RNA–Protein interactions for RNA: ENST00000563366.5

UBFD1-202, Transcript of ubiquitin family domain containing 1, humanhuman

TSL 3

Gene UBFD1, Length 709 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1-202ENST00000563366 CPSF1Q10570 1443 aaKnown RBP13.01□□□□□ -0.33
UBFD1-202ENST00000563366 EDC4Q6P2E9 1401 aaKnown RBP13.01□□□□□ -0.33
UBFD1-202ENST00000563366 PPP2R1AP30153 589 aa13□□□□□ -0.33
UBFD1-202ENST00000563366 HNRNPUQ00839 825 aaKnown RBP eCLIP13□□□□□ -0.33
UBFD1-202ENST00000563366 NRKQ7Z2Y5 1582 aa12.99□□□□□ -0.33
UBFD1-202ENST00000563366 MORC1Q86VD1 984 aa12.99□□□□□ -0.33
UBFD1-202ENST00000563366 NUDT16Q96DE0 195 aaKnown RBP12.99□□□□□ -0.33
UBFD1-202ENST00000563366 CABP1Q9NZU7 370 aa12.99□□□□□ -0.33
UBFD1-202ENST00000563366 KCNA6P17658 529 aa12.98□□□□□ -0.33
UBFD1-202ENST00000563366 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.98□□□□□ -0.336e-7■□□□□ 8.1
UBFD1-202ENST00000563366 ADGRL3Q9HAR2 1447 aa12.97□□□□□ -0.33
UBFD1-202ENST00000563366 POLR3AO14802 1390 aaPredicted RBP12.97□□□□□ -0.33
UBFD1-202ENST00000563366 ZBED9Q6R2W3 1325 aa12.97□□□□□ -0.33
UBFD1-202ENST00000563366 LMTK3Q96Q04 1460 aa12.97□□□□□ -0.33
UBFD1-202ENST00000563366 RGPD8O14715 1765 aaPredicted RBP12.97□□□□□ -0.33
UBFD1-202ENST00000563366 WDR43Q15061 677 aaKnown RBP eCLIP12.95□□□□□ -0.34
UBFD1-202ENST00000563366 CFAP53Q96M91 514 aa12.95□□□□□ -0.34
UBFD1-202ENST00000563366 BLMP54132 1417 aaPredicted RBP12.95□□□□□ -0.34
UBFD1-202ENST00000563366 NCKAP5LQ9HCH0 1330 aa12.94□□□□□ -0.34
UBFD1-202ENST00000563366 KDM4FA0A1W2PPD8 638 aa12.94□□□□□ -0.34
UBFD1-202ENST00000563366 PLEKHG3A1L390 1219 aa12.94□□□□□ -0.34
UBFD1-202ENST00000563366 NCOA3Q9Y6Q9 1424 aa12.94□□□□□ -0.34
UBFD1-202ENST00000563366 PRR36Q9H6K5 1346 aa12.93□□□□□ -0.34
UBFD1-202ENST00000563366 SHPRHQ149N8 1683 aa12.93□□□□□ -0.34
UBFD1-202ENST00000563366 STRCQ7RTU9 1775 aa12.92□□□□□ -0.34
UBFD1-202ENST00000563366 FYB1O15117 783 aa12.92□□□□□ -0.34
UBFD1-202ENST00000563366 USP6P35125 1406 aa12.92□□□□□ -0.34
UBFD1-202ENST00000563366 ATN1P54259 1190 aaPredicted RBP12.92□□□□□ -0.34
UBFD1-202ENST00000563366 KIF1AQ12756 1690 aa12.92□□□□□ -0.34
UBFD1-202ENST00000563366 DCCP43146 1447 aa12.91□□□□□ -0.34
UBFD1-202ENST00000563366 POTEHQ6S545 545 aa12.91□□□□□ -0.34
UBFD1-202ENST00000563366 ILDR1Q86SU0 546 aaPredicted RBP12.91□□□□□ -0.34
UBFD1-202ENST00000563366 USP54Q70EL1 1684 aa12.91□□□□□ -0.34
UBFD1-202ENST00000563366 TTC21AQ8NDW8 1320 aa12.9□□□□□ -0.34
UBFD1-202ENST00000563366 MAP2P11137 1827 aaKnown RBP12.9□□□□□ -0.34
UBFD1-202ENST00000563366 LRRC7Q96NW7 1537 aa12.9□□□□□ -0.34
UBFD1-202ENST00000563366 ATMINO43313 823 aaPredicted RBP12.9□□□□□ -0.34
UBFD1-202ENST00000563366 ACEP12821 1306 aa12.89□□□□□ -0.35
UBFD1-202ENST00000563366 NGEFQ8N5V2 710 aa12.89□□□□□ -0.35
UBFD1-202ENST00000563366 GGNBP2Q9H3C7 697 aa12.89□□□□□ -0.35
UBFD1-202ENST00000563366 GABBR2O75899 941 aa12.88□□□□□ -0.35
UBFD1-202ENST00000563366 PDE4AP27815 886 aa12.88□□□□□ -0.35
UBFD1-202ENST00000563366 ASTLQ6HA08 431 aaPredicted RBP12.88□□□□□ -0.35
UBFD1-202ENST00000563366 C14orf37Q86TY3 774 aa12.88□□□□□ -0.35
UBFD1-202ENST00000563366 KCNV2Q8TDN2 545 aa12.88□□□□□ -0.35
UBFD1-202ENST00000563366 COG3Q96JB2 828 aa12.88□□□□□ -0.35
UBFD1-202ENST00000563366 AATKQ6ZMQ8 1374 aa12.88□□□□□ -0.35
UBFD1-202ENST00000563366 STRCP1A6NGW2 1772 aa12.88□□□□□ -0.35
UBFD1-202ENST00000563366 SMG6Q86US8 1419 aaKnown RBP12.88□□□□□ -0.35
UBFD1-202ENST00000563366 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.87□□□□□ -0.35
UBFD1-202ENST00000563366 NGDNQ8NEJ9 315 aaKnown RBP12.87□□□□□ -0.35
UBFD1-202ENST00000563366 SSH2Q76I76 1423 aa12.87□□□□□ -0.35
UBFD1-202ENST00000563366 CDK12Q9NYV4 1490 aaPredicted RBP12.86□□□□□ -0.35
UBFD1-202ENST00000563366 TNNT2P45379 298 aaPredicted RBP12.86□□□□□ -0.35
UBFD1-202ENST00000563366 MTHFSP49914 203 aa12.86□□□□□ -0.35
UBFD1-202ENST00000563366 PDE3BQ13370 1112 aa12.86□□□□□ -0.35
UBFD1-202ENST00000563366 PROSER2Q86WR7 435 aaPredicted RBP12.86□□□□□ -0.35
UBFD1-202ENST00000563366 OVOS2A0A0J9YW53 1432 aa12.86□□□□□ -0.35
UBFD1-202ENST00000563366 OVOS2Q6IE36 1432 aa12.86□□□□□ -0.35
UBFD1-202ENST00000563366 PIK3C2AO00443 1686 aa12.86□□□□□ -0.35
UBFD1-202ENST00000563366 TTC21BQ7Z4L5 1316 aa12.86□□□□□ -0.35
UBFD1-202ENST00000563366 PRKCSHP14314 528 aaPredicted RBP12.85□□□□□ -0.35
UBFD1-202ENST00000563366 TPRNQ4KMQ1 711 aa12.85□□□□□ -0.35
UBFD1-202ENST00000563366 LARP6Q9BRS8 491 aaKnown RBP12.85□□□□□ -0.35
UBFD1-202ENST00000563366 NUDCQ9Y266 331 aa12.85□□□□□ -0.35
UBFD1-202ENST00000563366 COL3A1P02461 1466 aaPredicted RBP12.85□□□□□ -0.35
UBFD1-202ENST00000563366 NUTM2FA1L443 756 aa12.84□□□□□ -0.35
UBFD1-202ENST00000563366 HSPA2P54652 639 aa12.84□□□□□ -0.35
UBFD1-202ENST00000563366 IER5LQ5T953 404 aa12.84□□□□□ -0.35
UBFD1-202ENST00000563366 C19orf44Q9H6X5 657 aa12.84□□□□□ -0.35
UBFD1-202ENST00000563366 ADAMTS8Q9UP79 889 aa12.84□□□□□ -0.35
UBFD1-202ENST00000563366 USP31Q70CQ4 1352 aa12.83□□□□□ -0.36
UBFD1-202ENST00000563366 PNPLA6Q8IY17 1366 aa12.83□□□□□ -0.36
UBFD1-202ENST00000563366 E2F4Q16254 413 aa12.83□□□□□ -0.36
UBFD1-202ENST00000563366 PNNQ9H307 717 aaKnown RBP12.83□□□□□ -0.36
UBFD1-202ENST00000563366 XIRP1Q702N8 1843 aaKnown RBP12.83□□□□□ -0.36
UBFD1-202ENST00000563366 DPY19L2Q6NUT2 758 aa12.82□□□□□ -0.36
UBFD1-202ENST00000563366 NME9Q86XW9 330 aa12.82□□□□□ -0.36
UBFD1-202ENST00000563366 PMFBP1Q8TBY8 1022 aa12.82□□□□□ -0.36
UBFD1-202ENST00000563366 CRISPLD2Q9H0B8 497 aa12.82□□□□□ -0.36
UBFD1-202ENST00000563366 MSH6P52701 1360 aa12.81□□□□□ -0.36
UBFD1-202ENST00000563366 TMEM94Q12767 1356 aa12.81□□□□□ -0.36
UBFD1-202ENST00000563366 IRX5P78411 483 aaPredicted RBP12.81□□□□□ -0.36
UBFD1-202ENST00000563366 PDCD7Q8N8D1 485 aaKnown RBP12.81□□□□□ -0.36
UBFD1-202ENST00000563366 DCBLD2Q96PD2 775 aa12.81□□□□□ -0.36
UBFD1-202ENST00000563366 OCEL1Q9H607 264 aa12.81□□□□□ -0.36
UBFD1-202ENST00000563366 MARF1Q9Y4F3 1742 aaKnown RBP12.8□□□□□ -0.36
UBFD1-202ENST00000563366 ATF3P18847 181 aa12.8□□□□□ -0.36
UBFD1-202ENST00000563366 MFSD10Q14728 455 aa12.8□□□□□ -0.36
UBFD1-202ENST00000563366 DDX27Q96GQ7 796 aaKnown RBP12.8□□□□□ -0.36
UBFD1-202ENST00000563366 GTF3C3Q9Y5Q9 886 aa12.8□□□□□ -0.36
UBFD1-202ENST00000563366 KIF24Q5T7B8 1368 aa12.8□□□□□ -0.36
UBFD1-202ENST00000563366 C1orf167Q5SNV9 1468 aa12.79□□□□□ -0.36
UBFD1-202ENST00000563366 DIAPH1O60610 1272 aaKnown RBP12.79□□□□□ -0.36
UBFD1-202ENST00000563366 NEFLP07196 543 aa12.79□□□□□ -0.36
UBFD1-202ENST00000563366 IQSEC2Q5JU85 1478 aa12.78□□□□□ -0.36
UBFD1-202ENST00000563366 PLCG2P16885 1265 aa12.78□□□□□ -0.36
UBFD1-202ENST00000563366 ESCO1Q5FWF5 840 aa12.78□□□□□ -0.36
UBFD1-202ENST00000563366 RUNDC1Q96C34 613 aa12.78□□□□□ -0.36
UBFD1-202ENST00000563366 POLKQ9UBT6 870 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms