RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 PLCH1Q4KWH8 1693 aa16.86■□□□□ 0.29
TPM1-216ENST00000558910 EVA1CP58658 441 aa16.86■□□□□ 0.29
TPM1-216ENST00000558910 VPS72Q15906 364 aa16.86■□□□□ 0.29
TPM1-216ENST00000558910 FAM98CQ17RN3 349 aaKnown RBP16.86■□□□□ 0.29
TPM1-216ENST00000558910 TTC21BQ7Z4L5 1316 aa16.86■□□□□ 0.29
TPM1-216ENST00000558910 USP47Q96K76 1375 aa16.86■□□□□ 0.29
TPM1-216ENST00000558910 GABBR2O75899 941 aa16.85■□□□□ 0.29
TPM1-216ENST00000558910 GCP02774 474 aa16.85■□□□□ 0.29
TPM1-216ENST00000558910 SEPT12Q8IYM1 358 aa16.85■□□□□ 0.29
TPM1-216ENST00000558910 HDGFL2Q7Z4V5 671 aaPredicted RBP16.84■□□□□ 0.29
TPM1-216ENST00000558910 TESK2Q96S53 571 aa16.84■□□□□ 0.29
TPM1-216ENST00000558910 CDK12Q9NYV4 1490 aaPredicted RBP16.84■□□□□ 0.29
TPM1-216ENST00000558910 CLSPNQ9HAW4 1339 aa16.83■□□□□ 0.28
TPM1-216ENST00000558910 GLI3P10071 1580 aa16.82■□□□□ 0.28
TPM1-216ENST00000558910 NME9Q86XW9 330 aa16.82■□□□□ 0.28
TPM1-216ENST00000558910 PHRF1Q9P1Y6 1649 aaKnown RBP16.81■□□□□ 0.28
TPM1-216ENST00000558910 TMF1P82094 1093 aa16.81■□□□□ 0.28
TPM1-216ENST00000558910 SBNO2Q9Y2G9 1366 aa16.8■□□□□ 0.28
TPM1-216ENST00000558910 COL14A1Q05707 1796 aaKnown RBP16.8■□□□□ 0.28
TPM1-216ENST00000558910 USP19O94966 1318 aa16.8■□□□□ 0.28
TPM1-216ENST00000558910 CRYBG1Q9Y4K1 1723 aa16.8■□□□□ 0.28
TPM1-216ENST00000558910 FAM182BQ5T319 152 aa16.8■□□□□ 0.28
TPM1-216ENST00000558910 LARP1Q6PKG0 1096 aaKnown RBP16.79■□□□□ 0.28
TPM1-216ENST00000558910 ZNF579Q8NAF0 562 aaKnown RBP16.79■□□□□ 0.28
TPM1-216ENST00000558910 TERF2IPQ9NYB0 399 aa16.79■□□□□ 0.28
TPM1-216ENST00000558910 TIMELESSQ9UNS1 1208 aa16.79■□□□□ 0.28
TPM1-216ENST00000558910 NRKQ7Z2Y5 1582 aa16.78■□□□□ 0.28
TPM1-216ENST00000558910 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.78■□□□□ 0.28
TPM1-216ENST00000558910 NWD2Q9ULI1 1742 aa16.77■□□□□ 0.28
TPM1-216ENST00000558910 CPSF1Q10570 1443 aaKnown RBP16.77■□□□□ 0.27
TPM1-216ENST00000558910 SSH2Q76I76 1423 aa16.77■□□□□ 0.27
TPM1-216ENST00000558910 A0A1W2PP64 1363 aa16.77■□□□□ 0.27
TPM1-216ENST00000558910 SPATA31A5Q5VU36 1347 aa16.76■□□□□ 0.27
TPM1-216ENST00000558910 SPATA31A7Q8IWB4 1347 aa16.76■□□□□ 0.27
TPM1-216ENST00000558910 TTC21AQ8NDW8 1320 aa16.76■□□□□ 0.27
TPM1-216ENST00000558910 PIK3C2AO00443 1686 aa16.76■□□□□ 0.27
TPM1-216ENST00000558910 NRAPQ86VF7 1730 aa16.76■□□□□ 0.27
TPM1-216ENST00000558910 BRD4O60885 1362 aaPredicted RBP16.76■□□□□ 0.27
TPM1-216ENST00000558910 CD163L1Q9NR16 1453 aa16.75■□□□□ 0.27
TPM1-216ENST00000558910 AKAP12Q02952 1782 aa16.75■□□□□ 0.27
TPM1-216ENST00000558910 CSB-PGBD3P0DP91 1061 aa16.75■□□□□ 0.27
TPM1-216ENST00000558910 VASPP50552 380 aaPredicted RBP16.75■□□□□ 0.27
TPM1-216ENST00000558910 KRT27Q7Z3Y8 459 aa16.75■□□□□ 0.27
TPM1-216ENST00000558910 TSPYL2Q9H2G4 693 aaPredicted RBP16.74■□□□□ 0.27
TPM1-216ENST00000558910 CAMTA1Q9Y6Y1 1673 aa16.74■□□□□ 0.27
TPM1-216ENST00000558910 SPATA31A1Q5TZJ5 1347 aa16.73■□□□□ 0.27
TPM1-216ENST00000558910 HSPA5P11021 654 aaKnown RBP16.73■□□□□ 0.27
TPM1-216ENST00000558910 AXIN2Q9Y2T1 843 aa16.73■□□□□ 0.27
TPM1-216ENST00000558910 EP400Q96L91 3159 aa16.73■□□□□ 0.27
TPM1-216ENST00000558910 FBLN1P23142 703 aa16.72■□□□□ 0.27
TPM1-216ENST00000558910 TOM1L2Q6ZVM7 507 aa16.72■□□□□ 0.27
TPM1-216ENST00000558910 KCNH5Q8NCM2 988 aa16.72■□□□□ 0.27
TPM1-216ENST00000558910 PHF12Q96QT6 1004 aa16.72■□□□□ 0.27
TPM1-216ENST00000558910 ZBTB47Q9UFB7 747 aaPredicted RBP16.72■□□□□ 0.27
TPM1-216ENST00000558910 CPDO75976 1380 aa16.72■□□□□ 0.27
TPM1-216ENST00000558910 BRWD3Q6RI45 1802 aa16.71■□□□□ 0.27
TPM1-216ENST00000558910 EIF4G2P78344 907 aaKnown RBP eCLIP16.71■□□□□ 0.27
TPM1-216ENST00000558910 RASEFQ8IZ41 740 aa16.71■□□□□ 0.27
TPM1-216ENST00000558910 SLC24A1O60721 1099 aa16.7■□□□□ 0.26
TPM1-216ENST00000558910 ARHGEF25Q86VW2 580 aa16.7■□□□□ 0.26
TPM1-216ENST00000558910 LTV1Q96GA3 475 aaPredicted RBP16.7■□□□□ 0.26
TPM1-216ENST00000558910 MON2Q7Z3U7 1717 aa16.7■□□□□ 0.26
TPM1-216ENST00000558910 SLIT3O75094 1523 aa16.7■□□□□ 0.26
TPM1-216ENST00000558910 EDC4Q6P2E9 1401 aaKnown RBP16.7■□□□□ 0.26
TPM1-216ENST00000558910 ONECUT3O60422 494 aaPredicted RBP16.69■□□□□ 0.26
TPM1-216ENST00000558910 CDCA8Q53HL2 280 aa16.69■□□□□ 0.26
TPM1-216ENST00000558910 TCP11L2Q8N4U5 519 aa16.69■□□□□ 0.26
TPM1-216ENST00000558910 PUS7Q96PZ0 661 aaKnown RBP16.69■□□□□ 0.26
TPM1-216ENST00000558910 GGNBP2Q9H3C7 697 aa16.69■□□□□ 0.26
TPM1-216ENST00000558910 SF3B2Q13435 895 aaKnown RBP16.68■□□□□ 0.26
TPM1-216ENST00000558910 DEFB132Q7Z7B7 95 aa16.68■□□□□ 0.26
TPM1-216ENST00000558910 COG3Q96JB2 828 aa16.68■□□□□ 0.26
TPM1-216ENST00000558910 COL5A2P05997 1499 aaPredicted RBP16.67■□□□□ 0.26
TPM1-216ENST00000558910 AATKQ6ZMQ8 1374 aa16.67■□□□□ 0.26
TPM1-216ENST00000558910 PDE3BQ13370 1112 aa16.67■□□□□ 0.26
TPM1-216ENST00000558910 LMO7Q8WWI1 1683 aa16.65■□□□□ 0.26
TPM1-216ENST00000558910 ANKRD36BQ8N2N9 1353 aa16.65■□□□□ 0.26
TPM1-216ENST00000558910 NINLQ9Y2I6 1382 aa16.65■□□□□ 0.26
TPM1-216ENST00000558910 NLRP2Q9NX02 1062 aa16.65■□□□□ 0.26
TPM1-216ENST00000558910 USP31Q70CQ4 1352 aa16.64■□□□□ 0.26
TPM1-216ENST00000558910 NUBP1P53384 320 aa16.64■□□□□ 0.25
TPM1-216ENST00000558910 CRB1P82279 1406 aa16.63■□□□□ 0.25
TPM1-216ENST00000558910 CLCN6P51797 869 aa16.63■□□□□ 0.25
TPM1-216ENST00000558910 RRS1Q15050 365 aaKnown RBP16.63■□□□□ 0.25
TPM1-216ENST00000558910 NFAT5O94916 1531 aa16.63■□□□□ 0.25
TPM1-216ENST00000558910 WDR17Q8IZU2 1322 aa16.63■□□□□ 0.25
TPM1-216ENST00000558910 TRIM37O94972 964 aa16.62■□□□□ 0.25
TPM1-216ENST00000558910 AMPHP49418 695 aa16.62■□□□□ 0.25
TPM1-216ENST00000558910 BARGINQ6ZT62 677 aa16.62■□□□□ 0.25
TPM1-216ENST00000558910 ANKRD24Q8TF21 1146 aa16.62■□□□□ 0.25
TPM1-216ENST00000558910 CARD14Q9BXL6 1004 aa16.62■□□□□ 0.25
TPM1-216ENST00000558910 NSD3Q9BZ95 1437 aa16.62■□□□□ 0.25
TPM1-216ENST00000558910 RGPD5Q99666 1765 aa16.61■□□□□ 0.25
TPM1-216ENST00000558910 FYB1O15117 783 aa16.61■□□□□ 0.25
TPM1-216ENST00000558910 GALR2O43603 387 aaPredicted RBP16.61■□□□□ 0.25
TPM1-216ENST00000558910 OVOS2A0A0J9YW53 1432 aa16.61■□□□□ 0.25
TPM1-216ENST00000558910 OVOS2Q6IE36 1432 aa16.61■□□□□ 0.25
TPM1-216ENST00000558910 C11orf95C9JLR9 678 aaPredicted RBP16.6■□□□□ 0.25
TPM1-216ENST00000558910 BLMP54132 1417 aaPredicted RBP16.6■□□□□ 0.25
TPM1-216ENST00000558910 COL18A1P39060 1754 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms