RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 AXIN2Q9Y2T1 843 aa17■□□□□ 0.31
SRP54-203ENST00000553544 WDR17Q8IZU2 1322 aa16.99■□□□□ 0.31
SRP54-203ENST00000553544 TXNRD1Q16881 649 aa16.99■□□□□ 0.31
SRP54-203ENST00000553544 ZNF784Q8NCA9 323 aaPredicted RBP16.99■□□□□ 0.31
SRP54-203ENST00000553544 CSB-PGBD3P0DP91 1061 aa16.98■□□□□ 0.31
SRP54-203ENST00000553544 SLC15A2Q16348 729 aa16.98■□□□□ 0.31
SRP54-203ENST00000553544 SYT17Q9BSW7 474 aa16.98■□□□□ 0.31
SRP54-203ENST00000553544 CARD10Q9BWT7 1032 aa16.98■□□□□ 0.31
SRP54-203ENST00000553544 PARP4Q9UKK3 1724 aaKnown RBP16.98■□□□□ 0.31
SRP54-203ENST00000553544 ARHGEF25Q86VW2 580 aa16.97■□□□□ 0.31
SRP54-203ENST00000553544 KCNH5Q8NCM2 988 aa16.97■□□□□ 0.31
SRP54-203ENST00000553544 SIN3AQ96ST3 1273 aa16.97■□□□□ 0.31
SRP54-203ENST00000553544 BCL9O00512 1426 aa16.96■□□□□ 0.31
SRP54-203ENST00000553544 ZNF692Q9BU19 519 aaPredicted RBP16.96■□□□□ 0.31
SRP54-203ENST00000553544 FHDC1Q9C0D6 1143 aaPredicted RBP16.96■□□□□ 0.31
SRP54-203ENST00000553544 TOPAZ1Q8N9V7 1692 aa16.95■□□□□ 0.3
SRP54-203ENST00000553544 L3MBTL2Q969R5 705 aa16.95■□□□□ 0.3
SRP54-203ENST00000553544 MTFR1LQ9H019 292 aa16.95■□□□□ 0.3
SRP54-203ENST00000553544 USP6P35125 1406 aa16.95■□□□□ 0.3
SRP54-203ENST00000553544 PEAK1Q9H792 1746 aa16.93■□□□□ 0.3
SRP54-203ENST00000553544 TRIM26Q12899 539 aaPredicted RBP16.93■□□□□ 0.3
SRP54-203ENST00000553544 EVC2Q86UK5 1308 aa16.93■□□□□ 0.3
SRP54-203ENST00000553544 UTRNP46939 3433 aa16.92■□□□□ 0.3
SRP54-203ENST00000553544 SOX12O15370 315 aa16.92■□□□□ 0.3
SRP54-203ENST00000553544 ARXQ96QS3 562 aa16.91■□□□□ 0.3
SRP54-203ENST00000553544 RGPD3A6NKT7 1758 aaPredicted RBP16.91■□□□□ 0.3
SRP54-203ENST00000553544 RGPD4Q7Z3J3 1758 aa16.91■□□□□ 0.3
SRP54-203ENST00000553544 TTC21BQ7Z4L5 1316 aa16.91■□□□□ 0.3
SRP54-203ENST00000553544 TRPM1Q7Z4N2 1603 aa16.9■□□□□ 0.3
SRP54-203ENST00000553544 SGIP1Q9BQI5 828 aa16.9■□□□□ 0.3
SRP54-203ENST00000553544 SLIT3O75094 1523 aa16.9■□□□□ 0.3
SRP54-203ENST00000553544 SBF2Q86WG5 1849 aa16.89■□□□□ 0.29
SRP54-203ENST00000553544 C1QTNF8P60827 252 aa16.89■□□□□ 0.29
SRP54-203ENST00000553544 NEUROD1Q13562 356 aa16.89■□□□□ 0.29
SRP54-203ENST00000553544 CCDC7Q96M83 1385 aa16.89■□□□□ 0.29
SRP54-203ENST00000553544 CPSF1Q10570 1443 aaKnown RBP16.88■□□□□ 0.29
SRP54-203ENST00000553544 CASZ1Q86V15 1759 aa16.88■□□□□ 0.29
SRP54-203ENST00000553544 SENP3-EIF4A1A0A087X0R7 540 aa16.88■□□□□ 0.29
SRP54-203ENST00000553544 TTC21AQ8NDW8 1320 aa16.88■□□□□ 0.29
SRP54-203ENST00000553544 ACSBG1Q96GR2 724 aa16.87■□□□□ 0.29
SRP54-203ENST00000553544 LRRC37A3O60309 1634 aa16.87■□□□□ 0.29
SRP54-203ENST00000553544 QRICH2Q9H0J4 1663 aa16.86■□□□□ 0.29
SRP54-203ENST00000553544 GPR162Q16538 588 aa16.86■□□□□ 0.29
SRP54-203ENST00000553544 COL18A1P39060 1754 aa16.85■□□□□ 0.29
SRP54-203ENST00000553544 NLRP2Q9NX02 1062 aa16.85■□□□□ 0.29
SRP54-203ENST00000553544 IL2RBP14784 551 aa16.83■□□□□ 0.28
SRP54-203ENST00000553544 MYOM1P52179 1685 aa16.83■□□□□ 0.28
SRP54-203ENST00000553544 SLC16A10Q8TF71 515 aa16.83■□□□□ 0.28
SRP54-203ENST00000553544 KTN1Q86UP2 1357 aaKnown RBP16.81■□□□□ 0.28
SRP54-203ENST00000553544 MAP3K5Q99683 1374 aa16.81■□□□□ 0.28
SRP54-203ENST00000553544 POLD1P28340 1107 aa16.8■□□□□ 0.28
SRP54-203ENST00000553544 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.8■□□□□ 0.28
SRP54-203ENST00000553544 LRRC4BQ9NT99 713 aa16.8■□□□□ 0.28
SRP54-203ENST00000553544 TNS2Q63HR2 1409 aa16.79■□□□□ 0.28
SRP54-203ENST00000553544 PIK3C2AO00443 1686 aa16.79■□□□□ 0.28
SRP54-203ENST00000553544 ZNF827Q17R98 1081 aa16.79■□□□□ 0.28
SRP54-203ENST00000553544 SLC27A3Q5K4L6 730 aa16.79■□□□□ 0.28
SRP54-203ENST00000553544 ERBB3P21860 1342 aa16.78■□□□□ 0.28
SRP54-203ENST00000553544 KLHL34Q8N239 644 aa16.78■□□□□ 0.28
SRP54-203ENST00000553544 ANKRD24Q8TF21 1146 aa16.78■□□□□ 0.28
SRP54-203ENST00000553544 AKAP12Q02952 1782 aa16.78■□□□□ 0.28
SRP54-203ENST00000553544 ROCK2O75116 1388 aaKnown RBP16.77■□□□□ 0.28
SRP54-203ENST00000553544 GIGYF1O75420 1035 aaPredicted RBP16.77■□□□□ 0.28
SRP54-203ENST00000553544 PELP1Q8IZL8 1130 aaKnown RBP16.77■□□□□ 0.28
SRP54-203ENST00000553544 AKT1S1Q96B36 256 aa16.77■□□□□ 0.28
SRP54-203ENST00000553544 DDX54Q8TDD1 881 aaKnown RBP16.76■□□□□ 0.27
SRP54-203ENST00000553544 TFCP2L1Q9NZI6 479 aa16.76■□□□□ 0.27
SRP54-203ENST00000553544 USP31Q70CQ4 1352 aa16.76■□□□□ 0.27
SRP54-203ENST00000553544 CHD4Q14839 1912 aa16.75■□□□□ 0.27
SRP54-203ENST00000553544 NME9Q86XW9 330 aa16.75■□□□□ 0.27
SRP54-203ENST00000553544 TONSLQ96HA7 1378 aa16.75■□□□□ 0.27
SRP54-203ENST00000553544 RGPD5Q99666 1765 aa16.74■□□□□ 0.27
SRP54-203ENST00000553544 NFAT5O94916 1531 aa16.74■□□□□ 0.27
SRP54-203ENST00000553544 WNK3Q9BYP7 1800 aa16.73■□□□□ 0.27
SRP54-203ENST00000553544 KAT6BQ8WYB5 2073 aa16.73■□□□□ 0.27
SRP54-203ENST00000553544 HDGFL2Q7Z4V5 671 aaPredicted RBP16.73■□□□□ 0.27
SRP54-203ENST00000553544 TMC1Q8TDI8 760 aa16.73■□□□□ 0.27
SRP54-203ENST00000553544 ABCC6O95255 1503 aa16.73■□□□□ 0.27
SRP54-203ENST00000553544 GRIN3BO60391 1043 aa16.72■□□□□ 0.27
SRP54-203ENST00000553544 IFFO2Q5TF58 517 aa16.72■□□□□ 0.27
SRP54-203ENST00000553544 SYTL4Q96C24 671 aaPredicted RBP16.72■□□□□ 0.27
SRP54-203ENST00000553544 PNPLA7Q6ZV29 1317 aa16.71■□□□□ 0.27
SRP54-203ENST00000553544 PRIM1P49642 420 aaKnown RBP16.71■□□□□ 0.27
SRP54-203ENST00000553544 NHSQ6T4R5 1651 aa16.71■□□□□ 0.27
SRP54-203ENST00000553544 GOLGB1Q14789 3259 aaKnown RBP16.71■□□□□ 0.26
SRP54-203ENST00000553544 KCNQ4P56696 695 aa16.7■□□□□ 0.26
SRP54-203ENST00000553544 IP6K1Q92551 441 aa16.7■□□□□ 0.26
SRP54-203ENST00000553544 SBNO2Q9Y2G9 1366 aa16.69■□□□□ 0.26
SRP54-203ENST00000553544 NLGN2Q8NFZ4 835 aa16.69■□□□□ 0.26
SRP54-203ENST00000553544 LTV1Q96GA3 475 aaPredicted RBP16.69■□□□□ 0.26
SRP54-203ENST00000553544 SLC12A5Q9H2X9 1139 aa16.69■□□□□ 0.26
SRP54-203ENST00000553544 TERF2IPQ9NYB0 399 aa16.69■□□□□ 0.26
SRP54-203ENST00000553544 MSH5O43196 834 aa16.68■□□□□ 0.26
SRP54-203ENST00000553544 CARD11Q9BXL7 1154 aa16.68■□□□□ 0.26
SRP54-203ENST00000553544 CEP350Q5VT06 3117 aa16.68■□□□□ 0.26
SRP54-203ENST00000553544 PAPPAQ13219 1627 aa16.67■□□□□ 0.26
SRP54-203ENST00000553544 ZCRB1Q8TBF4 217 aaKnown RBP16.66■□□□□ 0.26
SRP54-203ENST00000553544 BTAF1O14981 1849 aa16.66■□□□□ 0.26
SRP54-203ENST00000553544 HMGB2P26583 209 aaKnown RBP16.65■□□□□ 0.26
SRP54-203ENST00000553544 CCNL1Q9UK58 526 aaPredicted RBP16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms