RNA–Protein interactions for RNA: ENST00000558324.1

HERC1-202, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 828 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-202ENST00000558324 THRAP3Q9Y2W1 955 aaKnown RBP16.76■□□□□ 0.27
HERC1-202ENST00000558324 CSB-PGBD3P0DP91 1061 aa16.75■□□□□ 0.27
HERC1-202ENST00000558324 USP31Q70CQ4 1352 aa16.75■□□□□ 0.27
HERC1-202ENST00000558324 WDR17Q8IZU2 1322 aa16.74■□□□□ 0.27
HERC1-202ENST00000558324 TRIM37O94972 964 aa16.74■□□□□ 0.27
HERC1-202ENST00000558324 EN1Q05925 392 aaPredicted RBP16.74■□□□□ 0.27
HERC1-202ENST00000558324 FAM196AQ6ZSG2 479 aa16.74■□□□□ 0.27
HERC1-202ENST00000558324 PUS7Q96PZ0 661 aaKnown RBP16.74■□□□□ 0.27
HERC1-202ENST00000558324 TNS1Q9HBL0 1735 aaKnown RBP16.73■□□□□ 0.27
HERC1-202ENST00000558324 USP54Q70EL1 1684 aa16.73■□□□□ 0.27
HERC1-202ENST00000558324 NINLQ9Y2I6 1382 aa16.73■□□□□ 0.27
HERC1-202ENST00000558324 RGPD5Q99666 1765 aa16.72■□□□□ 0.27
HERC1-202ENST00000558324 LRRC37A3O60309 1634 aa16.72■□□□□ 0.27
HERC1-202ENST00000558324 TMF1P82094 1093 aa16.72■□□□□ 0.27
HERC1-202ENST00000558324 PARP4Q9UKK3 1724 aaKnown RBP16.72■□□□□ 0.27
HERC1-202ENST00000558324 CLSPNQ9HAW4 1339 aa16.71■□□□□ 0.27
HERC1-202ENST00000558324 SLC24A1O60721 1099 aa16.71■□□□□ 0.27
HERC1-202ENST00000558324 OVOS2A0A0J9YW53 1432 aa16.7■□□□□ 0.26
HERC1-202ENST00000558324 OVOS2Q6IE36 1432 aa16.7■□□□□ 0.26
HERC1-202ENST00000558324 CCER1Q8TC90 406 aaPredicted RBP16.7■□□□□ 0.26
HERC1-202ENST00000558324 ABCC6O95255 1503 aa16.7■□□□□ 0.26
HERC1-202ENST00000558324 WNK3Q9BYP7 1800 aa16.69■□□□□ 0.26
HERC1-202ENST00000558324 DDB1Q16531 1140 aa16.69■□□□□ 0.26
HERC1-202ENST00000558324 TIMELESSQ9UNS1 1208 aa16.69■□□□□ 0.26
HERC1-202ENST00000558324 LTN1O94822 1766 aa16.69■□□□□ 0.26
HERC1-202ENST00000558324 ANKRD36BQ8N2N9 1353 aa16.68■□□□□ 0.26
HERC1-202ENST00000558324 PSDA5PKW4 1024 aaPredicted RBP16.68■□□□□ 0.26
HERC1-202ENST00000558324 APBA3O96018 575 aa16.68■□□□□ 0.26
HERC1-202ENST00000558324 EZH2Q15910 746 aaKnown RBP16.68■□□□□ 0.26
HERC1-202ENST00000558324 DISP2A7MBM2 1401 aa16.68■□□□□ 0.26
HERC1-202ENST00000558324 CARD10Q9BWT7 1032 aa16.67■□□□□ 0.26
HERC1-202ENST00000558324 OVOS2A0A0G2JMS6 1433 aa16.67■□□□□ 0.26
HERC1-202ENST00000558324 COG3Q96JB2 828 aa16.66■□□□□ 0.26
HERC1-202ENST00000558324 NLRP2Q9NX02 1062 aa16.66■□□□□ 0.26
HERC1-202ENST00000558324 ERBB3P21860 1342 aa16.66■□□□□ 0.26
HERC1-202ENST00000558324 CCDC7Q96M83 1385 aa16.65■□□□□ 0.26
HERC1-202ENST00000558324 ANKRD24Q8TF21 1146 aa16.65■□□□□ 0.26
HERC1-202ENST00000558324 CDCA8Q53HL2 280 aa16.64■□□□□ 0.25
HERC1-202ENST00000558324 CDCA7Q9BWT1 371 aaPredicted RBP16.64■□□□□ 0.25
HERC1-202ENST00000558324 PEAK1Q9H792 1746 aa16.64■□□□□ 0.25
HERC1-202ENST00000558324 FBLN1P23142 703 aa16.63■□□□□ 0.25
HERC1-202ENST00000558324 LTV1Q96GA3 475 aaPredicted RBP16.63■□□□□ 0.25
HERC1-202ENST00000558324 CAMKK2Q96RR4 588 aa16.63■□□□□ 0.25
HERC1-202ENST00000558324 GGNBP2Q9H3C7 697 aa16.63■□□□□ 0.25
HERC1-202ENST00000558324 R3HDM1Q15032 1099 aaKnown RBP16.62■□□□□ 0.25
HERC1-202ENST00000558324 MARCH10Q8NA82 808 aaPredicted RBP16.62■□□□□ 0.25
HERC1-202ENST00000558324 POLR3GLQ9BT43 218 aa16.61■□□□□ 0.25
HERC1-202ENST00000558324 MYOM1P52179 1685 aa16.61■□□□□ 0.25
HERC1-202ENST00000558324 MAP3K19Q56UN5 1328 aa16.61■□□□□ 0.25
HERC1-202ENST00000558324 TNS2Q63HR2 1409 aa16.61■□□□□ 0.25
HERC1-202ENST00000558324 C11orf95C9JLR9 678 aaPredicted RBP16.6■□□□□ 0.25
HERC1-202ENST00000558324 EXOC5O00471 708 aa16.6■□□□□ 0.25
HERC1-202ENST00000558324 IP6K1Q92551 441 aa16.6■□□□□ 0.25
HERC1-202ENST00000558324 PARD3Q8TEW0 1356 aa16.6■□□□□ 0.25
HERC1-202ENST00000558324 SRCAPQ6ZRS2 3230 aa16.59■□□□□ 0.25
HERC1-202ENST00000558324 FYB1O15117 783 aa16.59■□□□□ 0.25
HERC1-202ENST00000558324 AMPHP49418 695 aa16.59■□□□□ 0.25
HERC1-202ENST00000558324 PTF1AQ7RTS3 328 aa16.59■□□□□ 0.25
HERC1-202ENST00000558324 IL2RBP14784 551 aa16.58■□□□□ 0.24
HERC1-202ENST00000558324 HOXC9P31274 260 aa16.58■□□□□ 0.24
HERC1-202ENST00000558324 RRS1Q15050 365 aaKnown RBP16.58■□□□□ 0.24
HERC1-202ENST00000558324 NSD3Q9BZ95 1437 aa16.58■□□□□ 0.24
HERC1-202ENST00000558324 RREB1Q92766 1687 aa16.58■□□□□ 0.24
HERC1-202ENST00000558324 KIF20BQ96Q89 1820 aa16.58■□□□□ 0.24
HERC1-202ENST00000558324 NUP188Q5SRE5 1749 aa16.57■□□□□ 0.24
HERC1-202ENST00000558324 SBF2Q86WG5 1849 aa16.56■□□□□ 0.24
HERC1-202ENST00000558324 CARD14Q9BXL6 1004 aa16.56■□□□□ 0.24
HERC1-202ENST00000558324 BCL11BQ9C0K0 894 aaPredicted RBP16.56■□□□□ 0.24
HERC1-202ENST00000558324 HSPA5P11021 654 aaKnown RBP16.55■□□□□ 0.24
HERC1-202ENST00000558324 EIF4G2P78344 907 aaKnown RBP eCLIP16.55■□□□□ 0.24
HERC1-202ENST00000558324 FAM208AQ9UK61 1670 aaKnown RBP16.55■□□□□ 0.24
HERC1-202ENST00000558324 BCL9O00512 1426 aa16.54■□□□□ 0.24
HERC1-202ENST00000558324 LRP5O75197 1615 aa16.54■□□□□ 0.24
HERC1-202ENST00000558324 RTL1A6NKG5 1358 aa16.53■□□□□ 0.24
HERC1-202ENST00000558324 ACSBG1Q96GR2 724 aa16.53■□□□□ 0.24
HERC1-202ENST00000558324 KCNQ2O43526 872 aa16.52■□□□□ 0.24
HERC1-202ENST00000558324 NBPF14Q5TI25 921 aa16.52■□□□□ 0.24
HERC1-202ENST00000558324 PLSCR1O15162 318 aa16.51■□□□□ 0.23
HERC1-202ENST00000558324 SMG6Q86US8 1419 aaKnown RBP16.51■□□□□ 0.23
HERC1-202ENST00000558324 RGPD3A6NKT7 1758 aaPredicted RBP16.51■□□□□ 0.23
HERC1-202ENST00000558324 RGPD4Q7Z3J3 1758 aa16.51■□□□□ 0.23
HERC1-202ENST00000558324 NHSQ6T4R5 1651 aa16.5■□□□□ 0.23
HERC1-202ENST00000558324 USHBP1Q8N6Y0 703 aa16.5■□□□□ 0.23
HERC1-202ENST00000558324 DDX54Q8TDD1 881 aaKnown RBP16.5■□□□□ 0.23
HERC1-202ENST00000558324 RGPD2P0DJD1 1756 aa16.5■□□□□ 0.23
HERC1-202ENST00000558324 HSP90AB2PQ58FF8 381 aa16.49■□□□□ 0.23
HERC1-202ENST00000558324 MEGF6O75095 1541 aa16.49■□□□□ 0.23
HERC1-202ENST00000558324 FLT4P35916 1363 aa16.49■□□□□ 0.23
HERC1-202ENST00000558324 CGNL1Q0VF96 1302 aa16.48■□□□□ 0.23
HERC1-202ENST00000558324 NBPF6Q5VWK0 638 aa16.48■□□□□ 0.23
HERC1-202ENST00000558324 NBPF4Q96M43 638 aa16.48■□□□□ 0.23
HERC1-202ENST00000558324 EMILIN1Q9Y6C2 1016 aa16.48■□□□□ 0.23
HERC1-202ENST00000558324 PPM1GO15355 546 aaPredicted RBP16.47■□□□□ 0.23
HERC1-202ENST00000558324 ANO8Q9HCE9 1232 aaPredicted RBP16.47■□□□□ 0.23
HERC1-202ENST00000558324 INSRP06213 1382 aa16.47■□□□□ 0.23
HERC1-202ENST00000558324 TXNRD1Q16881 649 aa16.46■□□□□ 0.23
HERC1-202ENST00000558324 PROM2Q8N271 834 aa16.46■□□□□ 0.23
HERC1-202ENST00000558324 TNNT2P45379 298 aaPredicted RBP16.45■□□□□ 0.22
HERC1-202ENST00000558324 KIF24Q5T7B8 1368 aa16.44■□□□□ 0.22
HERC1-202ENST00000558324 ZCRB1Q8TBF4 217 aaKnown RBP16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms