RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ANKRD36BQ8N2N9 1353 aa11.95□□□□□ -0.5
VPS39-207ENST00000563692 CGNL1Q0VF96 1302 aa11.95□□□□□ -0.5
VPS39-207ENST00000563692 SPATA31A1Q5TZJ5 1347 aa11.95□□□□□ -0.5
VPS39-207ENST00000563692 TTC21BQ7Z4L5 1316 aa11.95□□□□□ -0.5
VPS39-207ENST00000563692 PPP2R1AP30153 589 aa11.95□□□□□ -0.5
VPS39-207ENST00000563692 KCNH5Q8NCM2 988 aa11.95□□□□□ -0.5
VPS39-207ENST00000563692 PHRF1Q9P1Y6 1649 aaKnown RBP11.94□□□□□ -0.5
VPS39-207ENST00000563692 MORC1Q86VD1 984 aa11.94□□□□□ -0.5
VPS39-207ENST00000563692 NRAPQ86VF7 1730 aa11.94□□□□□ -0.5
VPS39-207ENST00000563692 CRYBG1Q9Y4K1 1723 aa11.94□□□□□ -0.5
VPS39-207ENST00000563692 SSH2Q76I76 1423 aa11.94□□□□□ -0.5
VPS39-207ENST00000563692 NRKQ7Z2Y5 1582 aa11.93□□□□□ -0.5
VPS39-207ENST00000563692 SOX12O15370 315 aa11.93□□□□□ -0.5
VPS39-207ENST00000563692 LARP1Q6PKG0 1096 aaKnown RBP11.93□□□□□ -0.5
VPS39-207ENST00000563692 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.93□□□□□ -0.5
VPS39-207ENST00000563692 TCP11L2Q8N4U5 519 aa11.93□□□□□ -0.5
VPS39-207ENST00000563692 ZRANB1Q9UGI0 708 aa11.93□□□□□ -0.5
VPS39-207ENST00000563692 NSD3Q9BZ95 1437 aa11.93□□□□□ -0.5
VPS39-207ENST00000563692 MYOM1P52179 1685 aa11.92□□□□□ -0.5
VPS39-207ENST00000563692 PDE3BQ13370 1112 aa11.92□□□□□ -0.5
VPS39-207ENST00000563692 BARGINQ6ZT62 677 aa11.92□□□□□ -0.5
VPS39-207ENST00000563692 THRAP3Q9Y2W1 955 aaKnown RBP11.92□□□□□ -0.5
VPS39-207ENST00000563692 GTF3C3Q9Y5Q9 886 aa11.92□□□□□ -0.5
VPS39-207ENST00000563692 CPSF1Q10570 1443 aaKnown RBP11.92□□□□□ -0.5
VPS39-207ENST00000563692 NSD2O96028 1365 aa11.92□□□□□ -0.5
VPS39-207ENST00000563692 AATKQ6ZMQ8 1374 aa11.92□□□□□ -0.5
VPS39-207ENST00000563692 BAG6P46379 1132 aa11.91□□□□□ -0.5
VPS39-207ENST00000563692 ZBED9Q6R2W3 1325 aa11.9□□□□□ -0.5
VPS39-207ENST00000563692 CSB-PGBD3P0DP91 1061 aa11.9□□□□□ -0.5
VPS39-207ENST00000563692 WDR43Q15061 677 aaKnown RBP eCLIP11.9□□□□□ -0.5
VPS39-207ENST00000563692 TOM1L2Q6ZVM7 507 aa11.9□□□□□ -0.5
VPS39-207ENST00000563692 CAMTA1Q9Y6Y1 1673 aa11.9□□□□□ -0.5
VPS39-207ENST00000563692 SLIT3O75094 1523 aa11.9□□□□□ -0.5
VPS39-207ENST00000563692 INSRP06213 1382 aa11.9□□□□□ -0.5
VPS39-207ENST00000563692 COL5A2P05997 1499 aaPredicted RBP11.89□□□□□ -0.51
VPS39-207ENST00000563692 FAM196AQ6ZSG2 479 aa11.89□□□□□ -0.51
VPS39-207ENST00000563692 ARHGEF25Q86VW2 580 aa11.89□□□□□ -0.51
VPS39-207ENST00000563692 CRB1P82279 1406 aa11.88□□□□□ -0.51
VPS39-207ENST00000563692 EDC4Q6P2E9 1401 aaKnown RBP11.88□□□□□ -0.51
VPS39-207ENST00000563692 DEFB132Q7Z7B7 95 aa11.88□□□□□ -0.51
VPS39-207ENST00000563692 PIK3C2AO00443 1686 aa11.87□□□□□ -0.51
VPS39-207ENST00000563692 EP400Q96L91 3159 aa11.87□□□□□ -0.51
VPS39-207ENST00000563692 FAM182BQ5T319 152 aa11.87□□□□□ -0.51
VPS39-207ENST00000563692 NME9Q86XW9 330 aa11.87□□□□□ -0.51
VPS39-207ENST00000563692 CFAP53Q96M91 514 aa11.87□□□□□ -0.51
VPS39-207ENST00000563692 BRWD3Q6RI45 1802 aa11.87□□□□□ -0.51
VPS39-207ENST00000563692 A0A1W2PP64 1363 aa11.87□□□□□ -0.51
VPS39-207ENST00000563692 WDR17Q8IZU2 1322 aa11.86□□□□□ -0.51
VPS39-207ENST00000563692 CDCA7Q9BWT1 371 aaPredicted RBP11.86□□□□□ -0.51
VPS39-207ENST00000563692 USP31Q70CQ4 1352 aa11.86□□□□□ -0.51
VPS39-207ENST00000563692 LMO7Q8WWI1 1683 aa11.86□□□□□ -0.51
VPS39-207ENST00000563692 THSD7AQ9UPZ6 1657 aa11.86□□□□□ -0.51
VPS39-207ENST00000563692 AKAP12Q02952 1782 aa11.86□□□□□ -0.51
VPS39-207ENST00000563692 TRIM37O94972 964 aa11.85□□□□□ -0.51
VPS39-207ENST00000563692 CD163L1Q9NR16 1453 aa11.84□□□□□ -0.51
VPS39-207ENST00000563692 FYB1O15117 783 aa11.84□□□□□ -0.51
VPS39-207ENST00000563692 TNNT2P45379 298 aaPredicted RBP11.84□□□□□ -0.51
VPS39-207ENST00000563692 DDB1Q16531 1140 aa11.84□□□□□ -0.51
VPS39-207ENST00000563692 COG3Q96JB2 828 aa11.84□□□□□ -0.51
VPS39-207ENST00000563692 AXIN2Q9Y2T1 843 aa11.84□□□□□ -0.51
VPS39-207ENST00000563692 MON2Q7Z3U7 1717 aa11.83□□□□□ -0.52
VPS39-207ENST00000563692 CARD10Q9BWT7 1032 aa11.83□□□□□ -0.52
VPS39-207ENST00000563692 ADAMTS8Q9UP79 889 aa11.83□□□□□ -0.52
VPS39-207ENST00000563692 NFAT5O94916 1531 aa11.82□□□□□ -0.52
VPS39-207ENST00000563692 APBA3O96018 575 aa11.82□□□□□ -0.52
VPS39-207ENST00000563692 NEFLP07196 543 aa11.82□□□□□ -0.52
VPS39-207ENST00000563692 MTHFSP49914 203 aa11.82□□□□□ -0.52
VPS39-207ENST00000563692 EN1Q05925 392 aaPredicted RBP11.82□□□□□ -0.52
VPS39-207ENST00000563692 GGNBP2Q9H3C7 697 aa11.82□□□□□ -0.52
VPS39-207ENST00000563692 NLRP2Q9NX02 1062 aa11.82□□□□□ -0.52
VPS39-207ENST00000563692 ABCC6O95255 1503 aa11.81□□□□□ -0.52
VPS39-207ENST00000563692 NGEFQ8N5V2 710 aa11.81□□□□□ -0.52
VPS39-207ENST00000563692 NUDCQ9Y266 331 aa11.81□□□□□ -0.52
VPS39-207ENST00000563692 OVOS2A0A0G2JMS6 1433 aa11.8□□□□□ -0.52
VPS39-207ENST00000563692 OVOS2A0A0J9YW53 1432 aa11.8□□□□□ -0.52
VPS39-207ENST00000563692 DISP2A7MBM2 1401 aa11.8□□□□□ -0.52
VPS39-207ENST00000563692 OVOS2Q6IE36 1432 aa11.8□□□□□ -0.52
VPS39-207ENST00000563692 EXOC5O00471 708 aa11.8□□□□□ -0.52
VPS39-207ENST00000563692 ERBB3P21860 1342 aa11.8□□□□□ -0.52
VPS39-207ENST00000563692 AMPHP49418 695 aa11.79□□□□□ -0.52
VPS39-207ENST00000563692 ANKRD24Q8TF21 1146 aa11.79□□□□□ -0.52
VPS39-207ENST00000563692 RGPD1P0DJD0 1748 aa11.79□□□□□ -0.52
VPS39-207ENST00000563692 EZH2Q15910 746 aaKnown RBP11.78□□□□□ -0.52
VPS39-207ENST00000563692 IP6K1Q92551 441 aa11.78□□□□□ -0.52
VPS39-207ENST00000563692 PNNQ9H307 717 aaKnown RBP11.78□□□□□ -0.52
VPS39-207ENST00000563692 COL18A1P39060 1754 aa11.77□□□□□ -0.52
VPS39-207ENST00000563692 IL2RBP14784 551 aa11.77□□□□□ -0.53
VPS39-207ENST00000563692 LTV1Q96GA3 475 aaPredicted RBP11.77□□□□□ -0.53
VPS39-207ENST00000563692 SMG6Q86US8 1419 aaKnown RBP11.77□□□□□ -0.53
VPS39-207ENST00000563692 USP54Q70EL1 1684 aa11.76□□□□□ -0.53
VPS39-207ENST00000563692 NBPF14Q5TI25 921 aa11.76□□□□□ -0.53
VPS39-207ENST00000563692 CAMKK2Q96RR4 588 aa11.76□□□□□ -0.53
VPS39-207ENST00000563692 SALL2Q9Y467 1007 aaPredicted RBP11.76□□□□□ -0.53
VPS39-207ENST00000563692 PARP4Q9UKK3 1724 aaKnown RBP11.76□□□□□ -0.53
VPS39-207ENST00000563692 PSDA5PKW4 1024 aaPredicted RBP11.75□□□□□ -0.53
VPS39-207ENST00000563692 MARCH10Q8NA82 808 aaPredicted RBP11.75□□□□□ -0.53
VPS39-207ENST00000563692 BCL11BQ9C0K0 894 aaPredicted RBP11.75□□□□□ -0.53
VPS39-207ENST00000563692 SUPT16HQ9Y5B9 1047 aaKnown RBP11.75□□□□□ -0.53
VPS39-207ENST00000563692 MAP3K19Q56UN5 1328 aa11.75□□□□□ -0.53
VPS39-207ENST00000563692 DIAPH1O60610 1272 aaKnown RBP11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms