RNA–Protein interactions for RNA: ENST00000553335.5

TMEM260-204, Transcript of transmembrane protein 260, humanhuman

TSL 3

Gene TMEM260, Length 560 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-204ENST00000553335 MED1Q15648 1581 aaPredicted RBP13.2□□□□□ -0.3
TMEM260-204ENST00000553335 ABCA3Q99758 1704 aa13.2□□□□□ -0.3
TMEM260-204ENST00000553335 KCNH5Q8NCM2 988 aa13.2□□□□□ -0.3
TMEM260-204ENST00000553335 ZRANB1Q9UGI0 708 aa13.2□□□□□ -0.3
TMEM260-204ENST00000553335 SOCS7O14512 581 aa13.19□□□□□ -0.3
TMEM260-204ENST00000553335 PRKRIP1Q9H875 184 aaPredicted RBP13.19□□□□□ -0.3
TMEM260-204ENST00000553335 LTN1O94822 1766 aa13.19□□□□□ -0.3
TMEM260-204ENST00000553335 PARD3Q8TEW0 1356 aa13.19□□□□□ -0.3
TMEM260-204ENST00000553335 SLIT3O75094 1523 aa13.18□□□□□ -0.3
TMEM260-204ENST00000553335 HAP1P54257 671 aaPredicted RBP13.18□□□□□ -0.3
TMEM260-204ENST00000553335 PNPLA6Q8IY17 1366 aa13.18□□□□□ -0.3
TMEM260-204ENST00000553335 JCADQ9P266 1359 aa13.18□□□□□ -0.3
TMEM260-204ENST00000553335 USP19O94966 1318 aa13.17□□□□□ -0.3
TMEM260-204ENST00000553335 PLEKHG5O94827 1062 aa13.17□□□□□ -0.3
TMEM260-204ENST00000553335 TNNT2P45379 298 aaPredicted RBP13.16□□□□□ -0.3
TMEM260-204ENST00000553335 AATKQ6ZMQ8 1374 aa13.16□□□□□ -0.3
TMEM260-204ENST00000553335 GCP02774 474 aa13.15□□□□□ -0.3
TMEM260-204ENST00000553335 MYBBP1AQ9BQG0 1328 aaKnown RBP13.14□□□□□ -0.31
TMEM260-204ENST00000553335 NFAT5O94916 1531 aa13.14□□□□□ -0.31
TMEM260-204ENST00000553335 SOX12O15370 315 aa13.14□□□□□ -0.31
TMEM260-204ENST00000553335 ECM2O94769 699 aaPredicted RBP13.14□□□□□ -0.31
TMEM260-204ENST00000553335 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
TMEM260-204ENST00000553335 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
TMEM260-204ENST00000553335 SPATA31A6Q5VVP1 1343 aa13.13□□□□□ -0.31
TMEM260-204ENST00000553335 ZBTB47Q9UFB7 747 aaPredicted RBP13.12□□□□□ -0.31
TMEM260-204ENST00000553335 KIF24Q5T7B8 1368 aa13.11□□□□□ -0.31
TMEM260-204ENST00000553335 ZBTB7CA1YPR0 619 aa13.11□□□□□ -0.31
TMEM260-204ENST00000553335 ZC3H6P61129 1189 aaKnown RBP13.11□□□□□ -0.31
TMEM260-204ENST00000553335 RGPD5Q99666 1765 aa13.11□□□□□ -0.31
TMEM260-204ENST00000553335 COL14A1Q05707 1796 aaKnown RBP13.1□□□□□ -0.31
TMEM260-204ENST00000553335 FBLN1P23142 703 aa13.1□□□□□ -0.31
TMEM260-204ENST00000553335 AMPHP49418 695 aa13.1□□□□□ -0.31
TMEM260-204ENST00000553335 RRS1Q15050 365 aaKnown RBP13.1□□□□□ -0.31
TMEM260-204ENST00000553335 CFAP53Q96M91 514 aa13.1□□□□□ -0.31
TMEM260-204ENST00000553335 POLKQ9UBT6 870 aa13.1□□□□□ -0.31
TMEM260-204ENST00000553335 SMG6Q86US8 1419 aaKnown RBP13.1□□□□□ -0.31
TMEM260-204ENST00000553335 PEAK1Q9H792 1746 aa13.1□□□□□ -0.31
TMEM260-204ENST00000553335 RTL1A6NKG5 1358 aa13.09□□□□□ -0.31
TMEM260-204ENST00000553335 CPDO75976 1380 aa13.09□□□□□ -0.31
TMEM260-204ENST00000553335 ABCC6O95255 1503 aa13.09□□□□□ -0.31
TMEM260-204ENST00000553335 NUTM2BA6NNL0 878 aaPredicted RBP13.09□□□□□ -0.31
TMEM260-204ENST00000553335 NUTM2EB1AL46 878 aaPredicted RBP13.09□□□□□ -0.31
TMEM260-204ENST00000553335 PPM1GO15355 546 aaPredicted RBP13.09□□□□□ -0.31
TMEM260-204ENST00000553335 MTHFSP49914 203 aa13.09□□□□□ -0.31
TMEM260-204ENST00000553335 ARHGEF25Q86VW2 580 aa13.09□□□□□ -0.31
TMEM260-204ENST00000553335 NUTM2AQ8IVF1 878 aaPredicted RBP13.09□□□□□ -0.31
TMEM260-204ENST00000553335 EMILIN1Q9Y6C2 1016 aa13.09□□□□□ -0.31
TMEM260-204ENST00000553335 COL18A1P39060 1754 aa13.09□□□□□ -0.31
TMEM260-204ENST00000553335 MAP3K19Q56UN5 1328 aa13.09□□□□□ -0.31
TMEM260-204ENST00000553335 FLT4P35916 1363 aa13.08□□□□□ -0.31
TMEM260-204ENST00000553335 KIAA0232Q92628 1395 aa13.08□□□□□ -0.31
TMEM260-204ENST00000553335 PRDM11Q9NQV5 511 aa13.08□□□□□ -0.32
TMEM260-204ENST00000553335 CDK12Q9NYV4 1490 aaPredicted RBP13.08□□□□□ -0.32
TMEM260-204ENST00000553335 CCER2I3L3R5 266 aa13.07□□□□□ -0.32
TMEM260-204ENST00000553335 HOXC9P31274 260 aa13.07□□□□□ -0.32
TMEM260-204ENST00000553335 IP6K1Q92551 441 aa13.07□□□□□ -0.32
TMEM260-204ENST00000553335 PLCH1Q4KWH8 1693 aa13.07□□□□□ -0.32
TMEM260-204ENST00000553335 BLMP54132 1417 aaPredicted RBP13.06□□□□□ -0.32
TMEM260-204ENST00000553335 LMO7Q8WWI1 1683 aa13.06□□□□□ -0.32
TMEM260-204ENST00000553335 FAM208AQ9UK61 1670 aaKnown RBP13.06□□□□□ -0.32
TMEM260-204ENST00000553335 NWD2Q9ULI1 1742 aa13.06□□□□□ -0.32
TMEM260-204ENST00000553335 ADAMTS2O95450 1211 aa13.06□□□□□ -0.32
TMEM260-204ENST00000553335 MEX3CQ5U5Q3 659 aaKnown RBP13.05□□□□□ -0.32
TMEM260-204ENST00000553335 INSRP06213 1382 aa13.05□□□□□ -0.32
TMEM260-204ENST00000553335 LRP6O75581 1613 aa13.04□□□□□ -0.32
TMEM260-204ENST00000553335 CHRNA2Q15822 529 aa13.04□□□□□ -0.32
TMEM260-204ENST00000553335 MRS2Q9HD23 443 aa13.04□□□□□ -0.32
TMEM260-204ENST00000553335 RGPD2P0DJD1 1756 aa13.03□□□□□ -0.32
TMEM260-204ENST00000553335 FAM83GA6ND36 823 aa13.03□□□□□ -0.32
TMEM260-204ENST00000553335 DIAPH1O60610 1272 aaKnown RBP13.03□□□□□ -0.32
TMEM260-204ENST00000553335 HSP90AB2PQ58FF8 381 aa13.03□□□□□ -0.32
TMEM260-204ENST00000553335 NUDCQ9Y266 331 aa13.03□□□□□ -0.32
TMEM260-204ENST00000553335 COL3A1P02461 1466 aaPredicted RBP13.02□□□□□ -0.33
TMEM260-204ENST00000553335 CAMTA1Q9Y6Y1 1673 aa13.02□□□□□ -0.33
TMEM260-204ENST00000553335 NRAPQ86VF7 1730 aa13.02□□□□□ -0.33
TMEM260-204ENST00000553335 EVA1CP58658 441 aa13.01□□□□□ -0.33
TMEM260-204ENST00000553335 ANKRD24Q8TF21 1146 aa13.01□□□□□ -0.33
TMEM260-204ENST00000553335 NGLY1Q96IV0 654 aa13.01□□□□□ -0.33
TMEM260-204ENST00000553335 C8orf37Q96NL8 207 aa13.01□□□□□ -0.33
TMEM260-204ENST00000553335 RBM42Q9BTD8 480 aaKnown RBP13.01□□□□□ -0.33
TMEM260-204ENST00000553335 BTG4Q9NY30 223 aa13.01□□□□□ -0.33
TMEM260-204ENST00000553335 RGS17Q9UGC6 210 aaPredicted RBP13.01□□□□□ -0.33
TMEM260-204ENST00000553335 AXIN2Q9Y2T1 843 aa13.01□□□□□ -0.33
TMEM260-204ENST00000553335 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.01□□□□□ -0.33
TMEM260-204ENST00000553335 COL5A2P05997 1499 aaPredicted RBP13□□□□□ -0.33
TMEM260-204ENST00000553335 CSB-PGBD3P0DP91 1061 aa13□□□□□ -0.33
TMEM260-204ENST00000553335 EIF4A2Q14240 407 aaKnown RBP13□□□□□ -0.33
TMEM260-204ENST00000553335 WDR43Q15061 677 aaKnown RBP eCLIP13□□□□□ -0.33
TMEM260-204ENST00000553335 CCDC184Q52MB2 194 aa13□□□□□ -0.33
TMEM260-204ENST00000553335 LTV1Q96GA3 475 aaPredicted RBP13□□□□□ -0.33
TMEM260-204ENST00000553335 CIZ1Q9ULV3 898 aaPredicted RBP13□□□□□ -0.33
TMEM260-204ENST00000553335 RGPD1P0DJD0 1748 aa12.99□□□□□ -0.33
TMEM260-204ENST00000553335 SLIT2O94813 1529 aa12.99□□□□□ -0.33
TMEM260-204ENST00000553335 ERBB3P21860 1342 aa12.99□□□□□ -0.33
TMEM260-204ENST00000553335 U2SURPO15042 1029 aaKnown RBP12.99□□□□□ -0.33
TMEM260-204ENST00000553335 RGL2O15211 777 aa12.99□□□□□ -0.33
TMEM260-204ENST00000553335 IL13P35225 146 aa12.99□□□□□ -0.33
TMEM260-204ENST00000553335 BBXQ8WY36 941 aaPredicted RBP12.99□□□□□ -0.33
TMEM260-204ENST00000553335 STRN4Q9NRL3 753 aa12.99□□□□□ -0.33
TMEM260-204ENST00000553335 WDR17Q8IZU2 1322 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms