RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 NUDCQ9Y266 331 aa23.02■■□□□ 1.28
CHRNA3-206ENST00000559658 ARHGEF10O15013 1369 aa23.02■■□□□ 1.28
CHRNA3-206ENST00000559658 KCNH5Q8NCM2 988 aa23.02■■□□□ 1.28
CHRNA3-206ENST00000559658 RGPD2P0DJD1 1756 aa23.01■■□□□ 1.27
CHRNA3-206ENST00000559658 PLEKHF1Q96S99 279 aa23■■□□□ 1.27
CHRNA3-206ENST00000559658 ZC3H6P61129 1189 aaKnown RBP23■■□□□ 1.27
CHRNA3-206ENST00000559658 PIP4K2BP78356 416 aa23■■□□□ 1.27
CHRNA3-206ENST00000559658 ARHGEF25Q86VW2 580 aa23■■□□□ 1.27
CHRNA3-206ENST00000559658 AEBP1Q8IUX7 1158 aa23■■□□□ 1.27
CHRNA3-206ENST00000559658 RTL1A6NKG5 1358 aa23■■□□□ 1.27
CHRNA3-206ENST00000559658 PHLPP1O60346 1717 aa22.99■■□□□ 1.27
CHRNA3-206ENST00000559658 RSPH6AQ9H0K4 717 aa22.99■■□□□ 1.27
CHRNA3-206ENST00000559658 RRP7AQ9Y3A4 280 aaKnown RBP22.99■■□□□ 1.27
CHRNA3-206ENST00000559658 COL16A1Q07092 1604 aaPredicted RBP22.99■■□□□ 1.27
CHRNA3-206ENST00000559658 COL18A1P39060 1754 aa22.98■■□□□ 1.27
CHRNA3-206ENST00000559658 RUNDC1Q96C34 613 aa22.98■■□□□ 1.27
CHRNA3-206ENST00000559658 LTV1Q96GA3 475 aaPredicted RBP22.98■■□□□ 1.27
CHRNA3-206ENST00000559658 KIF24Q5T7B8 1368 aa22.98■■□□□ 1.27
CHRNA3-206ENST00000559658 PRKAR2BP31323 418 aa22.96■■□□□ 1.27
CHRNA3-206ENST00000559658 TCP11L2Q8N4U5 519 aa22.96■■□□□ 1.27
CHRNA3-206ENST00000559658 IP6K1Q92551 441 aa22.96■■□□□ 1.27
CHRNA3-206ENST00000559658 AXIN2Q9Y2T1 843 aa22.96■■□□□ 1.27
CHRNA3-206ENST00000559658 UBAP1LF5GYI3 381 aa22.95■■□□□ 1.26
CHRNA3-206ENST00000559658 NEUROD2Q15784 382 aa22.94■■□□□ 1.26
CHRNA3-206ENST00000559658 KIAA0232Q92628 1395 aa22.93■■□□□ 1.26
CHRNA3-206ENST00000559658 TOM1O60784 492 aa22.93■■□□□ 1.26
CHRNA3-206ENST00000559658 SULT6B1Q6IMI4 303 aa22.93■■□□□ 1.26
CHRNA3-206ENST00000559658 CDCA7LQ96GN5 454 aa22.93■■□□□ 1.26
CHRNA3-206ENST00000559658 PHACTR3Q96KR7 559 aa22.93■■□□□ 1.26
CHRNA3-206ENST00000559658 EYA1Q99502 592 aa22.93■■□□□ 1.26
CHRNA3-206ENST00000559658 ZNF521Q96K83 1311 aa22.93■■□□□ 1.26
CHRNA3-206ENST00000559658 CHRNA2Q15822 529 aa22.92■■□□□ 1.26
CHRNA3-206ENST00000559658 CERKQ8TCT0 537 aa22.92■■□□□ 1.26
CHRNA3-206ENST00000559658 COL22A1Q8NFW1 1626 aaPredicted RBP22.91■■□□□ 1.26
CHRNA3-206ENST00000559658 FCHSD2O94868 740 aa22.91■■□□□ 1.26
CHRNA3-206ENST00000559658 USHBP1Q8N6Y0 703 aa22.91■■□□□ 1.26
CHRNA3-206ENST00000559658 IGSF1Q8N6C5 1336 aa22.91■■□□□ 1.26
CHRNA3-206ENST00000559658 DLG5Q8TDM6 1919 aa22.9■■□□□ 1.26
CHRNA3-206ENST00000559658 LRRC59Q96AG4 307 aaKnown RBP22.9■■□□□ 1.26
CHRNA3-206ENST00000559658 MAPK8IP3Q9UPT6 1336 aa22.89■■□□□ 1.25
CHRNA3-206ENST00000559658 LMO7Q8WWI1 1683 aa22.88■■□□□ 1.25
CHRNA3-206ENST00000559658 CAMTA1Q9Y6Y1 1673 aa22.88■■□□□ 1.25
CHRNA3-206ENST00000559658 CPDO75976 1380 aa22.88■■□□□ 1.25
CHRNA3-206ENST00000559658 KDRP35968 1356 aa22.88■■□□□ 1.25
CHRNA3-206ENST00000559658 SPINK5Q9NQ38 1064 aaPredicted RBP22.87■■□□□ 1.25
CHRNA3-206ENST00000559658 TMPOP42166 694 aaKnown RBP22.86■■□□□ 1.25
CHRNA3-206ENST00000559658 NBPF6Q5VWK0 638 aa22.86■■□□□ 1.25
CHRNA3-206ENST00000559658 NBPF4Q96M43 638 aa22.86■■□□□ 1.25
CHRNA3-206ENST00000559658 ANKRD24Q8TF21 1146 aa22.85■■□□□ 1.25
CHRNA3-206ENST00000559658 WWC1Q8IX03 1113 aa22.85■■□□□ 1.25
CHRNA3-206ENST00000559658 PHF23Q9BUL5 403 aaPredicted RBP22.85■■□□□ 1.25
CHRNA3-206ENST00000559658 ERBB3P21860 1342 aa22.84■■□□□ 1.25
CHRNA3-206ENST00000559658 ABCC6O95255 1503 aa22.84■■□□□ 1.25
CHRNA3-206ENST00000559658 HAP1P54257 671 aaPredicted RBP22.83■■□□□ 1.25
CHRNA3-206ENST00000559658 TRIM35Q9UPQ4 493 aa22.83■■□□□ 1.24
CHRNA3-206ENST00000559658 FAM208AQ9UK61 1670 aaKnown RBP22.82■■□□□ 1.24
CHRNA3-206ENST00000559658 PRDM11Q9NQV5 511 aa22.82■■□□□ 1.24
CHRNA3-206ENST00000559658 NCAPD2Q15021 1401 aa22.8■■□□□ 1.24
CHRNA3-206ENST00000559658 RIPK4P57078 832 aa22.8■■□□□ 1.24
CHRNA3-206ENST00000559658 NFE2L2Q16236 605 aa22.79■■□□□ 1.24
CHRNA3-206ENST00000559658 PNNQ9H307 717 aaKnown RBP22.79■■□□□ 1.24
CHRNA3-206ENST00000559658 GOLGA2Q08379 1002 aa22.78■■□□□ 1.24
CHRNA3-206ENST00000559658 COL5A2P05997 1499 aaPredicted RBP22.78■■□□□ 1.24
CHRNA3-206ENST00000559658 PDE3BQ13370 1112 aa22.77■■□□□ 1.24
CHRNA3-206ENST00000559658 THUMPD2Q9BTF0 503 aaKnown RBP22.77■■□□□ 1.24
CHRNA3-206ENST00000559658 FAM83GA6ND36 823 aa22.77■■□□□ 1.24
CHRNA3-206ENST00000559658 CCDC27Q2M243 656 aa22.77■■□□□ 1.24
CHRNA3-206ENST00000559658 SLFN5Q08AF3 891 aa22.75■■□□□ 1.23
CHRNA3-206ENST00000559658 MTHFSDQ2M296 383 aaKnown RBP22.75■■□□□ 1.23
CHRNA3-206ENST00000559658 DUSP27Q5VZP5 1158 aa22.75■■□□□ 1.23
CHRNA3-206ENST00000559658 NEFMP07197 916 aa22.74■■□□□ 1.23
CHRNA3-206ENST00000559658 NGEFQ8N5V2 710 aa22.74■■□□□ 1.23
CHRNA3-206ENST00000559658 PLCH1Q4KWH8 1693 aa22.74■■□□□ 1.23
CHRNA3-206ENST00000559658 COL14A1Q05707 1796 aaKnown RBP22.74■■□□□ 1.23
CHRNA3-206ENST00000559658 DCTN1Q14203 1278 aa22.73■■□□□ 1.23
CHRNA3-206ENST00000559658 CSB-PGBD3P0DP91 1061 aa22.73■■□□□ 1.23
CHRNA3-206ENST00000559658 NLRP2Q9NX02 1062 aa22.73■■□□□ 1.23
CHRNA3-206ENST00000559658 TRMT2AQ8IZ69 625 aaKnown RBP22.72■■□□□ 1.23
CHRNA3-206ENST00000559658 MEGF6O75095 1541 aa22.72■■□□□ 1.23
CHRNA3-206ENST00000559658 NUTM2BA6NNL0 878 aaPredicted RBP22.71■■□□□ 1.23
CHRNA3-206ENST00000559658 NUTM2EB1AL46 878 aaPredicted RBP22.71■■□□□ 1.23
CHRNA3-206ENST00000559658 ADAMTS2O95450 1211 aa22.71■■□□□ 1.23
CHRNA3-206ENST00000559658 NCBP3Q53F19 620 aaKnown RBP22.71■■□□□ 1.23
CHRNA3-206ENST00000559658 NUTM2AQ8IVF1 878 aaPredicted RBP22.71■■□□□ 1.23
CHRNA3-206ENST00000559658 WDR63Q8IWG1 891 aa22.69■■□□□ 1.22
CHRNA3-206ENST00000559658 SUPT16HQ9Y5B9 1047 aaKnown RBP22.69■■□□□ 1.22
CHRNA3-206ENST00000559658 WDR17Q8IZU2 1322 aa22.69■■□□□ 1.22
CHRNA3-206ENST00000559658 STRN4Q9NRL3 753 aa22.68■■□□□ 1.22
CHRNA3-206ENST00000559658 E9PSI1 815 aa22.68■■□□□ 1.22
CHRNA3-206ENST00000559658 LARP1Q6PKG0 1096 aaKnown RBP22.68■■□□□ 1.22
CHRNA3-206ENST00000559658 MCM10Q7L590 875 aa22.68■■□□□ 1.22
CHRNA3-206ENST00000559658 TSR2Q969E8 191 aaKnown RBP22.68■■□□□ 1.22
CHRNA3-206ENST00000559658 BTG4Q9NY30 223 aa22.68■■□□□ 1.22
CHRNA3-206ENST00000559658 NRAPQ86VF7 1730 aa22.67■■□□□ 1.22
CHRNA3-206ENST00000559658 HSPA1LP34931 641 aa22.67■■□□□ 1.22
CHRNA3-206ENST00000559658 LRRC37A3O60309 1634 aa22.66■■□□□ 1.22
CHRNA3-206ENST00000559658 GTF3C3Q9Y5Q9 886 aa22.66■■□□□ 1.22
CHRNA3-206ENST00000559658 LRP6O75581 1613 aa22.65■■□□□ 1.22
CHRNA3-206ENST00000559658 VIRMAQ69YN4 1812 aaKnown RBP22.65■■□□□ 1.22
CHRNA3-206ENST00000559658 JCADQ9P266 1359 aa22.65■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms