RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CNGB1Q14028 1251 aaPredicted RBP13.45□□□□□ -0.26
CLK3-208ENST00000562626 FNBP4Q8N3X1 1017 aaPredicted RBP13.45□□□□□ -0.26
CLK3-208ENST00000562626 AXIN2Q9Y2T1 843 aa13.45□□□□□ -0.26
CLK3-208ENST00000562626 KNSTRNQ9Y448 316 aa13.45□□□□□ -0.26
CLK3-208ENST00000562626 MAP3K19Q56UN5 1328 aa13.44□□□□□ -0.26
CLK3-208ENST00000562626 RRS1Q15050 365 aaKnown RBP13.44□□□□□ -0.26
CLK3-208ENST00000562626 CC2D1BQ5T0F9 858 aaKnown RBP13.44□□□□□ -0.26
CLK3-208ENST00000562626 BTG4Q9NY30 223 aa13.44□□□□□ -0.26
CLK3-208ENST00000562626 ATRNO75882 1429 aa13.44□□□□□ -0.26
CLK3-208ENST00000562626 NSD2O96028 1365 aa13.44□□□□□ -0.26
CLK3-208ENST00000562626 TNNT2P45379 298 aaPredicted RBP13.43□□□□□ -0.26
CLK3-208ENST00000562626 KCNH5Q8NCM2 988 aa13.43□□□□□ -0.26
CLK3-208ENST00000562626 USP21Q9UK80 565 aa13.43□□□□□ -0.26
CLK3-208ENST00000562626 AATKQ6ZMQ8 1374 aa13.43□□□□□ -0.26
CLK3-208ENST00000562626 RGPD1P0DJD0 1748 aa13.42□□□□□ -0.26
CLK3-208ENST00000562626 SHANK3Q9BYB0 1731 aa13.42□□□□□ -0.26
CLK3-208ENST00000562626 EMILIN1Q9Y6C2 1016 aa13.42□□□□□ -0.26
CLK3-208ENST00000562626 NPC1L1Q9UHC9 1359 aa13.42□□□□□ -0.26
CLK3-208ENST00000562626 THSD7AQ9UPZ6 1657 aa13.41□□□□□ -0.26
CLK3-208ENST00000562626 SMG6Q86US8 1419 aaKnown RBP13.41□□□□□ -0.26
CLK3-208ENST00000562626 UNC5CLQ8IV45 518 aa13.4□□□□□ -0.26
CLK3-208ENST00000562626 VIRMAQ69YN4 1812 aaKnown RBP13.4□□□□□ -0.26
CLK3-208ENST00000562626 PARP4Q9UKK3 1724 aaKnown RBP13.39□□□□□ -0.27
CLK3-208ENST00000562626 MORC1Q86VD1 984 aa13.39□□□□□ -0.27
CLK3-208ENST00000562626 STRN4Q9NRL3 753 aa13.39□□□□□ -0.27
CLK3-208ENST00000562626 LRRC37A3O60309 1634 aa13.39□□□□□ -0.27
CLK3-208ENST00000562626 COL3A1P02461 1466 aaPredicted RBP13.38□□□□□ -0.27
CLK3-208ENST00000562626 HOXC9P31274 260 aa13.38□□□□□ -0.27
CLK3-208ENST00000562626 LARP1Q6PKG0 1096 aaKnown RBP13.38□□□□□ -0.27
CLK3-208ENST00000562626 POLKQ9UBT6 870 aa13.38□□□□□ -0.27
CLK3-208ENST00000562626 CDK12Q9NYV4 1490 aaPredicted RBP13.37□□□□□ -0.27
CLK3-208ENST00000562626 RTL1A6NKG5 1358 aa13.37□□□□□ -0.27
CLK3-208ENST00000562626 PARD3Q8TEW0 1356 aa13.37□□□□□ -0.27
CLK3-208ENST00000562626 HSP90AB2PQ58FF8 381 aa13.37□□□□□ -0.27
CLK3-208ENST00000562626 IP6K1Q92551 441 aa13.37□□□□□ -0.27
CLK3-208ENST00000562626 QTRT2Q9H974 415 aaKnown RBP13.37□□□□□ -0.27
CLK3-208ENST00000562626 BLMP54132 1417 aaPredicted RBP13.37□□□□□ -0.27
CLK3-208ENST00000562626 FLT4P35916 1363 aa13.36□□□□□ -0.27
CLK3-208ENST00000562626 VPS72Q15906 364 aa13.36□□□□□ -0.27
CLK3-208ENST00000562626 ZNF772Q68DY9 489 aaPredicted RBP13.36□□□□□ -0.27
CLK3-208ENST00000562626 RGS12O14924 1447 aa13.36□□□□□ -0.27
CLK3-208ENST00000562626 ERBB3P21860 1342 aa13.36□□□□□ -0.27
CLK3-208ENST00000562626 SBF2Q86WG5 1849 aa13.35□□□□□ -0.27
CLK3-208ENST00000562626 AMPHP49418 695 aa13.35□□□□□ -0.27
CLK3-208ENST00000562626 LTV1Q96GA3 475 aaPredicted RBP13.35□□□□□ -0.27
CLK3-208ENST00000562626 TRPC5Q9UL62 973 aaPredicted RBP13.35□□□□□ -0.27
CLK3-208ENST00000562626 CRB1P82279 1406 aa13.35□□□□□ -0.27
CLK3-208ENST00000562626 SPATA31A5Q5VU36 1347 aa13.35□□□□□ -0.27
CLK3-208ENST00000562626 SPATA31A7Q8IWB4 1347 aa13.35□□□□□ -0.27
CLK3-208ENST00000562626 WDR17Q8IZU2 1322 aa13.35□□□□□ -0.27
CLK3-208ENST00000562626 INSRP06213 1382 aa13.34□□□□□ -0.27
CLK3-208ENST00000562626 PPM1GO15355 546 aaPredicted RBP13.34□□□□□ -0.27
CLK3-208ENST00000562626 ANKRD24Q8TF21 1146 aa13.34□□□□□ -0.27
CLK3-208ENST00000562626 GJD4Q96KN9 370 aaPredicted RBP13.34□□□□□ -0.27
CLK3-208ENST00000562626 SPATA31A1Q5TZJ5 1347 aa13.34□□□□□ -0.27
CLK3-208ENST00000562626 PKD1L3Q7Z443 1732 aa13.33□□□□□ -0.27
CLK3-208ENST00000562626 USP35Q9P2H5 1018 aa13.33□□□□□ -0.28
CLK3-208ENST00000562626 KIF24Q5T7B8 1368 aa13.32□□□□□ -0.28
CLK3-208ENST00000562626 PPP2R1AP30153 589 aa13.32□□□□□ -0.28
CLK3-208ENST00000562626 MTHFSP49914 203 aa13.32□□□□□ -0.28
CLK3-208ENST00000562626 EVA1CP58658 441 aa13.32□□□□□ -0.28
CLK3-208ENST00000562626 DISP2A7MBM2 1401 aa13.31□□□□□ -0.28
CLK3-208ENST00000562626 RBM6P78332 1123 aaKnown RBP13.31□□□□□ -0.28
CLK3-208ENST00000562626 CCDC9Q9Y3X0 531 aaKnown RBP13.31□□□□□ -0.28
CLK3-208ENST00000562626 NCAPD2Q15021 1401 aa13.3□□□□□ -0.28
CLK3-208ENST00000562626 KAT6BQ8WYB5 2073 aa13.3□□□□□ -0.28
CLK3-208ENST00000562626 MEGF6O75095 1541 aa13.3□□□□□ -0.28
CLK3-208ENST00000562626 EIF4A2Q14240 407 aaKnown RBP13.3□□□□□ -0.28
CLK3-208ENST00000562626 NBPF6Q5VWK0 638 aa13.3□□□□□ -0.28
CLK3-208ENST00000562626 TOM1L2Q6ZVM7 507 aa13.3□□□□□ -0.28
CLK3-208ENST00000562626 USHBP1Q8N6Y0 703 aa13.3□□□□□ -0.28
CLK3-208ENST00000562626 NBPF4Q96M43 638 aa13.3□□□□□ -0.28
CLK3-208ENST00000562626 DLG5Q8TDM6 1919 aa13.3□□□□□ -0.28
CLK3-208ENST00000562626 CSB-PGBD3P0DP91 1061 aa13.29□□□□□ -0.28
CLK3-208ENST00000562626 RXRBP28702 533 aa13.29□□□□□ -0.28
CLK3-208ENST00000562626 FAM98CQ17RN3 349 aaKnown RBP13.29□□□□□ -0.28
CLK3-208ENST00000562626 IFFO2Q5TF58 517 aa13.29□□□□□ -0.28
CLK3-208ENST00000562626 TOGARAM1Q9Y4F4 1720 aa13.28□□□□□ -0.28
CLK3-208ENST00000562626 CARD10Q9BWT7 1032 aa13.28□□□□□ -0.28
CLK3-208ENST00000562626 PRKRIP1Q9H875 184 aaPredicted RBP13.28□□□□□ -0.28
CLK3-208ENST00000562626 NLRP2Q9NX02 1062 aa13.28□□□□□ -0.28
CLK3-208ENST00000562626 ITGB4P16144 1822 aa13.27□□□□□ -0.28
CLK3-208ENST00000562626 TCP11L2Q8N4U5 519 aa13.27□□□□□ -0.29
CLK3-208ENST00000562626 DOT1LQ8TEK3 1739 aa13.27□□□□□ -0.29
CLK3-208ENST00000562626 ONECUT3O60422 494 aaPredicted RBP13.26□□□□□ -0.29
CLK3-208ENST00000562626 IL13P35225 146 aa13.26□□□□□ -0.29
CLK3-208ENST00000562626 EYA1Q99502 592 aa13.26□□□□□ -0.29
CLK3-208ENST00000562626 TNS1Q9HBL0 1735 aaKnown RBP13.26□□□□□ -0.29
CLK3-208ENST00000562626 BARGINQ6ZT62 677 aa13.25□□□□□ -0.29
CLK3-208ENST00000562626 AEBP1Q8IUX7 1158 aa13.25□□□□□ -0.29
CLK3-208ENST00000562626 SEPT12Q8IYM1 358 aa13.25□□□□□ -0.29
CLK3-208ENST00000562626 IGSF1Q8N6C5 1336 aa13.24□□□□□ -0.29
CLK3-208ENST00000562626 RALBP1Q15311 655 aa13.24□□□□□ -0.29
CLK3-208ENST00000562626 CCDC184Q52MB2 194 aa13.24□□□□□ -0.29
CLK3-208ENST00000562626 EP400Q96L91 3159 aa13.24□□□□□ -0.29
CLK3-208ENST00000562626 SCN11AQ9UI33 1791 aa13.24□□□□□ -0.29
CLK3-208ENST00000562626 OVOS2A0A0G2JMS6 1433 aa13.23□□□□□ -0.29
CLK3-208ENST00000562626 MYBBP1AQ9BQG0 1328 aaKnown RBP13.23□□□□□ -0.29
CLK3-208ENST00000562626 FAM182BQ5T319 152 aa13.23□□□□□ -0.29
CLK3-208ENST00000562626 TNS2Q63HR2 1409 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 183.5 ms