RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 EXOC5O00471 708 aa17.64■□□□□ 0.41
SNX1-209ENST00000559961 CAMKK2Q96RR4 588 aa17.64■□□□□ 0.41
SNX1-209ENST00000559961 CARD10Q9BWT7 1032 aa17.64■□□□□ 0.41
SNX1-209ENST00000559961 AXIN2Q9Y2T1 843 aa17.64■□□□□ 0.41
SNX1-209ENST00000559961 DISP2A7MBM2 1401 aa17.64■□□□□ 0.41
SNX1-209ENST00000559961 SLIT3O75094 1523 aa17.63■□□□□ 0.41
SNX1-209ENST00000559961 RGPD1P0DJD0 1748 aa17.62■□□□□ 0.41
SNX1-209ENST00000559961 ST20-MTHFSA0A0A6YYL1 179 aa17.62■□□□□ 0.41
SNX1-209ENST00000559961 NME9Q86XW9 330 aa17.62■□□□□ 0.41
SNX1-209ENST00000559961 NLRP2Q9NX02 1062 aa17.62■□□□□ 0.41
SNX1-209ENST00000559961 TMF1P82094 1093 aa17.61■□□□□ 0.41
SNX1-209ENST00000559961 CDCA8Q53HL2 280 aa17.61■□□□□ 0.41
SNX1-209ENST00000559961 NINLQ9Y2I6 1382 aa17.61■□□□□ 0.41
SNX1-209ENST00000559961 OVOS2A0A0G2JMS6 1433 aa17.61■□□□□ 0.41
SNX1-209ENST00000559961 OVOS2A0A0J9YW53 1432 aa17.61■□□□□ 0.41
SNX1-209ENST00000559961 OVOS2Q6IE36 1432 aa17.61■□□□□ 0.41
SNX1-209ENST00000559961 COG3Q96JB2 828 aa17.6■□□□□ 0.41
SNX1-209ENST00000559961 USP31Q70CQ4 1352 aa17.6■□□□□ 0.41
SNX1-209ENST00000559961 CCDC7Q96M83 1385 aa17.6■□□□□ 0.41
SNX1-209ENST00000559961 LMO7Q8WWI1 1683 aa17.6■□□□□ 0.41
SNX1-209ENST00000559961 EDC4Q6P2E9 1401 aaKnown RBP17.59■□□□□ 0.41
SNX1-209ENST00000559961 BCL11BQ9C0K0 894 aaPredicted RBP17.59■□□□□ 0.41
SNX1-209ENST00000559961 PIK3C2AO00443 1686 aa17.57■□□□□ 0.4
SNX1-209ENST00000559961 TIMELESSQ9UNS1 1208 aa17.56■□□□□ 0.4
SNX1-209ENST00000559961 PLSCR1O15162 318 aa17.55■□□□□ 0.4
SNX1-209ENST00000559961 ANKRD24Q8TF21 1146 aa17.55■□□□□ 0.4
SNX1-209ENST00000559961 PCGF6Q9BYE7 350 aa17.55■□□□□ 0.4
SNX1-209ENST00000559961 A0A1W2PP64 1363 aa17.54■□□□□ 0.4
SNX1-209ENST00000559961 IL2RBP14784 551 aa17.54■□□□□ 0.4
SNX1-209ENST00000559961 AMPHP49418 695 aa17.54■□□□□ 0.4
SNX1-209ENST00000559961 MARCH10Q8NA82 808 aaPredicted RBP17.54■□□□□ 0.4
SNX1-209ENST00000559961 TESK2Q96S53 571 aa17.54■□□□□ 0.4
SNX1-209ENST00000559961 PPP1R1BQ9UD71 204 aaPredicted RBP17.53■□□□□ 0.4
SNX1-209ENST00000559961 AKAP12Q02952 1782 aa17.53■□□□□ 0.4
SNX1-209ENST00000559961 ERBB3P21860 1342 aa17.52■□□□□ 0.4
SNX1-209ENST00000559961 IP6K1Q92551 441 aa17.52■□□□□ 0.4
SNX1-209ENST00000559961 LTV1Q96GA3 475 aaPredicted RBP17.52■□□□□ 0.4
SNX1-209ENST00000559961 ABCC6O95255 1503 aa17.52■□□□□ 0.39
SNX1-209ENST00000559961 DCAF8L1A6NGE4 600 aa17.51■□□□□ 0.39
SNX1-209ENST00000559961 USP47Q96K76 1375 aa17.51■□□□□ 0.39
SNX1-209ENST00000559961 PARP4Q9UKK3 1724 aaKnown RBP17.5■□□□□ 0.39
SNX1-209ENST00000559961 NFAT5O94916 1531 aa17.5■□□□□ 0.39
SNX1-209ENST00000559961 CD163L1Q9NR16 1453 aa17.5■□□□□ 0.39
SNX1-209ENST00000559961 CLSPNQ9HAW4 1339 aa17.49■□□□□ 0.39
SNX1-209ENST00000559961 SPON1Q9HCB6 807 aa17.49■□□□□ 0.39
SNX1-209ENST00000559961 TNS1Q9HBL0 1735 aaKnown RBP17.48■□□□□ 0.39
SNX1-209ENST00000559961 STK32BQ9NY57 414 aa17.48■□□□□ 0.39
SNX1-209ENST00000559961 ANKRD36BQ8N2N9 1353 aa17.48■□□□□ 0.39
SNX1-209ENST00000559961 BCL9O00512 1426 aa17.47■□□□□ 0.39
SNX1-209ENST00000559961 COL18A1P39060 1754 aa17.47■□□□□ 0.39
SNX1-209ENST00000559961 MON2Q7Z3U7 1717 aa17.47■□□□□ 0.39
SNX1-209ENST00000559961 SRCAPQ6ZRS2 3230 aa17.46■□□□□ 0.39
SNX1-209ENST00000559961 DDX54Q8TDD1 881 aaKnown RBP17.46■□□□□ 0.39
SNX1-209ENST00000559961 ACSBG1Q96GR2 724 aa17.46■□□□□ 0.39
SNX1-209ENST00000559961 KCNQ2O43526 872 aa17.45■□□□□ 0.38
SNX1-209ENST00000559961 TXNRD1Q16881 649 aa17.45■□□□□ 0.38
SNX1-209ENST00000559961 LRP5O75197 1615 aa17.45■□□□□ 0.38
SNX1-209ENST00000559961 TNS2Q63HR2 1409 aa17.45■□□□□ 0.38
SNX1-209ENST00000559961 HOXC9P31274 260 aa17.44■□□□□ 0.38
SNX1-209ENST00000559961 GGNBP2Q9H3C7 697 aa17.44■□□□□ 0.38
SNX1-209ENST00000559961 MAP3K19Q56UN5 1328 aa17.44■□□□□ 0.38
SNX1-209ENST00000559961 POLR3GLQ9BT43 218 aa17.43■□□□□ 0.38
SNX1-209ENST00000559961 SMG6Q86US8 1419 aaKnown RBP17.43■□□□□ 0.38
SNX1-209ENST00000559961 LRRC37A3O60309 1634 aa17.43■□□□□ 0.38
SNX1-209ENST00000559961 FYB1O15117 783 aa17.42■□□□□ 0.38
SNX1-209ENST00000559961 CCER1Q8TC90 406 aaPredicted RBP17.42■□□□□ 0.38
SNX1-209ENST00000559961 PTF1AQ7RTS3 328 aa17.41■□□□□ 0.38
SNX1-209ENST00000559961 RAPGEF4Q8WZA2 1011 aa17.41■□□□□ 0.38
SNX1-209ENST00000559961 RRS1Q15050 365 aaKnown RBP17.4■□□□□ 0.38
SNX1-209ENST00000559961 ZCRB1Q8TBF4 217 aaKnown RBP17.4■□□□□ 0.38
SNX1-209ENST00000559961 SYTL4Q96C24 671 aaPredicted RBP17.4■□□□□ 0.38
SNX1-209ENST00000559961 SLC15A2Q16348 729 aa17.39■□□□□ 0.37
SNX1-209ENST00000559961 RTL1A6NKG5 1358 aa17.39■□□□□ 0.37
SNX1-209ENST00000559961 HMGB2P26583 209 aaKnown RBP17.38■□□□□ 0.37
SNX1-209ENST00000559961 PROM2Q8N271 834 aa17.38■□□□□ 0.37
SNX1-209ENST00000559961 CGNL1Q0VF96 1302 aa17.38■□□□□ 0.37
SNX1-209ENST00000559961 USP54Q70EL1 1684 aa17.37■□□□□ 0.37
SNX1-209ENST00000559961 TATP17735 454 aaPredicted RBP17.37■□□□□ 0.37
SNX1-209ENST00000559961 FBLN1P23142 703 aa17.37■□□□□ 0.37
SNX1-209ENST00000559961 PEAK1Q9H792 1746 aa17.37■□□□□ 0.37
SNX1-209ENST00000559961 RGPD5Q99666 1765 aa17.37■□□□□ 0.37
SNX1-209ENST00000559961 PPM1GO15355 546 aaPredicted RBP17.36■□□□□ 0.37
SNX1-209ENST00000559961 EIF4G2P78344 907 aaKnown RBP eCLIP17.36■□□□□ 0.37
SNX1-209ENST00000559961 ANO8Q9HCE9 1232 aaPredicted RBP17.36■□□□□ 0.37
SNX1-209ENST00000559961 RREB1Q92766 1687 aa17.36■□□□□ 0.37
SNX1-209ENST00000559961 ZBTB7AO95365 584 aa17.35■□□□□ 0.37
SNX1-209ENST00000559961 LTN1O94822 1766 aa17.35■□□□□ 0.37
SNX1-209ENST00000559961 SLC27A3Q5K4L6 730 aa17.34■□□□□ 0.37
SNX1-209ENST00000559961 NUP188Q5SRE5 1749 aa17.34■□□□□ 0.37
SNX1-209ENST00000559961 ATF5Q9Y2D1 282 aaPredicted RBP17.34■□□□□ 0.37
SNX1-209ENST00000559961 FLT4P35916 1363 aa17.33■□□□□ 0.36
SNX1-209ENST00000559961 KIF24Q5T7B8 1368 aa17.33■□□□□ 0.36
SNX1-209ENST00000559961 PRIM1P49642 420 aaKnown RBP17.33■□□□□ 0.36
SNX1-209ENST00000559961 NBPF6Q5VWK0 638 aa17.33■□□□□ 0.36
SNX1-209ENST00000559961 NBPF4Q96M43 638 aa17.33■□□□□ 0.36
SNX1-209ENST00000559961 HSP90AB2PQ58FF8 381 aa17.32■□□□□ 0.36
SNX1-209ENST00000559961 MTFR1LQ9H019 292 aa17.32■□□□□ 0.36
SNX1-209ENST00000559961 WNK3Q9BYP7 1800 aa17.32■□□□□ 0.36
SNX1-209ENST00000559961 INSRP06213 1382 aa17.31■□□□□ 0.36
SNX1-209ENST00000559961 RGPD3A6NKT7 1758 aaPredicted RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms