RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 WDR17Q8IZU2 1322 aa14.41□□□□□ -0.1
LDLR-214ENST00000560628 PUS7Q96PZ0 661 aaKnown RBP14.4□□□□□ -0.1
LDLR-214ENST00000560628 AKAP12Q02952 1782 aa14.39□□□□□ -0.11
LDLR-214ENST00000560628 CD163L1Q9NR16 1453 aa14.39□□□□□ -0.11
LDLR-214ENST00000560628 R3HDM1Q15032 1099 aaKnown RBP14.39□□□□□ -0.11
LDLR-214ENST00000560628 DDB1Q16531 1140 aa14.39□□□□□ -0.11
LDLR-214ENST00000560628 CARD10Q9BWT7 1032 aa14.39□□□□□ -0.11
LDLR-214ENST00000560628 USP31Q70CQ4 1352 aa14.38□□□□□ -0.11
LDLR-214ENST00000560628 COL18A1P39060 1754 aa14.38□□□□□ -0.11
LDLR-214ENST00000560628 DISP2A7MBM2 1401 aa14.37□□□□□ -0.11
LDLR-214ENST00000560628 RGPD1P0DJD0 1748 aa14.37□□□□□ -0.11
LDLR-214ENST00000560628 A0A1W2PP64 1363 aa14.36□□□□□ -0.11
LDLR-214ENST00000560628 MARCH10Q8NA82 808 aaPredicted RBP14.36□□□□□ -0.11
LDLR-214ENST00000560628 NLRP2Q9NX02 1062 aa14.36□□□□□ -0.11
LDLR-214ENST00000560628 NFAT5O94916 1531 aa14.36□□□□□ -0.11
LDLR-214ENST00000560628 EDC4Q6P2E9 1401 aaKnown RBP14.35□□□□□ -0.11
LDLR-214ENST00000560628 EXOC5O00471 708 aa14.35□□□□□ -0.11
LDLR-214ENST00000560628 SLC24A1O60721 1099 aa14.35□□□□□ -0.11
LDLR-214ENST00000560628 PTF1AQ7RTS3 328 aa14.35□□□□□ -0.11
LDLR-214ENST00000560628 CDCA7Q9BWT1 371 aaPredicted RBP14.35□□□□□ -0.11
LDLR-214ENST00000560628 C11orf95C9JLR9 678 aaPredicted RBP14.34□□□□□ -0.11
LDLR-214ENST00000560628 FBLN1P23142 703 aa14.34□□□□□ -0.11
LDLR-214ENST00000560628 TMF1P82094 1093 aa14.34□□□□□ -0.11
LDLR-214ENST00000560628 SRCAPQ6ZRS2 3230 aa14.34□□□□□ -0.11
LDLR-214ENST00000560628 MON2Q7Z3U7 1717 aa14.34□□□□□ -0.11
LDLR-214ENST00000560628 TNS1Q9HBL0 1735 aaKnown RBP14.33□□□□□ -0.12
LDLR-214ENST00000560628 RGPD5Q99666 1765 aa14.33□□□□□ -0.12
LDLR-214ENST00000560628 ANKRD24Q8TF21 1146 aa14.33□□□□□ -0.12
LDLR-214ENST00000560628 USP47Q96K76 1375 aa14.33□□□□□ -0.12
LDLR-214ENST00000560628 OVOS2A0A0G2JMS6 1433 aa14.32□□□□□ -0.12
LDLR-214ENST00000560628 OVOS2A0A0J9YW53 1432 aa14.32□□□□□ -0.12
LDLR-214ENST00000560628 OVOS2Q6IE36 1432 aa14.32□□□□□ -0.12
LDLR-214ENST00000560628 LTV1Q96GA3 475 aaPredicted RBP14.32□□□□□ -0.12
LDLR-214ENST00000560628 COG3Q96JB2 828 aa14.32□□□□□ -0.12
LDLR-214ENST00000560628 PARP4Q9UKK3 1724 aaKnown RBP14.32□□□□□ -0.12
LDLR-214ENST00000560628 NBPF14Q5TI25 921 aa14.31□□□□□ -0.12
LDLR-214ENST00000560628 BCL11BQ9C0K0 894 aaPredicted RBP14.31□□□□□ -0.12
LDLR-214ENST00000560628 ERBB3P21860 1342 aa14.31□□□□□ -0.12
LDLR-214ENST00000560628 PARD3Q8TEW0 1356 aa14.31□□□□□ -0.12
LDLR-214ENST00000560628 CCDC7Q96M83 1385 aa14.31□□□□□ -0.12
LDLR-214ENST00000560628 NINLQ9Y2I6 1382 aa14.31□□□□□ -0.12
LDLR-214ENST00000560628 IP6K1Q92551 441 aa14.3□□□□□ -0.12
LDLR-214ENST00000560628 FYB1O15117 783 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 PLSCR1O15162 318 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 KCNQ2O43526 872 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 LRRC37A3O60309 1634 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 IL2RBP14784 551 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 AMPHP49418 695 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 ANKRD36BQ8N2N9 1353 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 GGNBP2Q9H3C7 697 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 TIMELESSQ9UNS1 1208 aa14.28□□□□□ -0.12
LDLR-214ENST00000560628 MAP3K19Q56UN5 1328 aa14.27□□□□□ -0.12
LDLR-214ENST00000560628 CDCA8Q53HL2 280 aa14.27□□□□□ -0.13
LDLR-214ENST00000560628 PROM2Q8N271 834 aa14.27□□□□□ -0.13
LDLR-214ENST00000560628 ACSBG1Q96GR2 724 aa14.27□□□□□ -0.13
LDLR-214ENST00000560628 PEAK1Q9H792 1746 aa14.27□□□□□ -0.13
LDLR-214ENST00000560628 HOXC9P31274 260 aa14.26□□□□□ -0.13
LDLR-214ENST00000560628 RRS1Q15050 365 aaKnown RBP14.26□□□□□ -0.13
LDLR-214ENST00000560628 ABCC6O95255 1503 aa14.25□□□□□ -0.13
LDLR-214ENST00000560628 DDX54Q8TDD1 881 aaKnown RBP14.25□□□□□ -0.13
LDLR-214ENST00000560628 USP54Q70EL1 1684 aa14.24□□□□□ -0.13
LDLR-214ENST00000560628 CLSPNQ9HAW4 1339 aa14.24□□□□□ -0.13
LDLR-214ENST00000560628 CCER1Q8TC90 406 aaPredicted RBP14.24□□□□□ -0.13
LDLR-214ENST00000560628 POLR3GLQ9BT43 218 aa14.24□□□□□ -0.13
LDLR-214ENST00000560628 CARD14Q9BXL6 1004 aa14.24□□□□□ -0.13
LDLR-214ENST00000560628 LTN1O94822 1766 aa14.24□□□□□ -0.13
LDLR-214ENST00000560628 BCL9O00512 1426 aa14.24□□□□□ -0.13
LDLR-214ENST00000560628 ANO8Q9HCE9 1232 aaPredicted RBP14.23□□□□□ -0.13
LDLR-214ENST00000560628 TNS2Q63HR2 1409 aa14.23□□□□□ -0.13
LDLR-214ENST00000560628 TXNRD1Q16881 649 aa14.22□□□□□ -0.13
LDLR-214ENST00000560628 LRP5O75197 1615 aa14.22□□□□□ -0.13
LDLR-214ENST00000560628 SBF2Q86WG5 1849 aa14.22□□□□□ -0.13
LDLR-214ENST00000560628 WNK3Q9BYP7 1800 aa14.22□□□□□ -0.13
LDLR-214ENST00000560628 RREB1Q92766 1687 aa14.21□□□□□ -0.13
LDLR-214ENST00000560628 NUP188Q5SRE5 1749 aa14.21□□□□□ -0.14
LDLR-214ENST00000560628 NBPF6Q5VWK0 638 aa14.2□□□□□ -0.14
LDLR-214ENST00000560628 USHBP1Q8N6Y0 703 aa14.2□□□□□ -0.14
LDLR-214ENST00000560628 NBPF4Q96M43 638 aa14.2□□□□□ -0.14
LDLR-214ENST00000560628 PDGFDQ9GZP0 370 aaPredicted RBP14.2□□□□□ -0.14
LDLR-214ENST00000560628 HSP90AB2PQ58FF8 381 aa14.19□□□□□ -0.14
LDLR-214ENST00000560628 SPON1Q9HCB6 807 aa14.19□□□□□ -0.14
LDLR-214ENST00000560628 ZCRB1Q8TBF4 217 aaKnown RBP14.18□□□□□ -0.14
LDLR-214ENST00000560628 STK32BQ9NY57 414 aa14.18□□□□□ -0.14
LDLR-214ENST00000560628 NSD3Q9BZ95 1437 aa14.17□□□□□ -0.14
LDLR-214ENST00000560628 PPM1GO15355 546 aaPredicted RBP14.17□□□□□ -0.14
LDLR-214ENST00000560628 HSPA5P11021 654 aaKnown RBP14.17□□□□□ -0.14
LDLR-214ENST00000560628 SYTL4Q96C24 671 aaPredicted RBP14.17□□□□□ -0.14
LDLR-214ENST00000560628 PPP1R1BQ9UD71 204 aaPredicted RBP14.17□□□□□ -0.14
LDLR-214ENST00000560628 KAT6BQ8WYB5 2073 aa14.17□□□□□ -0.14
LDLR-214ENST00000560628 ZBTB7AO95365 584 aa14.16□□□□□ -0.14
LDLR-214ENST00000560628 PRIM1P49642 420 aaKnown RBP14.16□□□□□ -0.14
LDLR-214ENST00000560628 EIF4G2P78344 907 aaKnown RBP eCLIP14.16□□□□□ -0.14
LDLR-214ENST00000560628 SLC15A2Q16348 729 aa14.16□□□□□ -0.14
LDLR-214ENST00000560628 EMILIN1Q9Y6C2 1016 aa14.16□□□□□ -0.14
LDLR-214ENST00000560628 RTL1A6NKG5 1358 aa14.15□□□□□ -0.14
LDLR-214ENST00000560628 RAPGEF4Q8WZA2 1011 aa14.15□□□□□ -0.14
LDLR-214ENST00000560628 ATF5Q9Y2D1 282 aaPredicted RBP14.15□□□□□ -0.14
LDLR-214ENST00000560628 LRRC4BQ9NT99 713 aa14.14□□□□□ -0.15
LDLR-214ENST00000560628 INSRP06213 1382 aa14.13□□□□□ -0.15
LDLR-214ENST00000560628 TATP17735 454 aaPredicted RBP14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms