RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 FAM208AQ9UK61 1670 aaKnown RBP12.88□□□□□ -0.35
LIMA1-211ENST00000552338 COL14A1Q05707 1796 aaKnown RBP12.88□□□□□ -0.35
LIMA1-211ENST00000552338 CAMTA1Q9Y6Y1 1673 aa12.87□□□□□ -0.35
LIMA1-211ENST00000552338 HSPA1LP34931 641 aa12.87□□□□□ -0.35
LIMA1-211ENST00000552338 TNNT2P45379 298 aaPredicted RBP12.87□□□□□ -0.35
LIMA1-211ENST00000552338 NCAPD2Q15021 1401 aa12.87□□□□□ -0.35
LIMA1-211ENST00000552338 NWD2Q9ULI1 1742 aa12.86□□□□□ -0.35
LIMA1-211ENST00000552338 IL13P35225 146 aa12.86□□□□□ -0.35
LIMA1-211ENST00000552338 CABLES1Q8TDN4 633 aa12.86□□□□□ -0.35
LIMA1-211ENST00000552338 MRS2Q9HD23 443 aa12.86□□□□□ -0.35
LIMA1-211ENST00000552338 KIAA0232Q92628 1395 aa12.85□□□□□ -0.35
LIMA1-211ENST00000552338 PLEKHG2Q9H7P9 1386 aa12.84□□□□□ -0.35
LIMA1-211ENST00000552338 DIAPH1O60610 1272 aaKnown RBP12.84□□□□□ -0.35
LIMA1-211ENST00000552338 AMPHP49418 695 aa12.84□□□□□ -0.35
LIMA1-211ENST00000552338 CNGB1Q14028 1251 aaPredicted RBP12.84□□□□□ -0.35
LIMA1-211ENST00000552338 HSP90AB2PQ58FF8 381 aa12.84□□□□□ -0.35
LIMA1-211ENST00000552338 ZC3H6P61129 1189 aaKnown RBP12.83□□□□□ -0.36
LIMA1-211ENST00000552338 EIF4A2Q14240 407 aaKnown RBP12.83□□□□□ -0.36
LIMA1-211ENST00000552338 NUDCQ9Y266 331 aa12.83□□□□□ -0.36
LIMA1-211ENST00000552338 AXIN2Q9Y2T1 843 aa12.83□□□□□ -0.36
LIMA1-211ENST00000552338 SLIT2O94813 1529 aa12.83□□□□□ -0.36
LIMA1-211ENST00000552338 KDRP35968 1356 aa12.82□□□□□ -0.36
LIMA1-211ENST00000552338 FAM83GA6ND36 823 aa12.82□□□□□ -0.36
LIMA1-211ENST00000552338 NCBP3Q53F19 620 aaKnown RBP12.82□□□□□ -0.36
LIMA1-211ENST00000552338 ERBB3P21860 1342 aa12.82□□□□□ -0.36
LIMA1-211ENST00000552338 NRAPQ86VF7 1730 aa12.82□□□□□ -0.36
LIMA1-211ENST00000552338 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.82□□□□□ -0.36
LIMA1-211ENST00000552338 RGPD2P0DJD1 1756 aa12.81□□□□□ -0.36
LIMA1-211ENST00000552338 PLCH1Q4KWH8 1693 aa12.81□□□□□ -0.36
LIMA1-211ENST00000552338 COL5A2P05997 1499 aaPredicted RBP12.81□□□□□ -0.36
LIMA1-211ENST00000552338 IGSF1Q8N6C5 1336 aa12.81□□□□□ -0.36
LIMA1-211ENST00000552338 FCHSD2O94868 740 aa12.8□□□□□ -0.36
LIMA1-211ENST00000552338 FNBP4Q8N3X1 1017 aaPredicted RBP12.8□□□□□ -0.36
LIMA1-211ENST00000552338 PRDM11Q9NQV5 511 aa12.8□□□□□ -0.36
LIMA1-211ENST00000552338 LRP6O75581 1613 aa12.8□□□□□ -0.36
LIMA1-211ENST00000552338 PPM1GO15355 546 aaPredicted RBP12.79□□□□□ -0.36
LIMA1-211ENST00000552338 SOX12O15370 315 aa12.79□□□□□ -0.36
LIMA1-211ENST00000552338 EYA1Q99502 592 aa12.79□□□□□ -0.36
LIMA1-211ENST00000552338 ADAMTS8Q9UP79 889 aa12.79□□□□□ -0.36
LIMA1-211ENST00000552338 HAP1P54257 671 aaPredicted RBP12.78□□□□□ -0.36
LIMA1-211ENST00000552338 ANKRD24Q8TF21 1146 aa12.78□□□□□ -0.36
LIMA1-211ENST00000552338 PLEKHF1Q96S99 279 aa12.78□□□□□ -0.36
LIMA1-211ENST00000552338 PNNQ9H307 717 aaKnown RBP12.78□□□□□ -0.36
LIMA1-211ENST00000552338 WDR17Q8IZU2 1322 aa12.78□□□□□ -0.36
LIMA1-211ENST00000552338 WDR43Q15061 677 aaKnown RBP eCLIP12.77□□□□□ -0.37
LIMA1-211ENST00000552338 NGEFQ8N5V2 710 aa12.77□□□□□ -0.37
LIMA1-211ENST00000552338 CHRNA2Q15822 529 aa12.76□□□□□ -0.37
LIMA1-211ENST00000552338 RSPH6AQ9H0K4 717 aa12.76□□□□□ -0.37
LIMA1-211ENST00000552338 NBPF6Q5VWK0 638 aa12.75□□□□□ -0.37
LIMA1-211ENST00000552338 BCL9LQ86UU0 1499 aa12.75□□□□□ -0.37
LIMA1-211ENST00000552338 NBPF4Q96M43 638 aa12.75□□□□□ -0.37
LIMA1-211ENST00000552338 CARD10Q9BWT7 1032 aa12.75□□□□□ -0.37
LIMA1-211ENST00000552338 CRB1P82279 1406 aa12.74□□□□□ -0.37
LIMA1-211ENST00000552338 U2AF1L5P0DN76 240 aaPredicted RBP12.74□□□□□ -0.37
LIMA1-211ENST00000552338 U2AF1Q01081 240 aaKnown RBP eCLIP12.74□□□□□ -0.37
LIMA1-211ENST00000552338 FAM9BQ8IZU0 186 aa12.74□□□□□ -0.37
LIMA1-211ENST00000552338 RUNDC1Q96C34 613 aa12.74□□□□□ -0.37
LIMA1-211ENST00000552338 BTG4Q9NY30 223 aa12.74□□□□□ -0.37
LIMA1-211ENST00000552338 WNK3Q9BYP7 1800 aa12.74□□□□□ -0.37
LIMA1-211ENST00000552338 UNC5CLQ8IV45 518 aa12.73□□□□□ -0.37
LIMA1-211ENST00000552338 THRAP3Q9Y2W1 955 aaKnown RBP12.73□□□□□ -0.37
LIMA1-211ENST00000552338 DLG5Q8TDM6 1919 aa12.72□□□□□ -0.37
LIMA1-211ENST00000552338 PKD1L3Q7Z443 1732 aa12.72□□□□□ -0.37
LIMA1-211ENST00000552338 NUTM2BA6NNL0 878 aaPredicted RBP12.72□□□□□ -0.37
LIMA1-211ENST00000552338 NUTM2EB1AL46 878 aaPredicted RBP12.72□□□□□ -0.37
LIMA1-211ENST00000552338 U2SURPO15042 1029 aaKnown RBP12.72□□□□□ -0.37
LIMA1-211ENST00000552338 SULT6B1Q6IMI4 303 aa12.72□□□□□ -0.37
LIMA1-211ENST00000552338 NUTM2AQ8IVF1 878 aaPredicted RBP12.72□□□□□ -0.37
LIMA1-211ENST00000552338 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.72□□□□□ -0.37
LIMA1-211ENST00000552338 PARP4Q9UKK3 1724 aaKnown RBP12.71□□□□□ -0.37
LIMA1-211ENST00000552338 ADAMTS2O95450 1211 aa12.71□□□□□ -0.37
LIMA1-211ENST00000552338 VPS72Q15906 364 aa12.71□□□□□ -0.37
LIMA1-211ENST00000552338 CCDC27Q2M243 656 aa12.71□□□□□ -0.37
LIMA1-211ENST00000552338 DISP2A7MBM2 1401 aa12.71□□□□□ -0.38
LIMA1-211ENST00000552338 PLEKHG5O94827 1062 aa12.7□□□□□ -0.38
LIMA1-211ENST00000552338 EVA1CP58658 441 aa12.7□□□□□ -0.38
LIMA1-211ENST00000552338 LARP1Q6PKG0 1096 aaKnown RBP12.7□□□□□ -0.38
LIMA1-211ENST00000552338 SPATA31A1Q5TZJ5 1347 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 SPATA31A5Q5VU36 1347 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 SPATA31A7Q8IWB4 1347 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 ZBTB7CA1YPR0 619 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 PRKAR2BP31323 418 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 BARGINQ6ZT62 677 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 AEBP1Q8IUX7 1158 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 CNKSR2Q8WXI2 1034 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 LTV1Q96GA3 475 aaPredicted RBP12.69□□□□□ -0.38
LIMA1-211ENST00000552338 NGLY1Q96IV0 654 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 ADAMTS7Q9UKP4 1686 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 ATRNO75882 1429 aa12.69□□□□□ -0.38
LIMA1-211ENST00000552338 HMOX1P09601 288 aa12.68□□□□□ -0.38
LIMA1-211ENST00000552338 AMOTQ4VCS5 1084 aa12.68□□□□□ -0.38
LIMA1-211ENST00000552338 TOM1L2Q6ZVM7 507 aa12.68□□□□□ -0.38
LIMA1-211ENST00000552338 CDCA7Q9BWT1 371 aaPredicted RBP12.68□□□□□ -0.38
LIMA1-211ENST00000552338 SHANK3Q9BYB0 1731 aa12.68□□□□□ -0.38
LIMA1-211ENST00000552338 VIRMAQ69YN4 1812 aaKnown RBP12.67□□□□□ -0.38
LIMA1-211ENST00000552338 ZNF521Q96K83 1311 aa12.67□□□□□ -0.38
LIMA1-211ENST00000552338 HTATSF1O43719 755 aaKnown RBP12.67□□□□□ -0.38
LIMA1-211ENST00000552338 ONECUT3O60422 494 aaPredicted RBP12.67□□□□□ -0.38
LIMA1-211ENST00000552338 CSB-PGBD3P0DP91 1061 aa12.67□□□□□ -0.38
LIMA1-211ENST00000552338 HOXD11P31277 338 aaPredicted RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms