RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 TSPOAP1O95153 1857 aa16.23■□□□□ 0.19
LDLR-207ENST00000558013 MAP2P11137 1827 aaKnown RBP16.23■□□□□ 0.19
LDLR-207ENST00000558013 TWISTNBQ3B726 338 aaPredicted RBP16.22■□□□□ 0.19
LDLR-207ENST00000558013 CPS1P31327 1500 aa16.21■□□□□ 0.18
LDLR-207ENST00000558013 ZNF853P0CG23 659 aa16.21■□□□□ 0.18
LDLR-207ENST00000558013 COG3Q96JB2 828 aa16.21■□□□□ 0.18
LDLR-207ENST00000558013 KIF20BQ96Q89 1820 aa16.2■□□□□ 0.18
LDLR-207ENST00000558013 PRR36Q9H6K5 1346 aa16.2■□□□□ 0.18
LDLR-207ENST00000558013 GNAI1P63096 354 aa16.2■□□□□ 0.18
LDLR-207ENST00000558013 CPSF1Q10570 1443 aaKnown RBP16.2■□□□□ 0.18
LDLR-207ENST00000558013 IFT57Q9NWB7 429 aa16.19■□□□□ 0.18
LDLR-207ENST00000558013 CCDC61Q9Y6R9 512 aa16.19■□□□□ 0.18
LDLR-207ENST00000558013 RBM42Q9BTD8 480 aaKnown RBP16.18■□□□□ 0.18
LDLR-207ENST00000558013 FOXD4L1Q9NU39 408 aa16.18■□□□□ 0.18
LDLR-207ENST00000558013 ATP7BP35670 1465 aa16.18■□□□□ 0.18
LDLR-207ENST00000558013 CD2BP2O95400 341 aaKnown RBP16.18■□□□□ 0.18
LDLR-207ENST00000558013 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.18■□□□□ 0.18
LDLR-207ENST00000558013 MCM10Q7L590 875 aa16.17■□□□□ 0.18
LDLR-207ENST00000558013 CFAP44Q96MT7 982 aa16.17■□□□□ 0.18
LDLR-207ENST00000558013 EDC4Q6P2E9 1401 aaKnown RBP16.17■□□□□ 0.18
LDLR-207ENST00000558013 SULT6B1Q6IMI4 303 aa16.17■□□□□ 0.18
LDLR-207ENST00000558013 MCM4P33991 863 aa16.17■□□□□ 0.18
LDLR-207ENST00000558013 BRPF1P55201 1214 aaPredicted RBP16.17■□□□□ 0.18
LDLR-207ENST00000558013 CDC42BPGQ6DT37 1551 aa16.16■□□□□ 0.18
LDLR-207ENST00000558013 MIS18AQ9NYP9 233 aa16.16■□□□□ 0.18
LDLR-207ENST00000558013 C16orf71Q8IYS4 520 aaPredicted RBP16.16■□□□□ 0.18
LDLR-207ENST00000558013 KIF2CQ99661 725 aa16.16■□□□□ 0.18
LDLR-207ENST00000558013 HSP90AB2PQ58FF8 381 aa16.15■□□□□ 0.18
LDLR-207ENST00000558013 TBC1D9Q6ZT07 1266 aa16.15■□□□□ 0.18
LDLR-207ENST00000558013 HSCBQ8IWL3 235 aa16.15■□□□□ 0.18
LDLR-207ENST00000558013 ABCC4O15439 1325 aa16.15■□□□□ 0.18
LDLR-207ENST00000558013 RIMBP3CA6NJZ7 1639 aa16.15■□□□□ 0.18
LDLR-207ENST00000558013 RIMBP3BA6NNM3 1639 aa16.15■□□□□ 0.18
LDLR-207ENST00000558013 RIMBP3Q9UFD9 1639 aa16.15■□□□□ 0.18
LDLR-207ENST00000558013 APBB1O00213 710 aa16.14■□□□□ 0.18
LDLR-207ENST00000558013 EIF4A2Q14240 407 aaKnown RBP16.14■□□□□ 0.18
LDLR-207ENST00000558013 ZNF692Q9BU19 519 aaPredicted RBP16.14■□□□□ 0.18
LDLR-207ENST00000558013 BMP2KLQ5H9B9 411 aa16.14■□□□□ 0.17
LDLR-207ENST00000558013 RBM25P49756 843 aaKnown RBP16.14■□□□□ 0.17
LDLR-207ENST00000558013 PLPPR3Q6T4P5 718 aa16.14■□□□□ 0.17
LDLR-207ENST00000558013 ARHGAP45Q92619 1136 aa16.14■□□□□ 0.17
LDLR-207ENST00000558013 CHMP5Q9NZZ3 219 aa16.14■□□□□ 0.17
LDLR-207ENST00000558013 ZNF428Q96B54 188 aa16.13■□□□□ 0.17
LDLR-207ENST00000558013 CALD1Q05682 793 aaKnown RBP16.13■□□□□ 0.17
LDLR-207ENST00000558013 OTUD7AQ8TE49 926 aaPredicted RBP16.13■□□□□ 0.17
LDLR-207ENST00000558013 PTCH1Q13635 1447 aa16.13■□□□□ 0.17
LDLR-207ENST00000558013 DLC1Q96QB1 1528 aa16.13■□□□□ 0.17
LDLR-207ENST00000558013 SETD1AO15047 1707 aaKnown RBP16.13■□□□□ 0.17
LDLR-207ENST00000558013 ROBO2Q9HCK4 1378 aa16.12■□□□□ 0.17
LDLR-207ENST00000558013 ESF1Q9H501 851 aaKnown RBP16.12■□□□□ 0.17
LDLR-207ENST00000558013 GCC1Q96CN9 775 aa16.12■□□□□ 0.17
LDLR-207ENST00000558013 NRXN3Q9Y4C0 1643 aa16.12■□□□□ 0.17
LDLR-207ENST00000558013 FOXO3O43524 673 aa16.12■□□□□ 0.17
LDLR-207ENST00000558013 GSPT1P15170 499 aaKnown RBP16.12■□□□□ 0.17
LDLR-207ENST00000558013 CDK12Q9NYV4 1490 aaPredicted RBP16.11■□□□□ 0.17
LDLR-207ENST00000558013 PIK3R4Q99570 1358 aa16.11■□□□□ 0.17
LDLR-207ENST00000558013 PANK2Q9BZ23 570 aa16.11■□□□□ 0.17
LDLR-207ENST00000558013 SPATA31D1Q6ZQQ2 1576 aa16.11■□□□□ 0.17
LDLR-207ENST00000558013 AATKQ6ZMQ8 1374 aa16.11■□□□□ 0.17
LDLR-207ENST00000558013 ACEP12821 1306 aa16.1■□□□□ 0.17
LDLR-207ENST00000558013 SLC26A8Q96RN1 970 aa16.1■□□□□ 0.17
LDLR-207ENST00000558013 SMARCA5O60264 1052 aaPredicted RBP16.1■□□□□ 0.17
LDLR-207ENST00000558013 TRAK2O60296 914 aa16.1■□□□□ 0.17
LDLR-207ENST00000558013 DLG5Q8TDM6 1919 aa16.09■□□□□ 0.17
LDLR-207ENST00000558013 DIP2BQ9P265 1576 aa16.09■□□□□ 0.17
LDLR-207ENST00000558013 XRCC6P12956 609 aaKnown RBP eCLIP16.09■□□□□ 0.17
LDLR-207ENST00000558013 PPP6R1Q9UPN7 881 aa16.09■□□□□ 0.17
LDLR-207ENST00000558013 TTC21BQ7Z4L5 1316 aa16.09■□□□□ 0.17
LDLR-207ENST00000558013 LTKP29376 864 aa16.08■□□□□ 0.17
LDLR-207ENST00000558013 HSP90AB1P08238 724 aaKnown RBP16.08■□□□□ 0.16
LDLR-207ENST00000558013 DDIT3P35638 169 aa16.08■□□□□ 0.16
LDLR-207ENST00000558013 CEBPAP49715 358 aaPredicted RBP16.08■□□□□ 0.16
LDLR-207ENST00000558013 LMOD3Q0VAK6 560 aa16.08■□□□□ 0.16
LDLR-207ENST00000558013 PLEKHM2Q8IWE5 1019 aa16.08■□□□□ 0.16
LDLR-207ENST00000558013 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.08■□□□□ 0.16
LDLR-207ENST00000558013 API5Q9BZZ5 524 aaKnown RBP16.08■□□□□ 0.16
LDLR-207ENST00000558013 TNPO1Q92973 898 aaKnown RBP16.07■□□□□ 0.16
LDLR-207ENST00000558013 MEIS3Q99687 375 aa16.07■□□□□ 0.16
LDLR-207ENST00000558013 AGLP35573 1532 aa16.06■□□□□ 0.16
LDLR-207ENST00000558013 F6X3S4 739 aa16.05■□□□□ 0.16
LDLR-207ENST00000558013 CHL1O00533 1208 aa16.05■□□□□ 0.16
LDLR-207ENST00000558013 G2E3Q7L622 706 aa16.05■□□□□ 0.16
LDLR-207ENST00000558013 SNX21Q969T3 373 aa16.05■□□□□ 0.16
LDLR-207ENST00000558013 DCTPP1Q9H773 170 aa16.05■□□□□ 0.16
LDLR-207ENST00000558013 KNDC1Q76NI1 1749 aa16.05■□□□□ 0.16
LDLR-207ENST00000558013 SLC4A2P04920 1241 aa16.05■□□□□ 0.16
LDLR-207ENST00000558013 HSP90AA1P07900 732 aaKnown RBP16.05■□□□□ 0.16
LDLR-207ENST00000558013 GAS2L2Q8NHY3 880 aa16.04■□□□□ 0.16
LDLR-207ENST00000558013 RGS12O14924 1447 aa16.04■□□□□ 0.16
LDLR-207ENST00000558013 GOLGA6L3A6NEY3 463 aa16.03■□□□□ 0.16
LDLR-207ENST00000558013 INTS3Q68E01 1043 aaKnown RBP16.03■□□□□ 0.16
LDLR-207ENST00000558013 SLC4A10Q6U841 1118 aa16.03■□□□□ 0.16
LDLR-207ENST00000558013 NCOA3Q9Y6Q9 1424 aa16.03■□□□□ 0.16
LDLR-207ENST00000558013 CEP85Q6P2H3 762 aa16.03■□□□□ 0.16
LDLR-207ENST00000558013 CHMP4BQ9H444 224 aaKnown RBP16.03■□□□□ 0.16
LDLR-207ENST00000558013 MSH6P52701 1360 aa16.03■□□□□ 0.16
LDLR-207ENST00000558013 PRKCSHP14314 528 aaPredicted RBP16.03■□□□□ 0.16
LDLR-207ENST00000558013 RRAGDQ9NQL2 400 aaPredicted RBP16.03■□□□□ 0.16
LDLR-207ENST00000558013 MAP3K19Q56UN5 1328 aa16.03■□□□□ 0.16
LDLR-207ENST00000558013 FSD2A1L4K1 749 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms