■□□□ 1.44
CLN3-211ENST00000564091 CARD11Q9BXL7 1154 aa24.03■■□□□ 1.44
CLN3-211ENST00000564091 CARD10Q9BWT7 1032 aa24.02■■□□□ 1.44
CLN3-211ENST00000564091 PIK3C2AO00443 1686 aa24.02■■□□□ 1.44
CLN3-211ENST00000564091 CDCA7Q9BWT1 371 aaPredicted RBP24.01■■□□□ 1.43
CLN3-211ENST00000564091 TMC1Q8TDI8 760 aa24■■□□□ 1.43
CLN3-211ENST00000564091 BCL11BQ9C0K0 894 aaPredicted RBP24■■□□□ 1.43
CLN3-211ENST00000564091 PLSCR1O15162 318 aa23.99■■□□□ 1.43
CLN3-211ENST00000564091 NME9Q86XW9 330 aa23.98■■□□□ 1.43
CLN3-211ENST00000564091 SLC12A5Q9H2X9 1139 aa23.97■■□□□ 1.43
CLN3-211ENST00000564091 PARP4Q9UKK3 1724 aaKnown RBP23.97■■□□□ 1.43
CLN3-211ENST00000564091 EXOC5O00471 708 aa23.96■■□□□ 1.43
CLN3-211ENST00000564091 COL18A1P39060 1754 aa23.96■■□□□ 1.43
CLN3-211ENST00000564091 SBNO2Q9Y2G9 1366 aa23.95■■□□□ 1.42
CLN3-211ENST00000564091 PROM2Q8N271 834 aa23.95■■□□□ 1.42
CLN3-211ENST00000564091 ANO8Q9HCE9 1232 aaPredicted RBP23.95■■□□□ 1.42
CLN3-211ENST00000564091 SPON1Q9HCB6 807 aa23.94■■□□□ 1.42
CLN3-211ENST00000564091 USP31Q70CQ4 1352 aa23.93■■□□□ 1.42
CLN3-211ENST00000564091 KCNQ2O43526 872 aa23.93■■□□□ 1.42
CLN3-211ENST00000564091 HDGFL2Q7Z4V5 671 aaPredicted RBP23.93■■□□□ 1.42
CLN3-211ENST00000564091 NFAT5O94916 1531 aa23.93■■□□□ 1.42
CLN3-211ENST00000564091 LRRC37A3O60309 1634 aa23.92■■□□□ 1.42
CLN3-211ENST00000564091 PEAK1Q9H792 1746 aa23.92■■□□□ 1.42
CLN3-211ENST00000564091 RREB1Q92766 1687 aa23.92■■□□□ 1.42
CLN3-211ENST00000564091 CCDC7Q96M83 1385 aa23.91■■□□□ 1.42
CLN3-211ENST00000564091 NLRP2Q9NX02 1062 aa23.91■■□□□ 1.42
CLN3-211ENST00000564091 PPP1R1BQ9UD71 204 aaPredicted RBP23.91■■□□□ 1.42
CLN3-211ENST00000564091 CD163L1Q9NR16 1453 aa23.91■■□□□ 1.42
CLN3-211ENST00000564091 BCL9O00512 1426 aa23.91■■□□□ 1.42
CLN3-211ENST00000564091 TONSLQ96HA7 1378 aa23.91■■□□□ 1.42
CLN3-211ENST00000564091 NUP188Q5SRE5 1749 aa23.9■■□□□ 1.42
CLN3-211ENST00000564091 PDGFDQ9GZP0 370 aaPredicted RBP23.89■■□□□ 1.41
CLN3-211ENST00000564091 ERBB3P21860 1342 aa23.88■■□□□ 1.41
CLN3-211ENST00000564091 TXNRD1Q16881 649 aa23.87■■□□□ 1.41
CLN3-211ENST00000564091 ANKRD24Q8TF21 1146 aa23.87■■□□□ 1.41
CLN3-211ENST00000564091 TERF2IPQ9NYB0 399 aa23.87■■□□□ 1.41
CLN3-211ENST00000564091 AKAP12Q02952 1782 aa23.86■■□□□ 1.41
CLN3-211ENST00000564091 ACSBG1Q96GR2 724 aa23.86■■□□□ 1.41
CLN3-211ENST00000564091 A0A1W2PP64 1363 aa23.85■■□□□ 1.41
CLN3-211ENST00000564091 IL2RBP14784 551 aa23.84■■□□□ 1.41
CLN3-211ENST00000564091 EDC4Q6P2E9 1401 aaKnown RBP23.84■■□□□ 1.41
CLN3-211ENST00000564091 ZBTB7AO95365 584 aa23.83■■□□□ 1.41
CLN3-211ENST00000564091 PUS7Q96PZ0 661 aaKnown RBP23.83■■□□□ 1.41
CLN3-211ENST00000564091 TNS2Q63HR2 1409 aa23.83■■□□□ 1.4
CLN3-211ENST00000564091 ST20-MTHFSA0A0A6YYL1 179 aa23.82■■□□□ 1.4
CLN3-211ENST00000564091 TESK2Q96S53 571 aa23.82■■□□□ 1.4
CLN3-211ENST00000564091 STK32BQ9NY57 414 aa23.82■■□□□ 1.4
CLN3-211ENST00000564091 ABCC6O95255 1503 aa23.8■■□□□ 1.4
CLN3-211ENST00000564091 SLC15A2Q16348 729 aa23.8■■□□□ 1.4
CLN3-211ENST00000564091 LTV1Q96GA3 475 aaPredicted RBP23.8■■□□□ 1.4
CLN3-211ENST00000564091 ATF5Q9Y2D1 282 aaPredicted RBP23.79■■□□□ 1.4
CLN3-211ENST00000564091 MON2Q7Z3U7 1717 aa23.79■■□□□ 1.4
CLN3-211ENST00000564091 FBLN1P23142 703 aa23.78■■□□□ 1.4
CLN3-211ENST00000564091 IP6K1Q92551 441 aa23.78■■□□□ 1.4
CLN3-211ENST00000564091 RGPD5Q99666 1765 aa23.78■■□□□ 1.4
CLN3-211ENST00000564091 NINLQ9Y2I6 1382 aa23.77■■□□□ 1.4
CLN3-211ENST00000564091 YY1P25490 414 aa23.76■■□□□ 1.39
CLN3-211ENST00000564091 SBF2Q86WG5 1849 aa23.75■■□□□ 1.39
CLN3-211ENST00000564091 PTGER2P43116 358 aa23.75■■□□□ 1.39
CLN3-211ENST00000564091 COG3Q96JB2 828 aa23.75■■□□□ 1.39
CLN3-211ENST00000564091 DDX54Q8TDD1 881 aaKnown RBP23.74■■□□□ 1.39
CLN3-211ENST00000564091 WNK3Q9BYP7 1800 aa23.74■■□□□ 1.39
CLN3-211ENST00000564091 RGPD3A6NKT7 1758 aaPredicted RBP23.73■■□□□ 1.39
CLN3-211ENST00000564091 RGPD4Q7Z3J3 1758 aa23.73■■□□□ 1.39
CLN3-211ENST00000564091 DCAF8L1A6NGE4 600 aa23.73■■□□□ 1.39
CLN3-211ENST00000564091 MAP3K19Q56UN5 1328 aa23.72■■□□□ 1.39
CLN3-211ENST00000564091 UTRNP46939 3433 aa23.71■■□□□ 1.39
CLN3-211ENST00000564091 HOXC9P31274 260 aa23.7■■□□□ 1.38
CLN3-211ENST00000564091 AMPHP49418 695 aa23.7■■□□□ 1.38
CLN3-211ENST00000564091 SLC24A1O60721 1099 aa23.69■■□□□ 1.38
CLN3-211ENST00000564091 MTFR1LQ9H019 292 aa23.69■■□□□ 1.38
CLN3-211ENST00000564091 LRRC4BQ9NT99 713 aa23.69■■□□□ 1.38
CLN3-211ENST00000564091 USP54Q70EL1 1684 aa23.69■■□□□ 1.38
CLN3-211ENST00000564091 ZNF827Q17R98 1081 aa23.67■■□□□ 1.38
CLN3-211ENST00000564091 CASZ1Q86V15 1759 aa23.66■■□□□ 1.38
CLN3-211ENST00000564091 RRS1Q15050 365 aaKnown RBP23.66■■□□□ 1.38
CLN3-211ENST00000564091 FHDC1Q9C0D6 1143 aaPredicted RBP23.66■■□□□ 1.38
CLN3-211ENST00000564091 ANKRD36BQ8N2N9 1353 aa23.65■■□□□ 1.38
CLN3-211ENST00000564091 SYTL4Q96C24 671 aaPredicted RBP23.65■■□□□ 1.38
CLN3-211ENST00000564091 SGIP1Q9BQI5 828 aa23.65■■□□□ 1.38
CLN3-211ENST00000564091 SYT17Q9BSW7 474 aa23.65■■□□□ 1.38
CLN3-211ENST00000564091 GGNBP2Q9H3C7 697 aa23.65■■□□□ 1.38
CLN3-211ENST00000564091 FYB1O15117 783 aa23.64■■□□□ 1.37
CLN3-211ENST00000564091 PRIM1P49642 420 aaKnown RBP23.64■■□□□ 1.37
CLN3-211ENST00000564091 TMF1P82094 1093 aa23.64■■□□□ 1.37
CLN3-211ENST00000564091 ZCRB1Q8TBF4 217 aaKnown RBP23.63■■□□□ 1.37
CLN3-211ENST00000564091 NHSQ6T4R5 1651 aa23.63■■□□□ 1.37
CLN3-211ENST00000564091 KCNQ4P56696 695 aa23.62■■□□□ 1.37
CLN3-211ENST00000564091 LTN1O94822 1766 aa23.62■■□□□ 1.37
CLN3-211ENST00000564091 TRIM26Q12899 539 aaPredicted RBP23.61■■□□□ 1.37
CLN3-211ENST00000564091 NBPF6Q5VWK0 638 aa23.61■■□□□ 1.37
CLN3-211ENST00000564091 AKT1S1Q96B36 256 aa23.61■■□□□ 1.37
CLN3-211ENST00000564091 NBPF4Q96M43 638 aa23.61■■□□□ 1.37
CLN3-211ENST00000564091 USP47Q96K76 1375 aa23.61■■□□□ 1.37
CLN3-211ENST00000564091 SLC27A3Q5K4L6 730 aa23.6■■□□□ 1.37
CLN3-211ENST00000564091 USHBP1Q8N6Y0 703 aa23.6■■□□□ 1.37
CLN3-211ENST00000564091 ARXQ96QS3 562 aa23.6■■□□□ 1.37
CLN3-211ENST00000564091 MEGF6O75095 1541 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms