RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 PROM2Q8N271 834 aa18.23■□□□□ 0.51
SHMT2-223ENST00000556689 PARP4Q9UKK3 1724 aaKnown RBP18.23■□□□□ 0.51
SHMT2-223ENST00000556689 CARD10Q9BWT7 1032 aa18.22■□□□□ 0.51
SHMT2-223ENST00000556689 ANO8Q9HCE9 1232 aaPredicted RBP18.22■□□□□ 0.51
SHMT2-223ENST00000556689 EXOC5O00471 708 aa18.21■□□□□ 0.51
SHMT2-223ENST00000556689 CSB-PGBD3P0DP91 1061 aa18.21■□□□□ 0.51
SHMT2-223ENST00000556689 TTC21BQ7Z4L5 1316 aa18.21■□□□□ 0.51
SHMT2-223ENST00000556689 SLIT3O75094 1523 aa18.2■□□□□ 0.5
SHMT2-223ENST00000556689 BCL9O00512 1426 aa18.19■□□□□ 0.5
SHMT2-223ENST00000556689 SOX12O15370 315 aa18.19■□□□□ 0.5
SHMT2-223ENST00000556689 ZBTB7AO95365 584 aa18.19■□□□□ 0.5
SHMT2-223ENST00000556689 L3MBTL2Q969R5 705 aa18.19■□□□□ 0.5
SHMT2-223ENST00000556689 PDGFDQ9GZP0 370 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-223ENST00000556689 TXNRD1Q16881 649 aa18.18■□□□□ 0.5
SHMT2-223ENST00000556689 PEAK1Q9H792 1746 aa18.18■□□□□ 0.5
SHMT2-223ENST00000556689 STK32BQ9NY57 414 aa18.17■□□□□ 0.5
SHMT2-223ENST00000556689 ATF5Q9Y2D1 282 aaPredicted RBP18.17■□□□□ 0.5
SHMT2-223ENST00000556689 TTC21AQ8NDW8 1320 aa18.17■□□□□ 0.5
SHMT2-223ENST00000556689 CPSF1Q10570 1443 aaKnown RBP18.16■□□□□ 0.5
SHMT2-223ENST00000556689 PTGER2P43116 358 aa18.15■□□□□ 0.5
SHMT2-223ENST00000556689 SLC15A2Q16348 729 aa18.15■□□□□ 0.5
SHMT2-223ENST00000556689 LRRC37A3O60309 1634 aa18.14■□□□□ 0.49
SHMT2-223ENST00000556689 COL18A1P39060 1754 aa18.14■□□□□ 0.49
SHMT2-223ENST00000556689 QRICH2Q9H0J4 1663 aa18.13■□□□□ 0.49
SHMT2-223ENST00000556689 CCDC7Q96M83 1385 aa18.13■□□□□ 0.49
SHMT2-223ENST00000556689 RGPD3A6NKT7 1758 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-223ENST00000556689 RGPD4Q7Z3J3 1758 aa18.12■□□□□ 0.49
SHMT2-223ENST00000556689 SBF2Q86WG5 1849 aa18.12■□□□□ 0.49
SHMT2-223ENST00000556689 PIK3C2AO00443 1686 aa18.12■□□□□ 0.49
SHMT2-223ENST00000556689 MTFR1LQ9H019 292 aa18.11■□□□□ 0.49
SHMT2-223ENST00000556689 KTN1Q86UP2 1357 aaKnown RBP18.11■□□□□ 0.49
SHMT2-223ENST00000556689 ROCK2O75116 1388 aaKnown RBP18.1■□□□□ 0.49
SHMT2-223ENST00000556689 SIN3AQ96ST3 1273 aa18.1■□□□□ 0.49
SHMT2-223ENST00000556689 SYT17Q9BSW7 474 aa18.1■□□□□ 0.49
SHMT2-223ENST00000556689 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.09■□□□□ 0.49
SHMT2-223ENST00000556689 ACSBG1Q96GR2 724 aa18.09■□□□□ 0.49
SHMT2-223ENST00000556689 FHDC1Q9C0D6 1143 aaPredicted RBP18.09■□□□□ 0.49
SHMT2-223ENST00000556689 NLRP2Q9NX02 1062 aa18.09■□□□□ 0.49
SHMT2-223ENST00000556689 NEUROD1Q13562 356 aa18.08■□□□□ 0.48
SHMT2-223ENST00000556689 CASZ1Q86V15 1759 aa18.07■□□□□ 0.48
SHMT2-223ENST00000556689 IL2RBP14784 551 aa18.07■□□□□ 0.48
SHMT2-223ENST00000556689 TRPM1Q7Z4N2 1603 aa18.06■□□□□ 0.48
SHMT2-223ENST00000556689 ZNF784Q8NCA9 323 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-223ENST00000556689 SGIP1Q9BQI5 828 aa18.06■□□□□ 0.48
SHMT2-223ENST00000556689 TNS2Q63HR2 1409 aa18.06■□□□□ 0.48
SHMT2-223ENST00000556689 ERBB3P21860 1342 aa18.05■□□□□ 0.48
SHMT2-223ENST00000556689 ARXQ96QS3 562 aa18.05■□□□□ 0.48
SHMT2-223ENST00000556689 USP31Q70CQ4 1352 aa18.04■□□□□ 0.48
SHMT2-223ENST00000556689 NFAT5O94916 1531 aa18.04■□□□□ 0.48
SHMT2-223ENST00000556689 NME9Q86XW9 330 aa18.04■□□□□ 0.48
SHMT2-223ENST00000556689 UTRNP46939 3433 aa18.04■□□□□ 0.48
SHMT2-223ENST00000556689 TMC1Q8TDI8 760 aa18.03■□□□□ 0.48
SHMT2-223ENST00000556689 ANKRD24Q8TF21 1146 aa18.03■□□□□ 0.48
SHMT2-223ENST00000556689 AKAP12Q02952 1782 aa18.03■□□□□ 0.48
SHMT2-223ENST00000556689 RGPD5Q99666 1765 aa18.02■□□□□ 0.48
SHMT2-223ENST00000556689 HDGFL2Q7Z4V5 671 aaPredicted RBP18.02■□□□□ 0.48
SHMT2-223ENST00000556689 WNK3Q9BYP7 1800 aa18.01■□□□□ 0.47
SHMT2-223ENST00000556689 ABCC6O95255 1503 aa18.01■□□□□ 0.47
SHMT2-223ENST00000556689 MYOM1P52179 1685 aa18■□□□□ 0.47
SHMT2-223ENST00000556689 SLC12A5Q9H2X9 1139 aa18■□□□□ 0.47
SHMT2-223ENST00000556689 LRRC4BQ9NT99 713 aa18■□□□□ 0.47
SHMT2-223ENST00000556689 SBNO2Q9Y2G9 1366 aa17.99■□□□□ 0.47
SHMT2-223ENST00000556689 ZNF827Q17R98 1081 aa17.98■□□□□ 0.47
SHMT2-223ENST00000556689 DDX54Q8TDD1 881 aaKnown RBP17.98■□□□□ 0.47
SHMT2-223ENST00000556689 CARD11Q9BXL7 1154 aa17.98■□□□□ 0.47
SHMT2-223ENST00000556689 TERF2IPQ9NYB0 399 aa17.98■□□□□ 0.47
SHMT2-223ENST00000556689 SLC27A3Q5K4L6 730 aa17.97■□□□□ 0.47
SHMT2-223ENST00000556689 SLC16A10Q8TF71 515 aa17.97■□□□□ 0.47
SHMT2-223ENST00000556689 GPR162Q16538 588 aa17.96■□□□□ 0.47
SHMT2-223ENST00000556689 IP6K1Q92551 441 aa17.96■□□□□ 0.47
SHMT2-223ENST00000556689 AKT1S1Q96B36 256 aa17.96■□□□□ 0.47
SHMT2-223ENST00000556689 MAP3K5Q99683 1374 aa17.95■□□□□ 0.46
SHMT2-223ENST00000556689 NHSQ6T4R5 1651 aa17.95■□□□□ 0.46
SHMT2-223ENST00000556689 CD163L1Q9NR16 1453 aa17.95■□□□□ 0.46
SHMT2-223ENST00000556689 POLD1P28340 1107 aa17.94■□□□□ 0.46
SHMT2-223ENST00000556689 LTV1Q96GA3 475 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-223ENST00000556689 PUS7Q96PZ0 661 aaKnown RBP17.94■□□□□ 0.46
SHMT2-223ENST00000556689 EDC4Q6P2E9 1401 aaKnown RBP17.94■□□□□ 0.46
SHMT2-223ENST00000556689 TFCP2L1Q9NZI6 479 aa17.93■□□□□ 0.46
SHMT2-223ENST00000556689 PRIM1P49642 420 aaKnown RBP17.92■□□□□ 0.46
SHMT2-223ENST00000556689 C1QTNF8P60827 252 aa17.92■□□□□ 0.46
SHMT2-223ENST00000556689 SYTL4Q96C24 671 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-223ENST00000556689 MON2Q7Z3U7 1717 aa17.92■□□□□ 0.46
SHMT2-223ENST00000556689 KLHL34Q8N239 644 aa17.91■□□□□ 0.46
SHMT2-223ENST00000556689 SENP3-EIF4A1A0A087X0R7 540 aa17.9■□□□□ 0.46
SHMT2-223ENST00000556689 KCNQ4P56696 695 aa17.9■□□□□ 0.46
SHMT2-223ENST00000556689 PNPLA7Q6ZV29 1317 aa17.9■□□□□ 0.46
SHMT2-223ENST00000556689 PAPPAQ13219 1627 aa17.9■□□□□ 0.46
SHMT2-223ENST00000556689 ZCRB1Q8TBF4 217 aaKnown RBP17.89■□□□□ 0.45
SHMT2-223ENST00000556689 COG3Q96JB2 828 aa17.89■□□□□ 0.45
SHMT2-223ENST00000556689 A0A1W2PP64 1363 aa17.89■□□□□ 0.45
SHMT2-223ENST00000556689 BTAF1O14981 1849 aa17.88■□□□□ 0.45
SHMT2-223ENST00000556689 AMPHP49418 695 aa17.88■□□□□ 0.45
SHMT2-223ENST00000556689 PELP1Q8IZL8 1130 aaKnown RBP17.88■□□□□ 0.45
SHMT2-223ENST00000556689 KAT6BQ8WYB5 2073 aa17.87■□□□□ 0.45
SHMT2-223ENST00000556689 USP54Q70EL1 1684 aa17.87■□□□□ 0.45
SHMT2-223ENST00000556689 HOXC9P31274 260 aa17.87■□□□□ 0.45
SHMT2-223ENST00000556689 ANKRD36BQ8N2N9 1353 aa17.87■□□□□ 0.45
SHMT2-223ENST00000556689 MAP3K19Q56UN5 1328 aa17.86■□□□□ 0.45
SHMT2-223ENST00000556689 LTN1O94822 1766 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms