RNA–Protein interactions for RNA: ENST00000552433.1

LETMD1-233, Transcript of LETM1 domain containing 1, human

TSL 2

Gene LETMD1, Length 727 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LETMD1-233	ENST00000552433	SOBP	A7XYQ1	873 aa		11.56	□□□□□ -0.56
LETMD1-233	ENST00000552433	TMEM259	Q4ZIN3	620 aa		11.55	□□□□□ -0.56
LETMD1-233	ENST00000552433	CCDC116	Q8IYX3	515 aa		11.55	□□□□□ -0.56
LETMD1-233	ENST00000552433	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.55	□□□□□ -0.56
LETMD1-233	ENST00000552433	ADAM32	Q8TC27	787 aa		11.54	□□□□□ -0.56
LETMD1-233	ENST00000552433	SLC10A4	Q96EP9	437 aa		11.54	□□□□□ -0.56
LETMD1-233	ENST00000552433	KCTD15	Q96SI1	283 aa	Predicted RBP	11.54	□□□□□ -0.56
LETMD1-233	ENST00000552433	VEGFB	P49765	207 aa		11.53	□□□□□ -0.56
LETMD1-233	ENST00000552433	LCE2C	Q5TA81	110 aa		11.53	□□□□□ -0.56
LETMD1-233	ENST00000552433	TRIM34	Q9BYJ4	488 aa		11.53	□□□□□ -0.56
LETMD1-233	ENST00000552433	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	11.52	□□□□□ -0.57
LETMD1-233	ENST00000552433	EMILIN1	Q9Y6C2	1016 aa		11.52	□□□□□ -0.57
LETMD1-233	ENST00000552433	BMP2	P12643	396 aa		11.51	□□□□□ -0.57
LETMD1-233	ENST00000552433	NXF1	Q9UBU9	619 aa	Known RBP	11.51	□□□□□ -0.57
LETMD1-233	ENST00000552433	CBLB	Q13191	982 aa		11.5	□□□□□ -0.57
LETMD1-233	ENST00000552433	PNMA1	Q8ND90	353 aa		11.5	□□□□□ -0.57
LETMD1-233	ENST00000552433	GPSM3	Q9Y4H4	160 aa		11.5	□□□□□ -0.57
LETMD1-233	ENST00000552433	RAB15	P59190	212 aa		11.49	□□□□□ -0.57
LETMD1-233	ENST00000552433	LINC00528	Q8N1L1	170 aa		11.49	□□□□□ -0.57
LETMD1-233	ENST00000552433	MEIOB	Q8N635	442 aa		11.49	□□□□□ -0.57
LETMD1-233	ENST00000552433	UPP2	O95045	317 aa		11.48	□□□□□ -0.57
LETMD1-233	ENST00000552433	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11.47	□□□□□ -0.57
LETMD1-233	ENST00000552433	PRKCSH	P14314	528 aa	Predicted RBP	11.47	□□□□□ -0.57
LETMD1-233	ENST00000552433	INTS6L	Q5JSJ4	861 aa	Known RBP	11.47	□□□□□ -0.57
LETMD1-233	ENST00000552433	DZIP3	Q86Y13	1208 aa	Known RBP	11.47	□□□□□ -0.57
LETMD1-233	ENST00000552433	GJD4	Q96KN9	370 aa	Predicted RBP	11.47	□□□□□ -0.57
LETMD1-233	ENST00000552433	CDV3	Q9UKY7	258 aa	Known RBP	11.47	□□□□□ -0.57
LETMD1-233	ENST00000552433	PGPEP1	Q9NXJ5	209 aa		11.46	□□□□□ -0.57
LETMD1-233	ENST00000552433	MAN1A2	O60476	641 aa		11.45	□□□□□ -0.58
LETMD1-233	ENST00000552433	SLC16A10	Q8TF71	515 aa		11.45	□□□□□ -0.58
LETMD1-233	ENST00000552433	TMPRSS4	Q9NRS4	437 aa		11.45	□□□□□ -0.58
LETMD1-233	ENST00000552433	TSEN34	Q9BSV6	310 aa	Known RBP	11.44	□□□□□ -0.58
LETMD1-233	ENST00000552433	DHX9	Q08211	1270 aa	Known RBP	11.42	□□□□□ -0.58
LETMD1-233	ENST00000552433	AGBL1	Q96MI9	1066 aa		11.42	□□□□□ -0.58
LETMD1-233	ENST00000552433	SNRK	Q9NRH2	765 aa		11.42	□□□□□ -0.58
LETMD1-233	ENST00000552433	SOS2	Q07890	1332 aa	Predicted RBP	11.41	□□□□□ -0.58
LETMD1-233	ENST00000552433	NBPF20	Q3BBV1	942 aa		11.41	□□□□□ -0.58
LETMD1-233	ENST00000552433		Q6ZVU0	165 aa		11.41	□□□□□ -0.58
LETMD1-233	ENST00000552433	FIGNL2	A6NMB9	653 aa		11.4	□□□□□ -0.58
LETMD1-233	ENST00000552433	ZBBX	A8MT70	800 aa		11.4	□□□□□ -0.58
LETMD1-233	ENST00000552433	FBXO45	P0C2W1	286 aa		11.4	□□□□□ -0.58
LETMD1-233	ENST00000552433	DNMT3L	Q9UJW3	386 aa		11.4	□□□□□ -0.58
LETMD1-233	ENST00000552433		H3BM21	787 aa		11.39	□□□□□ -0.59
LETMD1-233	ENST00000552433	ERVH48-1	M5A8F1	160 aa		11.39	□□□□□ -0.59
LETMD1-233	ENST00000552433	WIPF1	O43516	503 aa		11.39	□□□□□ -0.59
LETMD1-233	ENST00000552433	MTMR14	Q8NCE2	650 aa		11.39	□□□□□ -0.59
LETMD1-233	ENST00000552433	PCDHB9	Q9Y5E1	797 aa		11.39	□□□□□ -0.59
LETMD1-233	ENST00000552433	ERBB4	Q15303	1308 aa		11.38	□□□□□ -0.59
LETMD1-233	ENST00000552433	GMPR	P36959	345 aa		11.38	□□□□□ -0.59
LETMD1-233	ENST00000552433	RELB	Q01201	579 aa		11.38	□□□□□ -0.59
LETMD1-233	ENST00000552433	NPAS3	Q8IXF0	933 aa		11.38	□□□□□ -0.59
LETMD1-233	ENST00000552433	ZNF784	Q8NCA9	323 aa	Predicted RBP	11.38	□□□□□ -0.59
LETMD1-233	ENST00000552433	BANK1	Q8NDB2	785 aa		11.38	□□□□□ -0.59
LETMD1-233	ENST00000552433	TTLL8	A6PVC2	850 aa		11.37	□□□□□ -0.59
LETMD1-233	ENST00000552433	ADD1	P35611	737 aa	Known RBP	11.37	□□□□□ -0.59
LETMD1-233	ENST00000552433	IRF7	Q92985	503 aa		11.37	□□□□□ -0.59
LETMD1-233	ENST00000552433	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.37	□□□□□ -0.59
LETMD1-233	ENST00000552433	GIGYF1	O75420	1035 aa	Predicted RBP	11.36	□□□□□ -0.59
LETMD1-233	ENST00000552433	ESPN	B1AK53	854 aa		11.35	□□□□□ -0.59
LETMD1-233	ENST00000552433	SPINT1	O43278	529 aa		11.35	□□□□□ -0.59
LETMD1-233	ENST00000552433	INSM2	Q96T92	566 aa	Predicted RBP	11.34	□□□□□ -0.59
LETMD1-233	ENST00000552433	LILRA1	O75019	489 aa		11.33	□□□□□ -0.6
LETMD1-233	ENST00000552433	PPFIA3	O75145	1194 aa		11.33	□□□□□ -0.6
LETMD1-233	ENST00000552433	CTSO	P43234	321 aa	Predicted RBP	11.33	□□□□□ -0.6
LETMD1-233	ENST00000552433	CYLD	Q9NQC7	956 aa		11.33	□□□□□ -0.6
LETMD1-233	ENST00000552433	GPR37L1	O60883	481 aa		11.32	□□□□□ -0.6
LETMD1-233	ENST00000552433	INSM1	Q01101	510 aa	Predicted RBP	11.32	□□□□□ -0.6
LETMD1-233	ENST00000552433	NDUFB9	Q9Y6M9	179 aa		11.32	□□□□□ -0.6
LETMD1-233	ENST00000552433	NR1H3	Q13133	447 aa		11.31	□□□□□ -0.6
LETMD1-233	ENST00000552433	ZNF800	Q2TB10	664 aa	Predicted RBP eCLIP	11.31	□□□□□ -0.6
LETMD1-233	ENST00000552433	KDF1	Q8NAX2	398 aa	Predicted RBP	11.3	□□□□□ -0.6
LETMD1-233	ENST00000552433	POLM	Q9NP87	494 aa	Predicted RBP	11.3	□□□□□ -0.6
LETMD1-233	ENST00000552433	ADH1A	P07327	375 aa		11.29	□□□□□ -0.6
LETMD1-233	ENST00000552433	PTS	Q03393	145 aa		11.29	□□□□□ -0.6
LETMD1-233	ENST00000552433	SEPT12	Q8IYM1	358 aa		11.28	□□□□□ -0.6
LETMD1-233	ENST00000552433	PTGIR	P43119	386 aa		11.27	□□□□□ -0.61
LETMD1-233	ENST00000552433	TBC1D2B	Q9UPU7	963 aa		11.26	□□□□□ -0.61
LETMD1-233	ENST00000552433	SOCS7	O14512	581 aa		11.24	□□□□□ -0.61
LETMD1-233	ENST00000552433	RNF217	Q8TC41	542 aa		11.24	□□□□□ -0.61
LETMD1-233	ENST00000552433	STK17A	Q9UEE5	414 aa		11.24	□□□□□ -0.61
LETMD1-233	ENST00000552433	APBB1	O00213	710 aa		11.23	□□□□□ -0.61
LETMD1-233	ENST00000552433	CCDC155	Q8N6L0	562 aa		11.23	□□□□□ -0.61
LETMD1-233	ENST00000552433	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.23	□□□□□ -0.61
LETMD1-233	ENST00000552433	VSIG8	P0DPA2	414 aa		11.22	□□□□□ -0.61
LETMD1-233	ENST00000552433	LOR	P23490	312 aa	Predicted RBP	11.22	□□□□□ -0.61
LETMD1-233	ENST00000552433	RNF20	Q5VTR2	975 aa		11.22	□□□□□ -0.61
LETMD1-233	ENST00000552433	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.22	□□□□□ -0.61
LETMD1-233	ENST00000552433	GPR161	Q8N6U8	529 aa	Known RBP	11.22	□□□□□ -0.61
LETMD1-233	ENST00000552433	ATP5J2-PTCD1	G3V325	749 aa		11.21	□□□□□ -0.61
LETMD1-233	ENST00000552433	SCTR	P47872	440 aa		11.21	□□□□□ -0.61
LETMD1-233	ENST00000552433	MCCD1	P59942	119 aa	Predicted RBP	11.21	□□□□□ -0.61
LETMD1-233	ENST00000552433	ZSCAN1	Q8NBB4	408 aa		11.21	□□□□□ -0.61
LETMD1-233	ENST00000552433	PCDHB11	Q9Y5F2	797 aa		11.21	□□□□□ -0.61
LETMD1-233	ENST00000552433	SLC35F4	A4IF30	521 aa		11.2	□□□□□ -0.62
LETMD1-233	ENST00000552433	MEN1	O00255	615 aa		11.19	□□□□□ -0.62
LETMD1-233	ENST00000552433	ERVK-9	P63128	1117 aa		11.19	□□□□□ -0.62
LETMD1-233	ENST00000552433	CC2D2B	Q6DHV5	1058 aa		11.19	□□□□□ -0.62
LETMD1-233	ENST00000552433	PRICKLE2	Q7Z3G6	844 aa		11.19	□□□□□ -0.62
LETMD1-233	ENST00000552433	IRF5	Q13568	498 aa		11.18	□□□□□ -0.62
LETMD1-233	ENST00000552433	CEP126	Q9P2H0	1117 aa		11.18	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 98 ms