RNA–Protein interactions for RNA: ENST00000553801.1

SYNE2-211, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-211ENST00000553801 RGPD4Q7Z3J3 1758 aa25.47■■□□□ 1.67
SYNE2-211ENST00000553801 SBF2Q86WG5 1849 aa25.47■■□□□ 1.67
SYNE2-211ENST00000553801 NINLQ9Y2I6 1382 aa25.46■■□□□ 1.67
SYNE2-211ENST00000553801 LRRC37A3O60309 1634 aa25.46■■□□□ 1.67
SYNE2-211ENST00000553801 AXIN2Q9Y2T1 843 aa25.46■■□□□ 1.67
SYNE2-211ENST00000553801 ARHGEF25Q86VW2 580 aa25.45■■□□□ 1.66
SYNE2-211ENST00000553801 L3MBTL2Q969R5 705 aa25.45■■□□□ 1.66
SYNE2-211ENST00000553801 COL18A1P39060 1754 aa25.45■■□□□ 1.66
SYNE2-211ENST00000553801 TTC21BQ7Z4L5 1316 aa25.44■■□□□ 1.66
SYNE2-211ENST00000553801 PIK3C2AO00443 1686 aa25.44■■□□□ 1.66
SYNE2-211ENST00000553801 CPSF1Q10570 1443 aaKnown RBP25.44■■□□□ 1.66
SYNE2-211ENST00000553801 CSB-PGBD3P0DP91 1061 aa25.43■■□□□ 1.66
SYNE2-211ENST00000553801 MARCH10Q8NA82 808 aaPredicted RBP25.43■■□□□ 1.66
SYNE2-211ENST00000553801 CARD10Q9BWT7 1032 aa25.43■■□□□ 1.66
SYNE2-211ENST00000553801 BCL9O00512 1426 aa25.43■■□□□ 1.66
SYNE2-211ENST00000553801 TTC21AQ8NDW8 1320 aa25.42■■□□□ 1.66
SYNE2-211ENST00000553801 TRPM1Q7Z4N2 1603 aa25.41■■□□□ 1.66
SYNE2-211ENST00000553801 EXOC5O00471 708 aa25.4■■□□□ 1.66
SYNE2-211ENST00000553801 ANO8Q9HCE9 1232 aaPredicted RBP25.4■■□□□ 1.66
SYNE2-211ENST00000553801 SOX12O15370 315 aa25.39■■□□□ 1.66
SYNE2-211ENST00000553801 PTF1AQ7RTS3 328 aa25.39■■□□□ 1.66
SYNE2-211ENST00000553801 WNK3Q9BYP7 1800 aa25.38■■□□□ 1.65
SYNE2-211ENST00000553801 AKAP12Q02952 1782 aa25.38■■□□□ 1.65
SYNE2-211ENST00000553801 ROCK2O75116 1388 aaKnown RBP25.37■■□□□ 1.65
SYNE2-211ENST00000553801 PROM2Q8N271 834 aa25.37■■□□□ 1.65
SYNE2-211ENST00000553801 CCDC7Q96M83 1385 aa25.36■■□□□ 1.65
SYNE2-211ENST00000553801 RGPD5Q99666 1765 aa25.36■■□□□ 1.65
SYNE2-211ENST00000553801 STK32BQ9NY57 414 aa25.35■■□□□ 1.65
SYNE2-211ENST00000553801 KTN1Q86UP2 1357 aaKnown RBP25.34■■□□□ 1.65
SYNE2-211ENST00000553801 TXNRD1Q16881 649 aa25.34■■□□□ 1.65
SYNE2-211ENST00000553801 CASZ1Q86V15 1759 aa25.33■■□□□ 1.65
SYNE2-211ENST00000553801 ZBTB7AO95365 584 aa25.32■■□□□ 1.64
SYNE2-211ENST00000553801 SIN3AQ96ST3 1273 aa25.31■■□□□ 1.64
SYNE2-211ENST00000553801 ABCC6O95255 1503 aa25.31■■□□□ 1.64
SYNE2-211ENST00000553801 SLC15A2Q16348 729 aa25.3■■□□□ 1.64
SYNE2-211ENST00000553801 PDGFDQ9GZP0 370 aaPredicted RBP25.3■■□□□ 1.64
SYNE2-211ENST00000553801 NFAT5O94916 1531 aa25.3■■□□□ 1.64
SYNE2-211ENST00000553801 NEUROD1Q13562 356 aa25.28■■□□□ 1.64
SYNE2-211ENST00000553801 ATF5Q9Y2D1 282 aaPredicted RBP25.28■■□□□ 1.64
SYNE2-211ENST00000553801 TNS2Q63HR2 1409 aa25.28■■□□□ 1.64
SYNE2-211ENST00000553801 PTGER2P43116 358 aa25.27■■□□□ 1.64
SYNE2-211ENST00000553801 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.27■■□□□ 1.64
SYNE2-211ENST00000553801 NLRP2Q9NX02 1062 aa25.26■■□□□ 1.63
SYNE2-211ENST00000553801 USP31Q70CQ4 1352 aa25.26■■□□□ 1.63
SYNE2-211ENST00000553801 MTFR1LQ9H019 292 aa25.24■■□□□ 1.63
SYNE2-211ENST00000553801 SBNO2Q9Y2G9 1366 aa25.23■■□□□ 1.63
SYNE2-211ENST00000553801 ERBB3P21860 1342 aa25.23■■□□□ 1.63
SYNE2-211ENST00000553801 IL2RBP14784 551 aa25.23■■□□□ 1.63
SYNE2-211ENST00000553801 MON2Q7Z3U7 1717 aa25.23■■□□□ 1.63
SYNE2-211ENST00000553801 ACSBG1Q96GR2 724 aa25.22■■□□□ 1.63
SYNE2-211ENST00000553801 HDGFL2Q7Z4V5 671 aaPredicted RBP25.21■■□□□ 1.63
SYNE2-211ENST00000553801 KAT6BQ8WYB5 2073 aa25.21■■□□□ 1.63
SYNE2-211ENST00000553801 MYOM1P52179 1685 aa25.2■■□□□ 1.63
SYNE2-211ENST00000553801 NHSQ6T4R5 1651 aa25.2■■□□□ 1.63
SYNE2-211ENST00000553801 NME9Q86XW9 330 aa25.2■■□□□ 1.62
SYNE2-211ENST00000553801 TMC1Q8TDI8 760 aa25.2■■□□□ 1.62
SYNE2-211ENST00000553801 SYT17Q9BSW7 474 aa25.2■■□□□ 1.62
SYNE2-211ENST00000553801 FHDC1Q9C0D6 1143 aaPredicted RBP25.19■■□□□ 1.62
SYNE2-211ENST00000553801 ANKRD24Q8TF21 1146 aa25.18■■□□□ 1.62
SYNE2-211ENST00000553801 CARD11Q9BXL7 1154 aa25.18■■□□□ 1.62
SYNE2-211ENST00000553801 USP54Q70EL1 1684 aa25.17■■□□□ 1.62
SYNE2-211ENST00000553801 TERF2IPQ9NYB0 399 aa25.16■■□□□ 1.62
SYNE2-211ENST00000553801 SGIP1Q9BQI5 828 aa25.15■■□□□ 1.62
SYNE2-211ENST00000553801 LTN1O94822 1766 aa25.15■■□□□ 1.62
SYNE2-211ENST00000553801 CD163L1Q9NR16 1453 aa25.15■■□□□ 1.62
SYNE2-211ENST00000553801 SLC12A5Q9H2X9 1139 aa25.14■■□□□ 1.62
SYNE2-211ENST00000553801 EDC4Q6P2E9 1401 aaKnown RBP25.13■■□□□ 1.61
SYNE2-211ENST00000553801 ARXQ96QS3 562 aa25.13■■□□□ 1.61
SYNE2-211ENST00000553801 ZNF784Q8NCA9 323 aaPredicted RBP25.11■■□□□ 1.61
SYNE2-211ENST00000553801 PUS7Q96PZ0 661 aaKnown RBP25.11■■□□□ 1.61
SYNE2-211ENST00000553801 BTAF1O14981 1849 aa25.11■■□□□ 1.61
SYNE2-211ENST00000553801 IP6K1Q92551 441 aa25.1■■□□□ 1.61
SYNE2-211ENST00000553801 PAPPAQ13219 1627 aa25.08■■□□□ 1.61
SYNE2-211ENST00000553801 SLC27A3Q5K4L6 730 aa25.08■■□□□ 1.61
SYNE2-211ENST00000553801 MAP3K5Q99683 1374 aa25.07■■□□□ 1.6
SYNE2-211ENST00000553801 ZNF827Q17R98 1081 aa25.07■■□□□ 1.6
SYNE2-211ENST00000553801 DDX54Q8TDD1 881 aaKnown RBP25.07■■□□□ 1.6
SYNE2-211ENST00000553801 SLC16A10Q8TF71 515 aa25.07■■□□□ 1.6
SYNE2-211ENST00000553801 LRRC4BQ9NT99 713 aa25.07■■□□□ 1.6
SYNE2-211ENST00000553801 CHD4Q14839 1912 aa25.07■■□□□ 1.6
SYNE2-211ENST00000553801 A0A1W2PP64 1363 aa25.06■■□□□ 1.6
SYNE2-211ENST00000553801 AKT1S1Q96B36 256 aa25.04■■□□□ 1.6
SYNE2-211ENST00000553801 LTV1Q96GA3 475 aaPredicted RBP25.04■■□□□ 1.6
SYNE2-211ENST00000553801 POLD1P28340 1107 aa25.03■■□□□ 1.6
SYNE2-211ENST00000553801 FAM208AQ9UK61 1670 aaKnown RBP25.02■■□□□ 1.6
SYNE2-211ENST00000553801 COG3Q96JB2 828 aa25.02■■□□□ 1.6
SYNE2-211ENST00000553801 SLC24A1O60721 1099 aa25.01■■□□□ 1.59
SYNE2-211ENST00000553801 GPR162Q16538 588 aa25.01■■□□□ 1.59
SYNE2-211ENST00000553801 AMPHP49418 695 aa25■■□□□ 1.59
SYNE2-211ENST00000553801 SYTL4Q96C24 671 aaPredicted RBP25■■□□□ 1.59
SYNE2-211ENST00000553801 TONSLQ96HA7 1378 aa24.99■■□□□ 1.59
SYNE2-211ENST00000553801 TFCP2L1Q9NZI6 479 aa24.99■■□□□ 1.59
SYNE2-211ENST00000553801 PRIM1P49642 420 aaKnown RBP24.98■■□□□ 1.59
SYNE2-211ENST00000553801 QSER1Q2KHR3 1735 aa24.98■■□□□ 1.59
SYNE2-211ENST00000553801 ANKRD36BQ8N2N9 1353 aa24.97■■□□□ 1.59
SYNE2-211ENST00000553801 MAP3K19Q56UN5 1328 aa24.97■■□□□ 1.59
SYNE2-211ENST00000553801 HOXC9P31274 260 aa24.97■■□□□ 1.59
SYNE2-211ENST00000553801 KLHL34Q8N239 644 aa24.97■■□□□ 1.59
SYNE2-211ENST00000553801 ZCRB1Q8TBF4 217 aaKnown RBP24.97■■□□□ 1.59
SYNE2-211ENST00000553801 PNPLA7Q6ZV29 1317 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms