RNA–Protein interactions for RNA: ENST00000556380.3

SRP54-210, Transcript of signal recognition particle 54, humanhuman

TSL 3

Gene SRP54, Length 600 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-210ENST00000556380 PLCD3Q8N3E9 789 aa13.45□□□□□ -0.26
SRP54-210ENST00000556380 USP31Q70CQ4 1352 aa13.45□□□□□ -0.26
SRP54-210ENST00000556380 ANKRD36BQ8N2N9 1353 aa13.45□□□□□ -0.26
SRP54-210ENST00000556380 SLIT2O94813 1529 aa13.44□□□□□ -0.26
SRP54-210ENST00000556380 GCP02774 474 aa13.44□□□□□ -0.26
SRP54-210ENST00000556380 HAP1P54257 671 aaPredicted RBP13.44□□□□□ -0.26
SRP54-210ENST00000556380 EDC4Q6P2E9 1401 aaKnown RBP13.44□□□□□ -0.26
SRP54-210ENST00000556380 CRYBG1Q9Y4K1 1723 aa13.44□□□□□ -0.26
SRP54-210ENST00000556380 NRKQ7Z2Y5 1582 aa13.43□□□□□ -0.26
SRP54-210ENST00000556380 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.43□□□□□ -0.26
SRP54-210ENST00000556380 ABCA3Q99758 1704 aa13.43□□□□□ -0.26
SRP54-210ENST00000556380 CARD14Q9BXL6 1004 aa13.43□□□□□ -0.26
SRP54-210ENST00000556380 TSPYL2Q9H2G4 693 aaPredicted RBP13.43□□□□□ -0.26
SRP54-210ENST00000556380 QTRT2Q9H974 415 aaKnown RBP13.43□□□□□ -0.26
SRP54-210ENST00000556380 USP21Q9UK80 565 aa13.43□□□□□ -0.26
SRP54-210ENST00000556380 MON2Q7Z3U7 1717 aa13.42□□□□□ -0.26
SRP54-210ENST00000556380 NME9Q86XW9 330 aa13.42□□□□□ -0.26
SRP54-210ENST00000556380 UNC5CLQ8IV45 518 aa13.42□□□□□ -0.26
SRP54-210ENST00000556380 PIK3C2AO00443 1686 aa13.42□□□□□ -0.26
SRP54-210ENST00000556380 CPDO75976 1380 aa13.42□□□□□ -0.26
SRP54-210ENST00000556380 KIAA0232Q92628 1395 aa13.42□□□□□ -0.26
SRP54-210ENST00000556380 ATRNO75882 1429 aa13.41□□□□□ -0.26
SRP54-210ENST00000556380 SLIT3O75094 1523 aa13.41□□□□□ -0.26
SRP54-210ENST00000556380 ZC3H6P61129 1189 aaKnown RBP13.41□□□□□ -0.26
SRP54-210ENST00000556380 MARF1Q9Y4F3 1742 aaKnown RBP13.41□□□□□ -0.26
SRP54-210ENST00000556380 RXRBP28702 533 aa13.39□□□□□ -0.27
SRP54-210ENST00000556380 CHRNA2Q15822 529 aa13.39□□□□□ -0.27
SRP54-210ENST00000556380 PRDM11Q9NQV5 511 aa13.39□□□□□ -0.27
SRP54-210ENST00000556380 TRPC5Q9UL62 973 aaPredicted RBP13.39□□□□□ -0.27
SRP54-210ENST00000556380 PHRF1Q9P1Y6 1649 aaKnown RBP13.39□□□□□ -0.27
SRP54-210ENST00000556380 KIF7Q2M1P5 1343 aa13.39□□□□□ -0.27
SRP54-210ENST00000556380 FYB1O15117 783 aa13.38□□□□□ -0.27
SRP54-210ENST00000556380 RBM6P78332 1123 aaKnown RBP13.38□□□□□ -0.27
SRP54-210ENST00000556380 LHX8Q68G74 356 aa13.38□□□□□ -0.27
SRP54-210ENST00000556380 ARHGEF25Q86VW2 580 aa13.38□□□□□ -0.27
SRP54-210ENST00000556380 KCNH5Q8NCM2 988 aa13.38□□□□□ -0.27
SRP54-210ENST00000556380 BTG4Q9NY30 223 aa13.38□□□□□ -0.27
SRP54-210ENST00000556380 MYOM1P52179 1685 aa13.37□□□□□ -0.27
SRP54-210ENST00000556380 VPS72Q15906 364 aa13.37□□□□□ -0.27
SRP54-210ENST00000556380 POLR3GLQ9BT43 218 aa13.37□□□□□ -0.27
SRP54-210ENST00000556380 OVOS2A0A0J9YW53 1432 aa13.37□□□□□ -0.27
SRP54-210ENST00000556380 OVOS2Q6IE36 1432 aa13.37□□□□□ -0.27
SRP54-210ENST00000556380 NFAT5O94916 1531 aa13.36□□□□□ -0.27
SRP54-210ENST00000556380 GJD4Q96KN9 370 aaPredicted RBP13.36□□□□□ -0.27
SRP54-210ENST00000556380 PANK3Q9H999 370 aa13.36□□□□□ -0.27
SRP54-210ENST00000556380 COL14A1Q05707 1796 aaKnown RBP13.35□□□□□ -0.27
SRP54-210ENST00000556380 AATKQ6ZMQ8 1374 aa13.35□□□□□ -0.27
SRP54-210ENST00000556380 USP54Q70EL1 1684 aa13.35□□□□□ -0.27
SRP54-210ENST00000556380 CAMTA1Q9Y6Y1 1673 aa13.34□□□□□ -0.27
SRP54-210ENST00000556380 NWD2Q9ULI1 1742 aa13.34□□□□□ -0.27
SRP54-210ENST00000556380 NSD3Q9BZ95 1437 aa13.34□□□□□ -0.27
SRP54-210ENST00000556380 ONECUT3O60422 494 aaPredicted RBP13.34□□□□□ -0.27
SRP54-210ENST00000556380 RASEFQ8IZ41 740 aa13.34□□□□□ -0.27
SRP54-210ENST00000556380 AXIN2Q9Y2T1 843 aa13.34□□□□□ -0.27
SRP54-210ENST00000556380 CDK12Q9NYV4 1490 aaPredicted RBP13.34□□□□□ -0.27
SRP54-210ENST00000556380 WASHC2AQ641Q2 1341 aa13.34□□□□□ -0.27
SRP54-210ENST00000556380 CCDC7Q96M83 1385 aa13.33□□□□□ -0.27
SRP54-210ENST00000556380 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.33□□□□□ -0.27
SRP54-210ENST00000556380 SOX12O15370 315 aa13.33□□□□□ -0.28
SRP54-210ENST00000556380 COG3Q96JB2 828 aa13.33□□□□□ -0.28
SRP54-210ENST00000556380 GGNBP2Q9H3C7 697 aa13.33□□□□□ -0.28
SRP54-210ENST00000556380 PLCH1Q4KWH8 1693 aa13.33□□□□□ -0.28
SRP54-210ENST00000556380 LMO7Q8WWI1 1683 aa13.32□□□□□ -0.28
SRP54-210ENST00000556380 FBLN1P23142 703 aa13.32□□□□□ -0.28
SRP54-210ENST00000556380 MS4A3Q96HJ5 214 aa13.32□□□□□ -0.28
SRP54-210ENST00000556380 NRAPQ86VF7 1730 aa13.32□□□□□ -0.28
SRP54-210ENST00000556380 SPATA31A5Q5VU36 1347 aa13.32□□□□□ -0.28
SRP54-210ENST00000556380 SPATA31A7Q8IWB4 1347 aa13.32□□□□□ -0.28
SRP54-210ENST00000556380 COL18A1P39060 1754 aa13.31□□□□□ -0.28
SRP54-210ENST00000556380 SOCS7O14512 581 aa13.31□□□□□ -0.28
SRP54-210ENST00000556380 PER1O15534 1290 aaPredicted RBP13.31□□□□□ -0.28
SRP54-210ENST00000556380 ZBTB47Q9UFB7 747 aaPredicted RBP13.31□□□□□ -0.28
SRP54-210ENST00000556380 RGS12O14924 1447 aa13.3□□□□□ -0.28
SRP54-210ENST00000556380 GLI3P10071 1580 aa13.3□□□□□ -0.28
SRP54-210ENST00000556380 ZEB1P37275 1124 aaPredicted RBP13.3□□□□□ -0.28
SRP54-210ENST00000556380 LARP1Q6PKG0 1096 aaKnown RBP13.3□□□□□ -0.28
SRP54-210ENST00000556380 FBXO3Q9UK99 471 aa13.3□□□□□ -0.28
SRP54-210ENST00000556380 CGNL1Q0VF96 1302 aa13.3□□□□□ -0.28
SRP54-210ENST00000556380 SPATA31A1Q5TZJ5 1347 aa13.3□□□□□ -0.28
SRP54-210ENST00000556380 COL5A2P05997 1499 aaPredicted RBP13.29□□□□□ -0.28
SRP54-210ENST00000556380 ZBTB7CA1YPR0 619 aa13.29□□□□□ -0.28
SRP54-210ENST00000556380 EVA1CP58658 441 aa13.29□□□□□ -0.28
SRP54-210ENST00000556380 STRN4Q9NRL3 753 aa13.29□□□□□ -0.28
SRP54-210ENST00000556380 AMER1Q5JTC6 1135 aaPredicted RBP13.28□□□□□ -0.28
SRP54-210ENST00000556380 IP6K1Q92551 441 aa13.28□□□□□ -0.28
SRP54-210ENST00000556380 MAP3K19Q56UN5 1328 aa13.28□□□□□ -0.28
SRP54-210ENST00000556380 KIF12Q96FN5 646 aa13.27□□□□□ -0.29
SRP54-210ENST00000556380 CCDC9Q9Y3X0 531 aaKnown RBP13.27□□□□□ -0.29
SRP54-210ENST00000556380 ABCC6O95255 1503 aa13.27□□□□□ -0.29
SRP54-210ENST00000556380 RRS1Q15050 365 aaKnown RBP13.26□□□□□ -0.29
SRP54-210ENST00000556380 FAM98CQ17RN3 349 aaKnown RBP13.26□□□□□ -0.29
SRP54-210ENST00000556380 SEPT12Q8IYM1 358 aa13.26□□□□□ -0.29
SRP54-210ENST00000556380 WDR17Q8IZU2 1322 aa13.26□□□□□ -0.29
SRP54-210ENST00000556380 KNSTRNQ9Y448 316 aa13.26□□□□□ -0.29
SRP54-210ENST00000556380 NUBP1P53384 320 aa13.25□□□□□ -0.29
SRP54-210ENST00000556380 BARGINQ6ZT62 677 aa13.25□□□□□ -0.29
SRP54-210ENST00000556380 TCP11L2Q8N4U5 519 aa13.25□□□□□ -0.29
SRP54-210ENST00000556380 CRB1P82279 1406 aa13.24□□□□□ -0.29
SRP54-210ENST00000556380 NSD2O96028 1365 aa13.24□□□□□ -0.29
SRP54-210ENST00000556380 ERBB3P21860 1342 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms