RNA–Protein interactions for RNA: ENST00000553686.5

ATXN3-223, Transcript of ataxin 3, human

TSL 1 (best)

Gene ATXN3, Length 869 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATXN3-223	ENST00000553686	SH3BP2	P78314	561 aa		10.63	□□□□□ -0.71
ATXN3-223	ENST00000553686	LINC01559	Q495D7	138 aa		10.63	□□□□□ -0.71
ATXN3-223	ENST00000553686		Q6ZNB5	142 aa		10.63	□□□□□ -0.71
ATXN3-223	ENST00000553686	COL17A1	Q9UMD9	1497 aa	Predicted RBP	10.62	□□□□□ -0.71
ATXN3-223	ENST00000553686	TMEM259	Q4ZIN3	620 aa		10.62	□□□□□ -0.71
ATXN3-223	ENST00000553686	CYP4X1	Q8N118	509 aa		10.62	□□□□□ -0.71
ATXN3-223	ENST00000553686	MRGPRX2	Q96LB1	330 aa		10.62	□□□□□ -0.71
ATXN3-223	ENST00000553686	TOP2B	Q02880	1626 aa		10.62	□□□□□ -0.71
ATXN3-223	ENST00000553686	PTPRG	P23470	1445 aa		10.61	□□□□□ -0.71
ATXN3-223	ENST00000553686	PBRM1	Q86U86	1689 aa		10.6	□□□□□ -0.71
ATXN3-223	ENST00000553686	ABCA5	Q8WWZ7	1642 aa		10.6	□□□□□ -0.71
ATXN3-223	ENST00000553686	TTC24	A2A3L6	582 aa	Predicted RBP	10.6	□□□□□ -0.71
ATXN3-223	ENST00000553686	ZNF511	Q8NB15	262 aa		10.6	□□□□□ -0.71
ATXN3-223	ENST00000553686	TOR4A	Q9NXH8	423 aa		10.6	□□□□□ -0.71
ATXN3-223	ENST00000553686	TEX14	Q8IWB6	1497 aa		10.6	□□□□□ -0.71
ATXN3-223	ENST00000553686	ASXL2	Q76L83	1435 aa		10.59	□□□□□ -0.71
ATXN3-223	ENST00000553686	ARMC2	Q8NEN0	867 aa		10.59	□□□□□ -0.71
ATXN3-223	ENST00000553686	SNIP1	Q8TAD8	396 aa	Known RBP	10.59	□□□□□ -0.71
ATXN3-223	ENST00000553686	ADAMTS12	P58397	1594 aa		10.59	□□□□□ -0.71
ATXN3-223	ENST00000553686	ADCY10	Q96PN6	1610 aa		10.58	□□□□□ -0.72
ATXN3-223	ENST00000553686	USP17L8	P0C7I0	530 aa		10.58	□□□□□ -0.72
ATXN3-223	ENST00000553686	EHBP1	Q8NDI1	1231 aa		10.58	□□□□□ -0.72
ATXN3-223	ENST00000553686	TTBK1	Q5TCY1	1321 aa	Predicted RBP	10.58	□□□□□ -0.72
ATXN3-223	ENST00000553686	FAM187A	A6NFU0	413 aa		10.57	□□□□□ -0.72
ATXN3-223	ENST00000553686	DGAT1	O75907	488 aa		10.57	□□□□□ -0.72
ATXN3-223	ENST00000553686	NR6A1	Q15406	480 aa		10.57	□□□□□ -0.72
ATXN3-223	ENST00000553686	PKDCC	Q504Y2	493 aa		10.57	□□□□□ -0.72
ATXN3-223	ENST00000553686	TSPOAP1	O95153	1857 aa		10.56	□□□□□ -0.72
ATXN3-223	ENST00000553686	GLI2	P10070	1586 aa		10.56	□□□□□ -0.72
ATXN3-223	ENST00000553686	SIAH2	O43255	324 aa		10.55	□□□□□ -0.72
ATXN3-223	ENST00000553686	AGER	Q15109	404 aa		10.55	□□□□□ -0.72
ATXN3-223	ENST00000553686	TRAF7	Q6Q0C0	670 aa		10.55	□□□□□ -0.72
ATXN3-223	ENST00000553686	FOXJ1	Q92949	421 aa		10.55	□□□□□ -0.72
ATXN3-223	ENST00000553686	ERICH3	Q5RHP9	1530 aa		10.54	□□□□□ -0.72
ATXN3-223	ENST00000553686	ABCC2	Q92887	1545 aa		10.54	□□□□□ -0.72
ATXN3-223	ENST00000553686	VARS	P26640	1264 aa	Known RBP	10.54	□□□□□ -0.72
ATXN3-223	ENST00000553686	HMX1	Q9NP08	348 aa	Predicted RBP	10.54	□□□□□ -0.72
ATXN3-223	ENST00000553686		J3QL48	77 aa		10.53	□□□□□ -0.72
ATXN3-223	ENST00000553686	EPS8L1	Q8TE68	723 aa		10.53	□□□□□ -0.72
ATXN3-223	ENST00000553686	FKBPL	Q9UIM3	349 aa		10.53	□□□□□ -0.72
ATXN3-223	ENST00000553686	ALDH1A1	P00352	501 aa		10.52	□□□□□ -0.73
ATXN3-223	ENST00000553686	NBPF14	Q5TI25	921 aa		10.52	□□□□□ -0.73
ATXN3-223	ENST00000553686	BPHL	Q86WA6	291 aa	Predicted RBP	10.52	□□□□□ -0.73
ATXN3-223	ENST00000553686	BANK1	Q8NDB2	785 aa		10.52	□□□□□ -0.73
ATXN3-223	ENST00000553686	KIAA0586	Q9BVV6	1533 aa		10.52	□□□□□ -0.73
ATXN3-223	ENST00000553686	TNIK	Q9UKE5	1360 aa		10.52	□□□□□ -0.73
ATXN3-223	ENST00000553686	SMPD1	P17405	629 aa		10.51	□□□□□ -0.73
ATXN3-223	ENST00000553686	CARMIL2	Q6F5E8	1435 aa		10.5	□□□□□ -0.73
ATXN3-223	ENST00000553686	PTPRM	P28827	1452 aa		10.5	□□□□□ -0.73
ATXN3-223	ENST00000553686	C4orf48	Q5BLP8	95 aa		10.5	□□□□□ -0.73
ATXN3-223	ENST00000553686	FAM174A	Q8TBP5	190 aa		10.5	□□□□□ -0.73
ATXN3-223	ENST00000553686	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	10.5	□□□□□ -0.73
ATXN3-223	ENST00000553686	EPRS	P07814	1512 aa	Known RBP	10.49	□□□□□ -0.73
ATXN3-223	ENST00000553686	LCE2B	O14633	110 aa		10.49	□□□□□ -0.73
ATXN3-223	ENST00000553686	MYT1	Q01538	1121 aa		10.49	□□□□□ -0.73
ATXN3-223	ENST00000553686	PDXDC2P	Q6P474	469 aa		10.49	□□□□□ -0.73
ATXN3-223	ENST00000553686	SH3BP5L	Q7L8J4	393 aa		10.48	□□□□□ -0.73
ATXN3-223	ENST00000553686	PNMA1	Q8ND90	353 aa		10.48	□□□□□ -0.73
ATXN3-223	ENST00000553686	TRIM34	Q9BYJ4	488 aa		10.48	□□□□□ -0.73
ATXN3-223	ENST00000553686	MAGEB6P1	A0A0J9YX57	407 aa		10.47	□□□□□ -0.73
ATXN3-223	ENST00000553686	HSPA2	P54652	639 aa		10.47	□□□□□ -0.73
ATXN3-223	ENST00000553686	SNRK	Q9NRH2	765 aa		10.47	□□□□□ -0.73
ATXN3-223	ENST00000553686	WASF2	Q9Y6W5	498 aa		10.47	□□□□□ -0.73
ATXN3-223	ENST00000553686	ARID5B	Q14865	1188 aa		10.46	□□□□□ -0.73
ATXN3-223	ENST00000553686	SH3RF1	Q7Z6J0	888 aa		10.46	□□□□□ -0.73
ATXN3-223	ENST00000553686	ARID4B	Q4LE39	1312 aa	Predicted RBP	10.46	□□□□□ -0.73
ATXN3-223	ENST00000553686	ZC3H4	Q9UPT8	1303 aa	Known RBP	10.46	□□□□□ -0.73
ATXN3-223	ENST00000553686	UACA	Q9BZF9	1416 aa		10.46	□□□□□ -0.74
ATXN3-223	ENST00000553686	UHRF1BP1L	A0JNW5	1464 aa		10.46	□□□□□ -0.74
ATXN3-223	ENST00000553686	AVP	P01185	164 aa		10.45	□□□□□ -0.74
ATXN3-223	ENST00000553686	MPND	Q8N594	471 aa		10.45	□□□□□ -0.74
ATXN3-223	ENST00000553686	HPS1	Q92902	700 aa		10.45	□□□□□ -0.74
ATXN3-223	ENST00000553686	GJD4	Q96KN9	370 aa	Predicted RBP	10.45	□□□□□ -0.74
ATXN3-223	ENST00000553686	ARHGAP9	Q9BRR9	750 aa		10.45	□□□□□ -0.74
ATXN3-223	ENST00000553686	TLL2	Q9Y6L7	1015 aa		10.45	□□□□□ -0.74
ATXN3-223	ENST00000553686	CD109	Q6YHK3	1445 aa		10.44	□□□□□ -0.74
ATXN3-223	ENST00000553686	PTK2	Q05397	1052 aa		10.44	□□□□□ -0.74
ATXN3-223	ENST00000553686	CARD14	Q9BXL6	1004 aa		10.44	□□□□□ -0.74
ATXN3-223	ENST00000553686	PPRC1	Q5VV67	1664 aa	Known RBP	10.44	□□□□□ -0.74
ATXN3-223	ENST00000553686	PCF11	O94913	1555 aa	Known RBP	10.43	□□□□□ -0.74
ATXN3-223	ENST00000553686	RUSC2	Q8N2Y8	1516 aa		10.43	□□□□□ -0.74
ATXN3-223	ENST00000553686	ZBTB33	Q86T24	672 aa		10.43	□□□□□ -0.74
ATXN3-223	ENST00000553686	MTMR14	Q8NCE2	650 aa		10.43	□□□□□ -0.74
ATXN3-223	ENST00000553686	CDK15	Q96Q40	435 aa		10.43	□□□□□ -0.74
ATXN3-223	ENST00000553686	AAAS	Q9NRG9	546 aa		10.43	□□□□□ -0.74
ATXN3-223	ENST00000553686	TMEM132A	Q24JP5	1023 aa		10.42	□□□□□ -0.74
ATXN3-223	ENST00000553686	C1QTNF2	Q9BXJ5	285 aa		10.42	□□□□□ -0.74
ATXN3-223	ENST00000553686	GPSM3	Q9Y4H4	160 aa		10.42	□□□□□ -0.74
ATXN3-223	ENST00000553686	AXIN1	O15169	862 aa		10.41	□□□□□ -0.74
ATXN3-223	ENST00000553686	ST8SIA5	O15466	376 aa		10.41	□□□□□ -0.74
ATXN3-223	ENST00000553686	CTC1	Q2NKJ3	1217 aa		10.41	□□□□□ -0.74
ATXN3-223	ENST00000553686	MAGI3	Q5TCQ9	1506 aa		10.4	□□□□□ -0.74
ATXN3-223	ENST00000553686	GRM5	P41594	1212 aa		10.4	□□□□□ -0.74
ATXN3-223	ENST00000553686	ERFE	Q4G0M1	354 aa		10.4	□□□□□ -0.74
ATXN3-223	ENST00000553686	OCSTAMP	Q9BR26	566 aa		10.4	□□□□□ -0.74
ATXN3-223	ENST00000553686	SPATA31D1	Q6ZQQ2	1576 aa		10.39	□□□□□ -0.75
ATXN3-223	ENST00000553686	KDM5B	Q9UGL1	1544 aa		10.39	□□□□□ -0.75
ATXN3-223	ENST00000553686	SMCP	P49901	116 aa	Predicted RBP	10.39	□□□□□ -0.75
ATXN3-223	ENST00000553686	TRMT44	Q8IYL2	757 aa	Known RBP	10.39	□□□□□ -0.75
ATXN3-223	ENST00000553686	CRIPAK	Q8N1N5	446 aa		10.39	□□□□□ -0.75

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