RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 RGPD5Q99666 1765 aa22.36■■□□□ 1.17
CLK3-211ENST00000563297 DDB1Q16531 1140 aa22.36■■□□□ 1.17
CLK3-211ENST00000563297 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.36■■□□□ 1.17
CLK3-211ENST00000563297 TONSLQ96HA7 1378 aa22.36■■□□□ 1.17
CLK3-211ENST00000563297 TMC1Q8TDI8 760 aa22.34■■□□□ 1.17
CLK3-211ENST00000563297 SLC12A5Q9H2X9 1139 aa22.34■■□□□ 1.17
CLK3-211ENST00000563297 CARD10Q9BWT7 1032 aa22.33■■□□□ 1.17
CLK3-211ENST00000563297 MON2Q7Z3U7 1717 aa22.32■■□□□ 1.16
CLK3-211ENST00000563297 CDCA7Q9BWT1 371 aaPredicted RBP22.32■■□□□ 1.16
CLK3-211ENST00000563297 USP31Q70CQ4 1352 aa22.32■■□□□ 1.16
CLK3-211ENST00000563297 CD163L1Q9NR16 1453 aa22.32■■□□□ 1.16
CLK3-211ENST00000563297 OVOS2A0A0G2JMS6 1433 aa22.31■■□□□ 1.16
CLK3-211ENST00000563297 OVOS2A0A0J9YW53 1432 aa22.31■■□□□ 1.16
CLK3-211ENST00000563297 OVOS2Q6IE36 1432 aa22.31■■□□□ 1.16
CLK3-211ENST00000563297 NFAT5O94916 1531 aa22.31■■□□□ 1.16
CLK3-211ENST00000563297 CSB-PGBD3P0DP91 1061 aa22.31■■□□□ 1.16
CLK3-211ENST00000563297 NME9Q86XW9 330 aa22.31■■□□□ 1.16
CLK3-211ENST00000563297 PEAK1Q9H792 1746 aa22.31■■□□□ 1.16
CLK3-211ENST00000563297 HDGFL2Q7Z4V5 671 aaPredicted RBP22.3■■□□□ 1.16
CLK3-211ENST00000563297 MARCH10Q8NA82 808 aaPredicted RBP22.3■■□□□ 1.16
CLK3-211ENST00000563297 PUS7Q96PZ0 661 aaKnown RBP22.3■■□□□ 1.16
CLK3-211ENST00000563297 SBF2Q86WG5 1849 aa22.29■■□□□ 1.16
CLK3-211ENST00000563297 LRRC37A3O60309 1634 aa22.29■■□□□ 1.16
CLK3-211ENST00000563297 NBPF14Q5TI25 921 aa22.29■■□□□ 1.16
CLK3-211ENST00000563297 RREB1Q92766 1687 aa22.29■■□□□ 1.16
CLK3-211ENST00000563297 PTF1AQ7RTS3 328 aa22.28■■□□□ 1.16
CLK3-211ENST00000563297 PLSCR1O15162 318 aa22.27■■□□□ 1.16
CLK3-211ENST00000563297 BCL11BQ9C0K0 894 aaPredicted RBP22.27■■□□□ 1.16
CLK3-211ENST00000563297 NUP188Q5SRE5 1749 aa22.26■■□□□ 1.15
CLK3-211ENST00000563297 EXOC5O00471 708 aa22.26■■□□□ 1.15
CLK3-211ENST00000563297 TESK2Q96S53 571 aa22.26■■□□□ 1.15
CLK3-211ENST00000563297 TERF2IPQ9NYB0 399 aa22.26■■□□□ 1.15
CLK3-211ENST00000563297 WNK3Q9BYP7 1800 aa22.25■■□□□ 1.15
CLK3-211ENST00000563297 ST20-MTHFSA0A0A6YYL1 179 aa22.25■■□□□ 1.15
CLK3-211ENST00000563297 EDC4Q6P2E9 1401 aaKnown RBP22.24■■□□□ 1.15
CLK3-211ENST00000563297 TRIM26Q12899 539 aaPredicted RBP22.24■■□□□ 1.15
CLK3-211ENST00000563297 CCDC7Q96M83 1385 aa22.24■■□□□ 1.15
CLK3-211ENST00000563297 USP54Q70EL1 1684 aa22.23■■□□□ 1.15
CLK3-211ENST00000563297 BCL9O00512 1426 aa22.23■■□□□ 1.15
CLK3-211ENST00000563297 ABCC6O95255 1503 aa22.23■■□□□ 1.15
CLK3-211ENST00000563297 A0A1W2PP64 1363 aa22.23■■□□□ 1.15
CLK3-211ENST00000563297 ERBB3P21860 1342 aa22.22■■□□□ 1.15
CLK3-211ENST00000563297 PROM2Q8N271 834 aa22.2■■□□□ 1.14
CLK3-211ENST00000563297 NLRP2Q9NX02 1062 aa22.2■■□□□ 1.14
CLK3-211ENST00000563297 SLC24A1O60721 1099 aa22.19■■□□□ 1.14
CLK3-211ENST00000563297 LTN1O94822 1766 aa22.19■■□□□ 1.14
CLK3-211ENST00000563297 ANKRD24Q8TF21 1146 aa22.18■■□□□ 1.14
CLK3-211ENST00000563297 RGPD3A6NKT7 1758 aaPredicted RBP22.17■■□□□ 1.14
CLK3-211ENST00000563297 RGPD4Q7Z3J3 1758 aa22.17■■□□□ 1.14
CLK3-211ENST00000563297 IL2RBP14784 551 aa22.16■■□□□ 1.14
CLK3-211ENST00000563297 NINLQ9Y2I6 1382 aa22.15■■□□□ 1.14
CLK3-211ENST00000563297 KCNQ2O43526 872 aa22.15■■□□□ 1.14
CLK3-211ENST00000563297 IP6K1Q92551 441 aa22.15■■□□□ 1.14
CLK3-211ENST00000563297 ANO8Q9HCE9 1232 aaPredicted RBP22.15■■□□□ 1.14
CLK3-211ENST00000563297 TNS2Q63HR2 1409 aa22.14■■□□□ 1.14
CLK3-211ENST00000563297 SPON1Q9HCB6 807 aa22.14■■□□□ 1.13
CLK3-211ENST00000563297 KAT6BQ8WYB5 2073 aa22.13■■□□□ 1.13
CLK3-211ENST00000563297 FBLN1P23142 703 aa22.12■■□□□ 1.13
CLK3-211ENST00000563297 TXNRD1Q16881 649 aa22.12■■□□□ 1.13
CLK3-211ENST00000563297 COG3Q96JB2 828 aa22.12■■□□□ 1.13
CLK3-211ENST00000563297 ACSBG1Q96GR2 724 aa22.11■■□□□ 1.13
CLK3-211ENST00000563297 TMF1P82094 1093 aa22.09■■□□□ 1.13
CLK3-211ENST00000563297 LTV1Q96GA3 475 aaPredicted RBP22.09■■□□□ 1.13
CLK3-211ENST00000563297 PDGFDQ9GZP0 370 aaPredicted RBP22.09■■□□□ 1.13
CLK3-211ENST00000563297 MAP3K19Q56UN5 1328 aa22.08■■□□□ 1.13
CLK3-211ENST00000563297 ANKRD36BQ8N2N9 1353 aa22.08■■□□□ 1.12
CLK3-211ENST00000563297 HOXC9P31274 260 aa22.07■■□□□ 1.12
CLK3-211ENST00000563297 USP47Q96K76 1375 aa22.07■■□□□ 1.12
CLK3-211ENST00000563297 FYB1O15117 783 aa22.06■■□□□ 1.12
CLK3-211ENST00000563297 AMPHP49418 695 aa22.06■■□□□ 1.12
CLK3-211ENST00000563297 PPP1R1BQ9UD71 204 aaPredicted RBP22.06■■□□□ 1.12
CLK3-211ENST00000563297 SLC15A2Q16348 729 aa22.05■■□□□ 1.12
CLK3-211ENST00000563297 STK32BQ9NY57 414 aa22.05■■□□□ 1.12
CLK3-211ENST00000563297 NHSQ6T4R5 1651 aa22.04■■□□□ 1.12
CLK3-211ENST00000563297 CASZ1Q86V15 1759 aa22.03■■□□□ 1.12
CLK3-211ENST00000563297 DDX54Q8TDD1 881 aaKnown RBP22.03■■□□□ 1.12
CLK3-211ENST00000563297 GGNBP2Q9H3C7 697 aa22.03■■□□□ 1.12
CLK3-211ENST00000563297 ZBTB7AO95365 584 aa22.01■■□□□ 1.11
CLK3-211ENST00000563297 RRS1Q15050 365 aaKnown RBP22.01■■□□□ 1.11
CLK3-211ENST00000563297 CDCA8Q53HL2 280 aa22■■□□□ 1.11
CLK3-211ENST00000563297 BTAF1O14981 1849 aa22■■□□□ 1.11
CLK3-211ENST00000563297 FAM208AQ9UK61 1670 aaKnown RBP22■■□□□ 1.11
CLK3-211ENST00000563297 TIMELESSQ9UNS1 1208 aa21.99■■□□□ 1.11
CLK3-211ENST00000563297 ATF5Q9Y2D1 282 aaPredicted RBP21.99■■□□□ 1.11
CLK3-211ENST00000563297 RGPD2P0DJD1 1756 aa21.99■■□□□ 1.11
CLK3-211ENST00000563297 PTGER2P43116 358 aa21.98■■□□□ 1.11
CLK3-211ENST00000563297 NBPF6Q5VWK0 638 aa21.97■■□□□ 1.11
CLK3-211ENST00000563297 ZCRB1Q8TBF4 217 aaKnown RBP21.97■■□□□ 1.11
CLK3-211ENST00000563297 NBPF4Q96M43 638 aa21.97■■□□□ 1.11
CLK3-211ENST00000563297 LRRC4BQ9NT99 713 aa21.97■■□□□ 1.11
CLK3-211ENST00000563297 CARD14Q9BXL6 1004 aa21.96■■□□□ 1.11
CLK3-211ENST00000563297 RTL1A6NKG5 1358 aa21.96■■□□□ 1.11
CLK3-211ENST00000563297 PRIM1P49642 420 aaKnown RBP21.95■■□□□ 1.1
CLK3-211ENST00000563297 HSP90AB2PQ58FF8 381 aa21.93■■□□□ 1.1
CLK3-211ENST00000563297 PCGF6Q9BYE7 350 aa21.93■■□□□ 1.1
CLK3-211ENST00000563297 MTFR1LQ9H019 292 aa21.93■■□□□ 1.1
CLK3-211ENST00000563297 ZNF827Q17R98 1081 aa21.92■■□□□ 1.1
CLK3-211ENST00000563297 USHBP1Q8N6Y0 703 aa21.92■■□□□ 1.1
CLK3-211ENST00000563297 SYTL4Q96C24 671 aaPredicted RBP21.92■■□□□ 1.1
CLK3-211ENST00000563297 PAPPAQ13219 1627 aa21.91■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 246.5 ms