RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 RGPD5Q99666 1765 aa19.09■□□□□ 0.65
SHMT2-219ENST00000555563 LARP1Q6PKG0 1096 aaKnown RBP19.09■□□□□ 0.65
SHMT2-219ENST00000555563 A0A0G2JS52 829 aa19.08■□□□□ 0.64
SHMT2-219ENST00000555563 MYT1Q01538 1121 aa19.08■□□□□ 0.64
SHMT2-219ENST00000555563 POLR3GLQ9BT43 218 aa19.07■□□□□ 0.64
SHMT2-219ENST00000555563 AXIN2Q9Y2T1 843 aa19.07■□□□□ 0.64
SHMT2-219ENST00000555563 CRB1P82279 1406 aa19.07■□□□□ 0.64
SHMT2-219ENST00000555563 NSD3Q9BZ95 1437 aa19.07■□□□□ 0.64
SHMT2-219ENST00000555563 USP35Q9P2H5 1018 aa19.06■□□□□ 0.64
SHMT2-219ENST00000555563 SRCAPQ6ZRS2 3230 aa19.05■□□□□ 0.64
SHMT2-219ENST00000555563 COG3Q96JB2 828 aa19.05■□□□□ 0.64
SHMT2-219ENST00000555563 CARD14Q9BXL6 1004 aa19.05■□□□□ 0.64
SHMT2-219ENST00000555563 WNK3Q9BYP7 1800 aa19.04■□□□□ 0.64
SHMT2-219ENST00000555563 FYB1O15117 783 aa19.03■□□□□ 0.64
SHMT2-219ENST00000555563 CCDC125Q86Z20 511 aa19.03■□□□□ 0.64
SHMT2-219ENST00000555563 WDR17Q8IZU2 1322 aa19.02■□□□□ 0.64
SHMT2-219ENST00000555563 C11orf95C9JLR9 678 aaPredicted RBP19.02■□□□□ 0.64
SHMT2-219ENST00000555563 BARGINQ6ZT62 677 aa19.02■□□□□ 0.64
SHMT2-219ENST00000555563 KRT27Q7Z3Y8 459 aa19.02■□□□□ 0.64
SHMT2-219ENST00000555563 TCP11L2Q8N4U5 519 aa19.02■□□□□ 0.64
SHMT2-219ENST00000555563 GGNBP2Q9H3C7 697 aa19.02■□□□□ 0.64
SHMT2-219ENST00000555563 PARP4Q9UKK3 1724 aaKnown RBP19.01■□□□□ 0.63
SHMT2-219ENST00000555563 TOM1L2Q6ZVM7 507 aa19■□□□□ 0.63
SHMT2-219ENST00000555563 LRRC37A3O60309 1634 aa19■□□□□ 0.63
SHMT2-219ENST00000555563 THRAP3Q9Y2W1 955 aaKnown RBP18.99■□□□□ 0.63
SHMT2-219ENST00000555563 BLMP54132 1417 aaPredicted RBP18.99■□□□□ 0.63
SHMT2-219ENST00000555563 ERBB3P21860 1342 aa18.99■□□□□ 0.63
SHMT2-219ENST00000555563 MAP3K19Q56UN5 1328 aa18.99■□□□□ 0.63
SHMT2-219ENST00000555563 CSB-PGBD3P0DP91 1061 aa18.98■□□□□ 0.63
SHMT2-219ENST00000555563 KIF7Q2M1P5 1343 aa18.98■□□□□ 0.63
SHMT2-219ENST00000555563 ANKRD26Q9UPS8 1709 aa18.97■□□□□ 0.63
SHMT2-219ENST00000555563 FBLN1P23142 703 aa18.97■□□□□ 0.63
SHMT2-219ENST00000555563 CGNL1Q0VF96 1302 aa18.97■□□□□ 0.63
SHMT2-219ENST00000555563 FAM208AQ9UK61 1670 aaKnown RBP18.96■□□□□ 0.63
SHMT2-219ENST00000555563 RTL1A6NKG5 1358 aa18.95■□□□□ 0.62
SHMT2-219ENST00000555563 PEAK1Q9H792 1746 aa18.95■□□□□ 0.62
SHMT2-219ENST00000555563 EP400Q96L91 3159 aa18.95■□□□□ 0.62
SHMT2-219ENST00000555563 FAM182BQ5T319 152 aa18.95■□□□□ 0.62
SHMT2-219ENST00000555563 CARD10Q9BWT7 1032 aa18.95■□□□□ 0.62
SHMT2-219ENST00000555563 CCDC7Q96M83 1385 aa18.94■□□□□ 0.62
SHMT2-219ENST00000555563 DISP2A7MBM2 1401 aa18.94■□□□□ 0.62
SHMT2-219ENST00000555563 RRS1Q15050 365 aaKnown RBP18.94■□□□□ 0.62
SHMT2-219ENST00000555563 ANKRD24Q8TF21 1146 aa18.94■□□□□ 0.62
SHMT2-219ENST00000555563 IP6K1Q92551 441 aa18.94■□□□□ 0.62
SHMT2-219ENST00000555563 PANK3Q9H999 370 aa18.94■□□□□ 0.62
SHMT2-219ENST00000555563 RGPD1P0DJD0 1748 aa18.92■□□□□ 0.62
SHMT2-219ENST00000555563 HOXC9P31274 260 aa18.92■□□□□ 0.62
SHMT2-219ENST00000555563 AMPHP49418 695 aa18.92■□□□□ 0.62
SHMT2-219ENST00000555563 NLRP2Q9NX02 1062 aa18.91■□□□□ 0.62
SHMT2-219ENST00000555563 TNS1Q9HBL0 1735 aaKnown RBP18.91■□□□□ 0.62
SHMT2-219ENST00000555563 PDE3BQ13370 1112 aa18.9■□□□□ 0.62
SHMT2-219ENST00000555563 LTV1Q96GA3 475 aaPredicted RBP18.9■□□□□ 0.62
SHMT2-219ENST00000555563 RGPD2P0DJD1 1756 aa18.88■□□□□ 0.61
SHMT2-219ENST00000555563 CDCA7Q9BWT1 371 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-219ENST00000555563 NSD2O96028 1365 aa18.88■□□□□ 0.61
SHMT2-219ENST00000555563 FLT4P35916 1363 aa18.88■□□□□ 0.61
SHMT2-219ENST00000555563 TNS2Q63HR2 1409 aa18.88■□□□□ 0.61
SHMT2-219ENST00000555563 DDB1Q16531 1140 aa18.87■□□□□ 0.61
SHMT2-219ENST00000555563 KIF24Q5T7B8 1368 aa18.87■□□□□ 0.61
SHMT2-219ENST00000555563 WASHC2AQ641Q2 1341 aa18.87■□□□□ 0.61
SHMT2-219ENST00000555563 OVOS2A0A0G2JMS6 1433 aa18.86■□□□□ 0.61
SHMT2-219ENST00000555563 SMG6Q86US8 1419 aaKnown RBP18.86■□□□□ 0.61
SHMT2-219ENST00000555563 INSRP06213 1382 aa18.86■□□□□ 0.61
SHMT2-219ENST00000555563 SF3B2Q13435 895 aaKnown RBP18.86■□□□□ 0.61
SHMT2-219ENST00000555563 FAM196AQ6ZSG2 479 aa18.86■□□□□ 0.61
SHMT2-219ENST00000555563 EMILIN1Q9Y6C2 1016 aa18.86■□□□□ 0.61
SHMT2-219ENST00000555563 MAP2P11137 1827 aaKnown RBP18.85■□□□□ 0.61
SHMT2-219ENST00000555563 HSP90AB2PQ58FF8 381 aa18.84■□□□□ 0.61
SHMT2-219ENST00000555563 DEFB132Q7Z7B7 95 aa18.84■□□□□ 0.61
SHMT2-219ENST00000555563 IL2RBP14784 551 aa18.83■□□□□ 0.6
SHMT2-219ENST00000555563 TNNT2P45379 298 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-219ENST00000555563 KNSTRNQ9Y448 316 aa18.83■□□□□ 0.6
SHMT2-219ENST00000555563 TRIM37O94972 964 aa18.82■□□□□ 0.6
SHMT2-219ENST00000555563 SBF2Q86WG5 1849 aa18.81■□□□□ 0.6
SHMT2-219ENST00000555563 PPM1GO15355 546 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-219ENST00000555563 MARCH10Q8NA82 808 aaPredicted RBP18.81■□□□□ 0.6
SHMT2-219ENST00000555563 POLKQ9UBT6 870 aa18.81■□□□□ 0.6
SHMT2-219ENST00000555563 MEGF6O75095 1541 aa18.8■□□□□ 0.6
SHMT2-219ENST00000555563 EXOC5O00471 708 aa18.8■□□□□ 0.6
SHMT2-219ENST00000555563 BAG6P46379 1132 aa18.8■□□□□ 0.6
SHMT2-219ENST00000555563 AMER1Q5JTC6 1135 aaPredicted RBP18.8■□□□□ 0.6
SHMT2-219ENST00000555563 BCL9O00512 1426 aa18.79■□□□□ 0.6
SHMT2-219ENST00000555563 SHANK3Q9BYB0 1731 aa18.79■□□□□ 0.6
SHMT2-219ENST00000555563 NBPF6Q5VWK0 638 aa18.78■□□□□ 0.6
SHMT2-219ENST00000555563 MORC1Q86VD1 984 aa18.78■□□□□ 0.6
SHMT2-219ENST00000555563 USHBP1Q8N6Y0 703 aa18.78■□□□□ 0.6
SHMT2-219ENST00000555563 NBPF4Q96M43 638 aa18.78■□□□□ 0.6
SHMT2-219ENST00000555563 PER1O15534 1290 aaPredicted RBP18.77■□□□□ 0.6
SHMT2-219ENST00000555563 NCAPD2Q15021 1401 aa18.76■□□□□ 0.59
SHMT2-219ENST00000555563 NHSQ6T4R5 1651 aa18.76■□□□□ 0.59
SHMT2-219ENST00000555563 EN1Q05925 392 aaPredicted RBP18.75■□□□□ 0.59
SHMT2-219ENST00000555563 RREB1Q92766 1687 aa18.74■□□□□ 0.59
SHMT2-219ENST00000555563 RGPD3A6NKT7 1758 aaPredicted RBP18.73■□□□□ 0.59
SHMT2-219ENST00000555563 RGPD4Q7Z3J3 1758 aa18.73■□□□□ 0.59
SHMT2-219ENST00000555563 APBA3O96018 575 aa18.73■□□□□ 0.59
SHMT2-219ENST00000555563 NPC1L1Q9UHC9 1359 aa18.72■□□□□ 0.59
SHMT2-219ENST00000555563 PTF1AQ7RTS3 328 aa18.72■□□□□ 0.59
SHMT2-219ENST00000555563 PKD1L3Q7Z443 1732 aa18.71■□□□□ 0.59
SHMT2-219ENST00000555563 PARD3Q8TEW0 1356 aa18.71■□□□□ 0.59
SHMT2-219ENST00000555563 EIF4A2Q14240 407 aaKnown RBP18.71■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms