RNA–Protein interactions for RNA: ENST00000553289.5

SYNE2-208, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,261 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-208	ENST00000553289	TTC39A	Q5SRH9	613 aa		13.74	□□□□□ -0.21
SYNE2-208	ENST00000553289	PDILT	Q8N807	584 aa		13.74	□□□□□ -0.21
SYNE2-208	ENST00000553289	R3HCC1	Q9Y3T6	440 aa	Known RBP	13.74	□□□□□ -0.21
SYNE2-208	ENST00000553289	CCDC192	P0DO97	292 aa		13.74	□□□□□ -0.21
SYNE2-208	ENST00000553289	ZSCAN31	Q96LW9	406 aa	Predicted RBP	13.74	□□□□□ -0.21
SYNE2-208	ENST00000553289	DNMBP	Q6XZF7	1577 aa		13.74	□□□□□ -0.21
SYNE2-208	ENST00000553289	NOM1	Q5C9Z4	860 aa	Known RBP	13.73	□□□□□ -0.21
SYNE2-208	ENST00000553289	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.73	□□□□□ -0.21
SYNE2-208	ENST00000553289	ZSCAN25	Q6NSZ9	544 aa		13.73	□□□□□ -0.21
SYNE2-208	ENST00000553289	SPG7	Q9UQ90	795 aa		13.73	□□□□□ -0.21
SYNE2-208	ENST00000553289	MYO6	Q9UM54	1294 aa		13.73	□□□□□ -0.21
SYNE2-208	ENST00000553289	DACH1	Q9UI36	760 aa		13.73	□□□□□ -0.21
SYNE2-208	ENST00000553289	NAIP	Q13075	1403 aa		13.73	□□□□□ -0.21
SYNE2-208	ENST00000553289	NACAP1	Q9BZK3	213 aa		13.72	□□□□□ -0.21
SYNE2-208	ENST00000553289	KRT85	P78386	507 aa		13.72	□□□□□ -0.21
SYNE2-208	ENST00000553289	FYB1	O15117	783 aa		13.72	□□□□□ -0.21
SYNE2-208	ENST00000553289	FIBP	O43427	364 aa		13.72	□□□□□ -0.21
SYNE2-208	ENST00000553289	SMC2	O95347	1197 aa		13.72	□□□□□ -0.21
SYNE2-208	ENST00000553289	SLFN5	Q08AF3	891 aa		13.72	□□□□□ -0.21
SYNE2-208	ENST00000553289	MAGEC2	Q9UBF1	373 aa	Predicted RBP	13.72	□□□□□ -0.21
SYNE2-208	ENST00000553289	WDR97	A6NE52	1622 aa		13.72	□□□□□ -0.21
SYNE2-208	ENST00000553289	ZNF530	Q6P9A1	599 aa	Predicted RBP	13.71	□□□□□ -0.21
SYNE2-208	ENST00000553289	PROSER2	Q86WR7	435 aa	Predicted RBP	13.71	□□□□□ -0.21
SYNE2-208	ENST00000553289	EPRS	P07814	1512 aa	Known RBP	13.71	□□□□□ -0.21
SYNE2-208	ENST00000553289	KIAA0586	Q9BVV6	1533 aa		13.71	□□□□□ -0.21
SYNE2-208	ENST00000553289	KRT32	Q14532	448 aa		13.71	□□□□□ -0.21
SYNE2-208	ENST00000553289	TRIM22	Q8IYM9	498 aa		13.71	□□□□□ -0.21
SYNE2-208	ENST00000553289	CNNM1	Q9NRU3	951 aa		13.71	□□□□□ -0.21
SYNE2-208	ENST00000553289	ABCC11	Q96J66	1382 aa		13.71	□□□□□ -0.21
SYNE2-208	ENST00000553289	SNAPC4	Q5SXM2	1469 aa		13.71	□□□□□ -0.22
SYNE2-208	ENST00000553289	RDX	P35241	583 aa	Known RBP	13.71	□□□□□ -0.22
SYNE2-208	ENST00000553289	NFE2L2	Q16236	605 aa		13.71	□□□□□ -0.22
SYNE2-208	ENST00000553289	ODF2	Q5BJF6	829 aa		13.7	□□□□□ -0.22
SYNE2-208	ENST00000553289	CAGE1	Q8TC20	777 aa		13.7	□□□□□ -0.22
SYNE2-208	ENST00000553289	CDK5RAP3	Q96JB5	506 aa		13.7	□□□□□ -0.22
SYNE2-208	ENST00000553289	MAP3K1	Q13233	1512 aa		13.7	□□□□□ -0.22
SYNE2-208	ENST00000553289	CABP4	P57796	275 aa		13.7	□□□□□ -0.22
SYNE2-208	ENST00000553289	CTNNA3	Q9UI47	895 aa		13.7	□□□□□ -0.22
SYNE2-208	ENST00000553289	CDKL5	O76039	1030 aa		13.69	□□□□□ -0.22
SYNE2-208	ENST00000553289	NSD3	Q9BZ95	1437 aa		13.69	□□□□□ -0.22
SYNE2-208	ENST00000553289	CWC15	Q9P013	229 aa	Known RBP	13.69	□□□□□ -0.22
SYNE2-208	ENST00000553289	TNMD	Q9H2S6	317 aa		13.69	□□□□□ -0.22
SYNE2-208	ENST00000553289	BLOC1S2	Q6QNY1	142 aa		13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	TXLNB	Q8N3L3	684 aa		13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	PPP6R1	Q9UPN7	881 aa		13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	CC2D2A	Q9P2K1	1620 aa		13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	RBM42	Q9BTD8	480 aa	Known RBP	13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	TMPO	P42166	694 aa	Known RBP	13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	DCTN1	Q14203	1278 aa		13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	ALDH1L2	Q3SY69	923 aa		13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	CFAP45	Q9UL16	551 aa		13.68	□□□□□ -0.22
SYNE2-208	ENST00000553289	CCAR1	Q8IX12	1150 aa	Known RBP	13.67	□□□□□ -0.22
SYNE2-208	ENST00000553289	POGZ	Q7Z3K3	1410 aa		13.67	□□□□□ -0.22
SYNE2-208	ENST00000553289	CBFA2T2	O43439	604 aa		13.67	□□□□□ -0.22
SYNE2-208	ENST00000553289	LARP1B	Q659C4	914 aa	Known RBP	13.67	□□□□□ -0.22
SYNE2-208	ENST00000553289	LUC7L	Q9NQ29	371 aa	Known RBP	13.67	□□□□□ -0.22
SYNE2-208	ENST00000553289	ZNHIT6	Q9NWK9	470 aa	Known RBP	13.67	□□□□□ -0.22
SYNE2-208	ENST00000553289	STIM1	Q13586	685 aa		13.67	□□□□□ -0.22
SYNE2-208	ENST00000553289	GRPEL1	Q9HAV7	217 aa		13.67	□□□□□ -0.22
SYNE2-208	ENST00000553289	SRGAP3	O43295	1099 aa		13.66	□□□□□ -0.22
SYNE2-208	ENST00000553289	CCDC57	Q2TAC2	916 aa		13.66	□□□□□ -0.22
SYNE2-208	ENST00000553289	IK	Q13123	557 aa	Predicted RBP	13.66	□□□□□ -0.22
SYNE2-208	ENST00000553289	RRP12	Q5JTH9	1297 aa	Known RBP	13.66	□□□□□ -0.22
SYNE2-208	ENST00000553289	PDRG1	Q9NUG6	133 aa		13.66	□□□□□ -0.22
SYNE2-208	ENST00000553289	NOL7	Q9UMY1	257 aa	Known RBP	13.66	□□□□□ -0.22
SYNE2-208	ENST00000553289	CCDC69	A6NI79	296 aa		13.66	□□□□□ -0.22
SYNE2-208	ENST00000553289	ABCA10	Q8WWZ4	1543 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	NES	P48681	1621 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	AACS	Q86V21	672 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	CCDC61	Q9Y6R9	512 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	IQGAP2	Q13576	1575 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	ATP2B1	P20020	1258 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	MCM4	P33991	863 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	ME1	P48163	572 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	RAB11FIP3	O75154	756 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	SERPINC1	P01008	464 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	FMNL2	Q96PY5	1086 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	CUL7	Q14999	1698 aa		13.65	□□□□□ -0.22
SYNE2-208	ENST00000553289	CCDC66	A2RUB6	948 aa		13.64	□□□□□ -0.23
SYNE2-208	ENST00000553289	HSP90AB2P	Q58FF8	381 aa		13.64	□□□□□ -0.23
SYNE2-208	ENST00000553289	PPFIBP1	Q86W92	1011 aa		13.64	□□□□□ -0.23
SYNE2-208	ENST00000553289	KCNH5	Q8NCM2	988 aa		13.64	□□□□□ -0.23
SYNE2-208	ENST00000553289	CEP126	Q9P2H0	1117 aa		13.64	□□□□□ -0.23
SYNE2-208	ENST00000553289	MAGI1	Q96QZ7	1491 aa	Predicted RBP	13.64	□□□□□ -0.23
SYNE2-208	ENST00000553289	BTBD11	A6QL63	1104 aa		13.64	□□□□□ -0.23
SYNE2-208	ENST00000553289	WASF1	Q92558	559 aa		13.64	□□□□□ -0.23
SYNE2-208	ENST00000553289	GNAT3	A8MTJ3	354 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	ANKLE2	Q86XL3	938 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	NKTR	P30414	1462 aa	Known RBP	13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	CDK13	Q14004	1512 aa	Known RBP	13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	CEP57L1	Q8IYX8	460 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	SPATA32	Q96LK8	384 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	SIL1	Q9H173	461 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	PTPN23	Q9H3S7	1636 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	TOM1L2	Q6ZVM7	507 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	TMEM57	Q8N5G2	664 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	CAMSAP2	Q08AD1	1489 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	KRT18	P05783	430 aa	Known RBP	13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	KIF1BP	Q96EK5	621 aa		13.63	□□□□□ -0.23
SYNE2-208	ENST00000553289	MPHOSPH8	Q99549	860 aa		13.63	□□□□□ -0.23

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