RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 A0A0G2JS52 829 aa19.82■□□□□ 0.76
SMPD3-204ENST00000563396 MYT1Q01538 1121 aa19.82■□□□□ 0.76
SMPD3-204ENST00000563396 TERF2IPQ9NYB0 399 aa19.82■□□□□ 0.76
SMPD3-204ENST00000563396 THRAP3Q9Y2W1 955 aaKnown RBP19.82■□□□□ 0.76
SMPD3-204ENST00000563396 DISP2A7MBM2 1401 aa19.82■□□□□ 0.76
SMPD3-204ENST00000563396 FAM208AQ9UK61 1670 aaKnown RBP19.81■□□□□ 0.76
SMPD3-204ENST00000563396 KIF20BQ96Q89 1820 aa19.81■□□□□ 0.76
SMPD3-204ENST00000563396 TMC1Q8TDI8 760 aa19.81■□□□□ 0.76
SMPD3-204ENST00000563396 TCP11L2Q8N4U5 519 aa19.8■□□□□ 0.76
SMPD3-204ENST00000563396 WDR17Q8IZU2 1322 aa19.79■□□□□ 0.76
SMPD3-204ENST00000563396 EVA1CP58658 441 aa19.79■□□□□ 0.76
SMPD3-204ENST00000563396 NME9Q86XW9 330 aa19.78■□□□□ 0.76
SMPD3-204ENST00000563396 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.78■□□□□ 0.76
SMPD3-204ENST00000563396 TMF1P82094 1093 aa19.77■□□□□ 0.76
SMPD3-204ENST00000563396 AXIN2Q9Y2T1 843 aa19.77■□□□□ 0.76
SMPD3-204ENST00000563396 RREB1Q92766 1687 aa19.77■□□□□ 0.76
SMPD3-204ENST00000563396 SBF2Q86WG5 1849 aa19.76■□□□□ 0.75
SMPD3-204ENST00000563396 RGPD3A6NKT7 1758 aaPredicted RBP19.76■□□□□ 0.75
SMPD3-204ENST00000563396 RGPD4Q7Z3J3 1758 aa19.76■□□□□ 0.75
SMPD3-204ENST00000563396 USP35Q9P2H5 1018 aa19.76■□□□□ 0.75
SMPD3-204ENST00000563396 ZRANB1Q9UGI0 708 aa19.76■□□□□ 0.75
SMPD3-204ENST00000563396 ZBTB7CA1YPR0 619 aa19.73■□□□□ 0.75
SMPD3-204ENST00000563396 SF3B2Q13435 895 aaKnown RBP19.73■□□□□ 0.75
SMPD3-204ENST00000563396 OVOS2A0A0G2JMS6 1433 aa19.72■□□□□ 0.75
SMPD3-204ENST00000563396 CDCA8Q53HL2 280 aa19.72■□□□□ 0.75
SMPD3-204ENST00000563396 DEFB132Q7Z7B7 95 aa19.72■□□□□ 0.75
SMPD3-204ENST00000563396 ERBB3P21860 1342 aa19.72■□□□□ 0.75
SMPD3-204ENST00000563396 CCDC7Q96M83 1385 aa19.71■□□□□ 0.75
SMPD3-204ENST00000563396 SOX12O15370 315 aa19.71■□□□□ 0.75
SMPD3-204ENST00000563396 FAM182BQ5T319 152 aa19.71■□□□□ 0.75
SMPD3-204ENST00000563396 ANKRD26Q9UPS8 1709 aa19.71■□□□□ 0.75
SMPD3-204ENST00000563396 TNS2Q63HR2 1409 aa19.7■□□□□ 0.74
SMPD3-204ENST00000563396 FAM196AQ6ZSG2 479 aa19.7■□□□□ 0.74
SMPD3-204ENST00000563396 TOM1L2Q6ZVM7 507 aa19.7■□□□□ 0.74
SMPD3-204ENST00000563396 CCER1Q8TC90 406 aaPredicted RBP19.7■□□□□ 0.74
SMPD3-204ENST00000563396 CARD10Q9BWT7 1032 aa19.7■□□□□ 0.74
SMPD3-204ENST00000563396 NUP188Q5SRE5 1749 aa19.7■□□□□ 0.74
SMPD3-204ENST00000563396 BCL9O00512 1426 aa19.69■□□□□ 0.74
SMPD3-204ENST00000563396 BAG6P46379 1132 aa19.69■□□□□ 0.74
SMPD3-204ENST00000563396 PDE3BQ13370 1112 aa19.68■□□□□ 0.74
SMPD3-204ENST00000563396 PARD3Q8TEW0 1356 aa19.68■□□□□ 0.74
SMPD3-204ENST00000563396 CDCA7Q9BWT1 371 aaPredicted RBP19.67■□□□□ 0.74
SMPD3-204ENST00000563396 RTL1A6NKG5 1358 aa19.67■□□□□ 0.74
SMPD3-204ENST00000563396 LRP5O75197 1615 aa19.66■□□□□ 0.74
SMPD3-204ENST00000563396 C11orf95C9JLR9 678 aaPredicted RBP19.66■□□□□ 0.74
SMPD3-204ENST00000563396 NHSQ6T4R5 1651 aa19.65■□□□□ 0.74
SMPD3-204ENST00000563396 RGPD2P0DJD1 1756 aa19.65■□□□□ 0.74
SMPD3-204ENST00000563396 COG3Q96JB2 828 aa19.64■□□□□ 0.73
SMPD3-204ENST00000563396 SHANK3Q9BYB0 1731 aa19.63■□□□□ 0.73
SMPD3-204ENST00000563396 NSD3Q9BZ95 1437 aa19.63■□□□□ 0.73
SMPD3-204ENST00000563396 CSB-PGBD3P0DP91 1061 aa19.63■□□□□ 0.73
SMPD3-204ENST00000563396 DDB1Q16531 1140 aa19.63■□□□□ 0.73
SMPD3-204ENST00000563396 SRCAPQ6ZRS2 3230 aa19.63■□□□□ 0.73
SMPD3-204ENST00000563396 MAP3K19Q56UN5 1328 aa19.62■□□□□ 0.73
SMPD3-204ENST00000563396 TRIM37O94972 964 aa19.62■□□□□ 0.73
SMPD3-204ENST00000563396 FYB1O15117 783 aa19.61■□□□□ 0.73
SMPD3-204ENST00000563396 IP6K1Q92551 441 aa19.61■□□□□ 0.73
SMPD3-204ENST00000563396 KIF24Q5T7B8 1368 aa19.6■□□□□ 0.73
SMPD3-204ENST00000563396 EN1Q05925 392 aaPredicted RBP19.6■□□□□ 0.73
SMPD3-204ENST00000563396 ANKRD24Q8TF21 1146 aa19.6■□□□□ 0.73
SMPD3-204ENST00000563396 EIF4G2P78344 907 aaKnown RBP eCLIP19.59■□□□□ 0.73
SMPD3-204ENST00000563396 CAMKK2Q96RR4 588 aa19.59■□□□□ 0.73
SMPD3-204ENST00000563396 HOXC9P31274 260 aa19.58■□□□□ 0.72
SMPD3-204ENST00000563396 MARCH10Q8NA82 808 aaPredicted RBP19.57■□□□□ 0.72
SMPD3-204ENST00000563396 CARD14Q9BXL6 1004 aa19.57■□□□□ 0.72
SMPD3-204ENST00000563396 GGNBP2Q9H3C7 697 aa19.57■□□□□ 0.72
SMPD3-204ENST00000563396 HSPA5P11021 654 aaKnown RBP19.56■□□□□ 0.72
SMPD3-204ENST00000563396 EZH2Q15910 746 aaKnown RBP19.56■□□□□ 0.72
SMPD3-204ENST00000563396 APBA3O96018 575 aa19.55■□□□□ 0.72
SMPD3-204ENST00000563396 NLRP2Q9NX02 1062 aa19.55■□□□□ 0.72
SMPD3-204ENST00000563396 FLT4P35916 1363 aa19.55■□□□□ 0.72
SMPD3-204ENST00000563396 IL2RBP14784 551 aa19.54■□□□□ 0.72
SMPD3-204ENST00000563396 BTAF1O14981 1849 aa19.53■□□□□ 0.72
SMPD3-204ENST00000563396 MAP2P11137 1827 aaKnown RBP19.53■□□□□ 0.72
SMPD3-204ENST00000563396 DOT1LQ8TEK3 1739 aa19.53■□□□□ 0.72
SMPD3-204ENST00000563396 NCAPD2Q15021 1401 aa19.52■□□□□ 0.72
SMPD3-204ENST00000563396 SMG6Q86US8 1419 aaKnown RBP19.52■□□□□ 0.72
SMPD3-204ENST00000563396 MEGF6O75095 1541 aa19.52■□□□□ 0.72
SMPD3-204ENST00000563396 EXOC5O00471 708 aa19.52■□□□□ 0.72
SMPD3-204ENST00000563396 FBLN1P23142 703 aa19.52■□□□□ 0.72
SMPD3-204ENST00000563396 INSRP06213 1382 aa19.52■□□□□ 0.72
SMPD3-204ENST00000563396 PKD1L3Q7Z443 1732 aa19.51■□□□□ 0.71
SMPD3-204ENST00000563396 AMPHP49418 695 aa19.51■□□□□ 0.71
SMPD3-204ENST00000563396 RRS1Q15050 365 aaKnown RBP19.51■□□□□ 0.71
SMPD3-204ENST00000563396 BCL11BQ9C0K0 894 aaPredicted RBP19.51■□□□□ 0.71
SMPD3-204ENST00000563396 CGNL1Q0VF96 1302 aa19.51■□□□□ 0.71
SMPD3-204ENST00000563396 PAPPAQ13219 1627 aa19.5■□□□□ 0.71
SMPD3-204ENST00000563396 PLSCR1O15162 318 aa19.49■□□□□ 0.71
SMPD3-204ENST00000563396 CASZ1Q86V15 1759 aa19.48■□□□□ 0.71
SMPD3-204ENST00000563396 NSD2O96028 1365 aa19.47■□□□□ 0.71
SMPD3-204ENST00000563396 PSDA5PKW4 1024 aaPredicted RBP19.46■□□□□ 0.71
SMPD3-204ENST00000563396 PTF1AQ7RTS3 328 aa19.46■□□□□ 0.71
SMPD3-204ENST00000563396 LTV1Q96GA3 475 aaPredicted RBP19.46■□□□□ 0.71
SMPD3-204ENST00000563396 R3HDM1Q15032 1099 aaKnown RBP19.44■□□□□ 0.7
SMPD3-204ENST00000563396 LY75O60449 1722 aa19.44■□□□□ 0.7
SMPD3-204ENST00000563396 HSP90AB2PQ58FF8 381 aa19.43■□□□□ 0.7
SMPD3-204ENST00000563396 NBPF6Q5VWK0 638 aa19.43■□□□□ 0.7
SMPD3-204ENST00000563396 NBPF4Q96M43 638 aa19.43■□□□□ 0.7
SMPD3-204ENST00000563396 EMILIN1Q9Y6C2 1016 aa19.43■□□□□ 0.7
SMPD3-204ENST00000563396 TOGARAM1Q9Y4F4 1720 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms