RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 PTPN23Q9H3S7 1636 aa7.44□□□□□ -1.22
VTI1B-202ENST00000553619 TCOF1Q13428 1488 aaKnown RBP7.43□□□□□ -1.22
VTI1B-202ENST00000553619 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.43□□□□□ -1.22
VTI1B-202ENST00000553619 AVPP01185 164 aa7.43□□□□□ -1.22
VTI1B-202ENST00000553619 HRCP23327 699 aa7.43□□□□□ -1.22
VTI1B-202ENST00000553619 CRIPAKQ8N1N5 446 aa7.43□□□□□ -1.22
VTI1B-202ENST00000553619 REPIN1Q9BWE0 567 aaKnown RBP7.43□□□□□ -1.22
VTI1B-202ENST00000553619 MYO5CQ9NQX4 1742 aa7.43□□□□□ -1.22
VTI1B-202ENST00000553619 PLEKHH2Q8IVE3 1493 aa7.43□□□□□ -1.22
VTI1B-202ENST00000553619 CDC42BPAQ5VT25 1732 aa7.42□□□□□ -1.22
VTI1B-202ENST00000553619 WNT7AO00755 349 aa7.42□□□□□ -1.22
VTI1B-202ENST00000553619 FAM69CQ0P6D2 419 aa7.42□□□□□ -1.22
VTI1B-202ENST00000553619 SYMPKQ92797 1274 aaKnown RBP7.42□□□□□ -1.22
VTI1B-202ENST00000553619 CD109Q6YHK3 1445 aa7.42□□□□□ -1.22
VTI1B-202ENST00000553619 ARAP3Q8WWN8 1544 aa7.42□□□□□ -1.22
VTI1B-202ENST00000553619 TTC24A2A3L6 582 aaPredicted RBP7.41□□□□□ -1.22
VTI1B-202ENST00000553619 CCDC24Q8N4L8 307 aa7.41□□□□□ -1.22
VTI1B-202ENST00000553619 ARHGAP5Q13017 1502 aa7.41□□□□□ -1.22
VTI1B-202ENST00000553619 ABCA9Q8IUA7 1624 aa7.41□□□□□ -1.22
VTI1B-202ENST00000553619 CDC42BPBQ9Y5S2 1711 aa7.41□□□□□ -1.22
VTI1B-202ENST00000553619 HNRNPMP52272 730 aaKnown RBP eCLIP7.4□□□□□ -1.22
VTI1B-202ENST00000553619 MRGPRX2Q96LB1 330 aa7.4□□□□□ -1.22
VTI1B-202ENST00000553619 KIAA1107Q9UPP5 1409 aa7.4□□□□□ -1.22
VTI1B-202ENST00000553619 GLI2P10070 1586 aa7.4□□□□□ -1.22
VTI1B-202ENST00000553619 PREX2Q70Z35 1606 aa7.4□□□□□ -1.22
VTI1B-202ENST00000553619 CAMSAP2Q08AD1 1489 aa7.39□□□□□ -1.23
VTI1B-202ENST00000553619 ZNF644Q9H582 1327 aaPredicted RBP7.39□□□□□ -1.23
VTI1B-202ENST00000553619 AXIN1O15169 862 aa7.39□□□□□ -1.23
VTI1B-202ENST00000553619 SMPD1P17405 629 aa7.39□□□□□ -1.23
VTI1B-202ENST00000553619 JUNDP17535 347 aa7.39□□□□□ -1.23
VTI1B-202ENST00000553619 SKOR1P84550 965 aa7.39□□□□□ -1.23
VTI1B-202ENST00000553619 NUTM1Q86Y26 1132 aa7.39□□□□□ -1.23
VTI1B-202ENST00000553619 TTC37Q6PGP7 1564 aa7.38□□□□□ -1.23
VTI1B-202ENST00000553619 SETD5Q9C0A6 1442 aa7.38□□□□□ -1.23
VTI1B-202ENST00000553619 J3QL48 77 aa7.38□□□□□ -1.23
VTI1B-202ENST00000553619 CTC1Q2NKJ3 1217 aa7.38□□□□□ -1.23
VTI1B-202ENST00000553619 SNIP1Q8TAD8 396 aaKnown RBP7.38□□□□□ -1.23
VTI1B-202ENST00000553619 GMPR2Q9P2T1 348 aaKnown RBP7.38□□□□□ -1.23
VTI1B-202ENST00000553619 CHIC2Q9UKJ5 165 aa7.38□□□□□ -1.23
VTI1B-202ENST00000553619 PCDHGC3Q9UN70 934 aa7.38□□□□□ -1.23
VTI1B-202ENST00000553619 CFAP74Q9C0B2 1584 aa7.37□□□□□ -1.23
VTI1B-202ENST00000553619 FANCAO15360 1455 aa7.37□□□□□ -1.23
VTI1B-202ENST00000553619 DAPK1P53355 1430 aa7.37□□□□□ -1.23
VTI1B-202ENST00000553619 ROCK1Q13464 1354 aa7.37□□□□□ -1.23
VTI1B-202ENST00000553619 ANKRD30AQ9BXX3 1397 aa7.37□□□□□ -1.23
VTI1B-202ENST00000553619 FDX1P10109 184 aa7.37□□□□□ -1.23
VTI1B-202ENST00000553619 SMCPP49901 116 aaPredicted RBP7.37□□□□□ -1.23
VTI1B-202ENST00000553619 RETREG3Q86VR2 466 aa7.37□□□□□ -1.23
VTI1B-202ENST00000553619 TEX14Q8IWB6 1497 aa7.36□□□□□ -1.23
VTI1B-202ENST00000553619 NEO1Q92859 1461 aa7.36□□□□□ -1.23
VTI1B-202ENST00000553619 ABCC5O15440 1437 aa7.36□□□□□ -1.23
VTI1B-202ENST00000553619 AKNAQ7Z591 1439 aa7.36□□□□□ -1.23
VTI1B-202ENST00000553619 SSTR3P32745 418 aaPredicted RBP7.36□□□□□ -1.23
VTI1B-202ENST00000553619 TTLL12Q14166 644 aaPredicted RBP7.36□□□□□ -1.23
VTI1B-202ENST00000553619 RC3H1Q5TC82 1133 aaKnown RBP7.36□□□□□ -1.23
VTI1B-202ENST00000553619 BARGINQ6ZT62 677 aa7.36□□□□□ -1.23
VTI1B-202ENST00000553619 DNMT1P26358 1616 aaKnown RBP7.36□□□□□ -1.23
VTI1B-202ENST00000553619 ARHGEF5Q12774 1597 aa7.36□□□□□ -1.23
VTI1B-202ENST00000553619 SCAPERQ9BY12 1400 aa7.35□□□□□ -1.23
VTI1B-202ENST00000553619 ZMYND10O75800 440 aa7.35□□□□□ -1.23
VTI1B-202ENST00000553619 ZEB1P37275 1124 aaPredicted RBP7.35□□□□□ -1.23
VTI1B-202ENST00000553619 PTCRAQ6ISU1 281 aaPredicted RBP7.35□□□□□ -1.23
VTI1B-202ENST00000553619 SPIRE2Q8WWL2 714 aa7.35□□□□□ -1.23
VTI1B-202ENST00000553619 NUDT12Q9BQG2 462 aa7.35□□□□□ -1.23
VTI1B-202ENST00000553619 RRP7BPQ9NSQ0 103 aa7.35□□□□□ -1.23
VTI1B-202ENST00000553619 CCDC141Q6ZP82 1450 aa7.35□□□□□ -1.23
VTI1B-202ENST00000553619 MBD5Q9P267 1494 aa7.35□□□□□ -1.23
VTI1B-202ENST00000553619 RTEL1-TNFRSF6BF6WH68 1400 aa7.35□□□□□ -1.23
VTI1B-202ENST00000553619 MAP3K4Q9Y6R4 1608 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 SAMD9LQ8IVG5 1584 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 DIP2BQ9P265 1576 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 SPAG9O60271 1321 aaKnown RBP7.34□□□□□ -1.23
VTI1B-202ENST00000553619 C6orf229H3BNL8 230 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 NDUFV2P19404 249 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 WNT7BP56706 349 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 CCER1Q8TC90 406 aaPredicted RBP7.34□□□□□ -1.23
VTI1B-202ENST00000553619 ZC3H15Q8WU90 426 aaKnown RBP7.34□□□□□ -1.23
VTI1B-202ENST00000553619 HPS1Q92902 700 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 ADGRL1O94910 1474 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 SHANK2Q9UPX8 1470 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 HFM1A2PYH4 1435 aa7.34□□□□□ -1.23
VTI1B-202ENST00000553619 MOXD2PA6NHM9 499 aa7.33□□□□□ -1.24
VTI1B-202ENST00000553619 C11orf95C9JLR9 678 aaPredicted RBP7.33□□□□□ -1.24
VTI1B-202ENST00000553619 AMHR2Q16671 573 aa7.33□□□□□ -1.24
VTI1B-202ENST00000553619 LCE2AQ5TA79 106 aaPredicted RBP7.33□□□□□ -1.24
VTI1B-202ENST00000553619 GIGYF2Q6Y7W6 1299 aaKnown RBP7.33□□□□□ -1.24
VTI1B-202ENST00000553619 AFAP1Q8N556 730 aa7.33□□□□□ -1.24
VTI1B-202ENST00000553619 PTPRKQ15262 1439 aa7.33□□□□□ -1.24
VTI1B-202ENST00000553619 NCOA1Q15788 1441 aa7.33□□□□□ -1.24
VTI1B-202ENST00000553619 C9orf84Q5VXU9 1444 aa7.33□□□□□ -1.24
VTI1B-202ENST00000553619 DENND4BO75064 1496 aaPredicted RBP7.32□□□□□ -1.24
VTI1B-202ENST00000553619 ADGRL2O95490 1459 aa7.32□□□□□ -1.24
VTI1B-202ENST00000553619 TREML4Q6UXN2 200 aa7.32□□□□□ -1.24
VTI1B-202ENST00000553619 TRIM52Q96A61 297 aa7.32□□□□□ -1.24
VTI1B-202ENST00000553619 ATP13A2Q9NQ11 1180 aa7.32□□□□□ -1.24
VTI1B-202ENST00000553619 TSPOAP1O95153 1857 aa7.32□□□□□ -1.24
VTI1B-202ENST00000553619 RAB3GAP2Q9H2M9 1393 aa7.32□□□□□ -1.24
VTI1B-202ENST00000553619 ABCC1P33527 1531 aa7.32□□□□□ -1.24
VTI1B-202ENST00000553619 SYCP2Q9BX26 1530 aa7.32□□□□□ -1.24
VTI1B-202ENST00000553619 ADGBQ8N7X0 1667 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms