RNA–Protein interactions for RNA: ENST00000555178.5

TDP1-211, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 2,200 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-211ENST00000555178 PNISRQ8TF01 805 aaKnown RBP14.47□□□□□ -0.09
TDP1-211ENST00000555178 CDK12Q9NYV4 1490 aaPredicted RBP14.47□□□□□ -0.09
TDP1-211ENST00000555178 FAM83GA6ND36 823 aa14.47□□□□□ -0.09
TDP1-211ENST00000555178 LTV1Q96GA3 475 aaPredicted RBP14.47□□□□□ -0.09
TDP1-211ENST00000555178 LMO7Q8WWI1 1683 aa14.47□□□□□ -0.09
TDP1-211ENST00000555178 CAMTA1Q9Y6Y1 1673 aa14.47□□□□□ -0.09
TDP1-211ENST00000555178 AMPHP49418 695 aa14.46□□□□□ -0.09
TDP1-211ENST00000555178 EIF4A2Q14240 407 aaKnown RBP14.46□□□□□ -0.1
TDP1-211ENST00000555178 JCADQ9P266 1359 aa14.45□□□□□ -0.1
TDP1-211ENST00000555178 HAP1P54257 671 aaPredicted RBP14.45□□□□□ -0.1
TDP1-211ENST00000555178 RGPD1P0DJD0 1748 aa14.45□□□□□ -0.1
TDP1-211ENST00000555178 IL13P35225 146 aa14.45□□□□□ -0.1
TDP1-211ENST00000555178 IP6K1Q92551 441 aa14.45□□□□□ -0.1
TDP1-211ENST00000555178 FLT4P35916 1363 aa14.44□□□□□ -0.1
TDP1-211ENST00000555178 PLCH1Q4KWH8 1693 aa14.44□□□□□ -0.1
TDP1-211ENST00000555178 CPDO75976 1380 aa14.44□□□□□ -0.1
TDP1-211ENST00000555178 INSRP06213 1382 aa14.44□□□□□ -0.1
TDP1-211ENST00000555178 ADAMTS8Q9UP79 889 aa14.43□□□□□ -0.1
TDP1-211ENST00000555178 FBXO41Q8TF61 875 aa14.43□□□□□ -0.1
TDP1-211ENST00000555178 PRDM11Q9NQV5 511 aa14.43□□□□□ -0.1
TDP1-211ENST00000555178 USHBP1Q8N6Y0 703 aa14.42□□□□□ -0.1
TDP1-211ENST00000555178 DIAPH1O60610 1272 aaKnown RBP14.42□□□□□ -0.1
TDP1-211ENST00000555178 AEBP1Q8IUX7 1158 aa14.42□□□□□ -0.1
TDP1-211ENST00000555178 U2SURPO15042 1029 aaKnown RBP14.41□□□□□ -0.1
TDP1-211ENST00000555178 COL14A1Q05707 1796 aaKnown RBP14.41□□□□□ -0.1
TDP1-211ENST00000555178 HMOX1P09601 288 aa14.41□□□□□ -0.1
TDP1-211ENST00000555178 NRAPQ86VF7 1730 aa14.4□□□□□ -0.1
TDP1-211ENST00000555178 NBPF6Q5VWK0 638 aa14.4□□□□□ -0.1
TDP1-211ENST00000555178 CCDC146Q8IYE0 955 aa14.4□□□□□ -0.1
TDP1-211ENST00000555178 ANKRD24Q8TF21 1146 aa14.4□□□□□ -0.1
TDP1-211ENST00000555178 NBPF4Q96M43 638 aa14.4□□□□□ -0.1
TDP1-211ENST00000555178 EYA1Q99502 592 aa14.4□□□□□ -0.1
TDP1-211ENST00000555178 RTL1A6NKG5 1358 aa14.4□□□□□ -0.1
TDP1-211ENST00000555178 CFAP53Q96M91 514 aa14.39□□□□□ -0.11
TDP1-211ENST00000555178 BTG4Q9NY30 223 aa14.39□□□□□ -0.11
TDP1-211ENST00000555178 COL5A2P05997 1499 aaPredicted RBP14.38□□□□□ -0.11
TDP1-211ENST00000555178 U2AF1L5P0DN76 240 aaPredicted RBP14.38□□□□□ -0.11
TDP1-211ENST00000555178 U2AF1Q01081 240 aaKnown RBP eCLIP14.38□□□□□ -0.11
TDP1-211ENST00000555178 FAM208AQ9UK61 1670 aaKnown RBP14.38□□□□□ -0.11
TDP1-211ENST00000555178 ERBB3P21860 1342 aa14.38□□□□□ -0.11
TDP1-211ENST00000555178 KIF24Q5T7B8 1368 aa14.38□□□□□ -0.11
TDP1-211ENST00000555178 HNRNPUQ00839 825 aaKnown RBP eCLIP14.38□□□□□ -0.11
TDP1-211ENST00000555178 WDR43Q15061 677 aaKnown RBP eCLIP14.38□□□□□ -0.11
TDP1-211ENST00000555178 STRN4Q9NRL3 753 aa14.38□□□□□ -0.11
TDP1-211ENST00000555178 LARP1Q6PKG0 1096 aaKnown RBP14.37□□□□□ -0.11
TDP1-211ENST00000555178 C8orf37Q96NL8 207 aa14.37□□□□□ -0.11
TDP1-211ENST00000555178 BLMP54132 1417 aaPredicted RBP14.37□□□□□ -0.11
TDP1-211ENST00000555178 SULT6B1Q6IMI4 303 aa14.36□□□□□ -0.11
TDP1-211ENST00000555178 SPATA31A6Q5VVP1 1343 aa14.36□□□□□ -0.11
TDP1-211ENST00000555178 ABCC6O95255 1503 aa14.35□□□□□ -0.11
TDP1-211ENST00000555178 PHACTR3Q96KR7 559 aa14.35□□□□□ -0.11
TDP1-211ENST00000555178 RSPH6AQ9H0K4 717 aa14.35□□□□□ -0.11
TDP1-211ENST00000555178 IGSF1Q8N6C5 1336 aa14.35□□□□□ -0.11
TDP1-211ENST00000555178 DLG5Q8TDM6 1919 aa14.35□□□□□ -0.11
TDP1-211ENST00000555178 SLIT2O94813 1529 aa14.34□□□□□ -0.11
TDP1-211ENST00000555178 NWD2Q9ULI1 1742 aa14.34□□□□□ -0.11
TDP1-211ENST00000555178 PLEKHF1Q96S99 279 aa14.34□□□□□ -0.11
TDP1-211ENST00000555178 BCL9LQ86UU0 1499 aa14.34□□□□□ -0.11
TDP1-211ENST00000555178 NGLY1Q96IV0 654 aa14.33□□□□□ -0.12
TDP1-211ENST00000555178 NLRP2Q9NX02 1062 aa14.33□□□□□ -0.12
TDP1-211ENST00000555178 CSB-PGBD3P0DP91 1061 aa14.33□□□□□ -0.12
TDP1-211ENST00000555178 PRKAR2BP31323 418 aa14.33□□□□□ -0.12
TDP1-211ENST00000555178 USP35Q9P2H5 1018 aa14.33□□□□□ -0.12
TDP1-211ENST00000555178 SALL2Q9Y467 1007 aaPredicted RBP14.33□□□□□ -0.12
TDP1-211ENST00000555178 ILDR1Q86SU0 546 aaPredicted RBP14.32□□□□□ -0.12
TDP1-211ENST00000555178 WDR17Q8IZU2 1322 aa14.32□□□□□ -0.12
TDP1-211ENST00000555178 NUDCQ9Y266 331 aa14.32□□□□□ -0.12
TDP1-211ENST00000555178 RRP7AQ9Y3A4 280 aaKnown RBP14.31□□□□□ -0.12
TDP1-211ENST00000555178 NCAPD2Q15021 1401 aa14.31□□□□□ -0.12
TDP1-211ENST00000555178 EVA1CP58658 441 aa14.31□□□□□ -0.12
TDP1-211ENST00000555178 KDRP35968 1356 aa14.3□□□□□ -0.12
TDP1-211ENST00000555178 TOM1L2Q6ZVM7 507 aa14.3□□□□□ -0.12
TDP1-211ENST00000555178 MEGF6O75095 1541 aa14.3□□□□□ -0.12
TDP1-211ENST00000555178 APAF1O14727 1248 aa14.3□□□□□ -0.12
TDP1-211ENST00000555178 MEX3CQ5U5Q3 659 aaKnown RBP14.3□□□□□ -0.12
TDP1-211ENST00000555178 AFF2P51816 1311 aa14.29□□□□□ -0.12
TDP1-211ENST00000555178 WNK3Q9BYP7 1800 aa14.29□□□□□ -0.12
TDP1-211ENST00000555178 FNBP4Q8N3X1 1017 aaPredicted RBP14.29□□□□□ -0.12
TDP1-211ENST00000555178 VIRMAQ69YN4 1812 aaKnown RBP14.29□□□□□ -0.12
TDP1-211ENST00000555178 SHANK3Q9BYB0 1731 aa14.28□□□□□ -0.12
TDP1-211ENST00000555178 FCHSD2O94868 740 aa14.28□□□□□ -0.12
TDP1-211ENST00000555178 NEUROD2Q15784 382 aa14.28□□□□□ -0.12
TDP1-211ENST00000555178 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.28□□□□□ -0.12
TDP1-211ENST00000555178 TCP11L2Q8N4U5 519 aa14.27□□□□□ -0.12
TDP1-211ENST00000555178 USP21Q9UK80 565 aa14.27□□□□□ -0.12
TDP1-211ENST00000555178 CRB1P82279 1406 aa14.27□□□□□ -0.12
TDP1-211ENST00000555178 UNC5CLQ8IV45 518 aa14.27□□□□□ -0.13
TDP1-211ENST00000555178 RUNDC1Q96C34 613 aa14.27□□□□□ -0.13
TDP1-211ENST00000555178 CARD10Q9BWT7 1032 aa14.26□□□□□ -0.13
TDP1-211ENST00000555178 MTHFSDQ2M296 383 aaKnown RBP14.26□□□□□ -0.13
TDP1-211ENST00000555178 GLI3P10071 1580 aa14.26□□□□□ -0.13
TDP1-211ENST00000555178 ZBED9Q6R2W3 1325 aa14.25□□□□□ -0.13
TDP1-211ENST00000555178 SPATA31A1Q5TZJ5 1347 aa14.25□□□□□ -0.13
TDP1-211ENST00000555178 SPATA31A5Q5VU36 1347 aa14.24□□□□□ -0.13
TDP1-211ENST00000555178 SPATA31A7Q8IWB4 1347 aa14.24□□□□□ -0.13
TDP1-211ENST00000555178 RGS17Q9UGC6 210 aaPredicted RBP14.24□□□□□ -0.13
TDP1-211ENST00000555178 CCDC9Q9Y3X0 531 aaKnown RBP14.24□□□□□ -0.13
TDP1-211ENST00000555178 PKD1L3Q7Z443 1732 aa14.24□□□□□ -0.13
TDP1-211ENST00000555178 PARP4Q9UKK3 1724 aaKnown RBP14.24□□□□□ -0.13
TDP1-211ENST00000555178 TMPOP42166 694 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms