RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-208ENST00000550662 PIK3CDO00329 1044 aa11.5□□□□□ -0.57
NPAS3-208ENST00000550662 USP17L3A6NCW0 530 aa11.49□□□□□ -0.57
NPAS3-208ENST00000550662 USP17L4A6NCW7 530 aa11.49□□□□□ -0.57
NPAS3-208ENST00000550662 USP17L5A8MUK1 530 aa11.49□□□□□ -0.57
NPAS3-208ENST00000550662 USP17L2Q6R6M4 530 aa11.49□□□□□ -0.57
NPAS3-208ENST00000550662 USP17L1Q7RTZ2 530 aa11.49□□□□□ -0.57
NPAS3-208ENST00000550662 AEBP1Q8IUX7 1158 aa11.49□□□□□ -0.57
NPAS3-208ENST00000550662 PRR20EP86478 221 aa11.48□□□□□ -0.57
NPAS3-208ENST00000550662 PRR20CP86479 221 aa11.48□□□□□ -0.57
NPAS3-208ENST00000550662 PRR20DP86480 221 aa11.48□□□□□ -0.57
NPAS3-208ENST00000550662 PRR20BP86481 221 aa11.48□□□□□ -0.57
NPAS3-208ENST00000550662 PRR20AP86496 221 aa11.48□□□□□ -0.57
NPAS3-208ENST00000550662 BPHLQ86WA6 291 aaPredicted RBP11.48□□□□□ -0.57
NPAS3-208ENST00000550662 RNF135Q8IUD6 432 aa11.48□□□□□ -0.57
NPAS3-208ENST00000550662 GDF9O60383 454 aa11.47□□□□□ -0.57
NPAS3-208ENST00000550662 ELOAQ14241 798 aaKnown RBP11.47□□□□□ -0.57
NPAS3-208ENST00000550662 KANK4Q5T7N3 995 aaPredicted RBP11.47□□□□□ -0.57
NPAS3-208ENST00000550662 ZNF697Q5TEC3 545 aa11.47□□□□□ -0.57
NPAS3-208ENST00000550662 SH3RF1Q7Z6J0 888 aa11.47□□□□□ -0.57
NPAS3-208ENST00000550662 DZIP3Q86Y13 1208 aaKnown RBP11.47□□□□□ -0.57
NPAS3-208ENST00000550662 FCF1Q9Y324 198 aaKnown RBP11.47□□□□□ -0.57
NPAS3-208ENST00000550662 MAP7D1Q3KQU3 841 aa11.46□□□□□ -0.57
NPAS3-208ENST00000550662 CDCA8Q53HL2 280 aa11.46□□□□□ -0.57
NPAS3-208ENST00000550662 PHTF2Q8N3S3 785 aa11.46□□□□□ -0.57
NPAS3-208ENST00000550662 FAM174AQ8TBP5 190 aa11.46□□□□□ -0.57
NPAS3-208ENST00000550662 BRD1O95696 1058 aa11.45□□□□□ -0.58
NPAS3-208ENST00000550662 ZNF511Q8NB15 262 aa11.45□□□□□ -0.58
NPAS3-208ENST00000550662 BAP1Q92560 729 aa11.45□□□□□ -0.58
NPAS3-208ENST00000550662 CHIC2Q9UKJ5 165 aa11.45□□□□□ -0.58
NPAS3-208ENST00000550662 AGERQ15109 404 aa11.44□□□□□ -0.58
NPAS3-208ENST00000550662 PLPP7Q8NBV4 271 aa11.44□□□□□ -0.58
NPAS3-208ENST00000550662 MAGEB6P1A0A0J9YX57 407 aa11.43□□□□□ -0.58
NPAS3-208ENST00000550662 CARD14Q9BXL6 1004 aa11.43□□□□□ -0.58
NPAS3-208ENST00000550662 ATP5J2-PTCD1G3V325 749 aa11.42□□□□□ -0.58
NPAS3-208ENST00000550662 KCNA1Q09470 495 aa11.42□□□□□ -0.58
NPAS3-208ENST00000550662 RNF20Q5VTR2 975 aa11.42□□□□□ -0.58
NPAS3-208ENST00000550662 CCDC9Q9Y3X0 531 aaKnown RBP11.42□□□□□ -0.58
NPAS3-208ENST00000550662 FAM196BA6NMK8 535 aa11.41□□□□□ -0.58
NPAS3-208ENST00000550662 DGAT1O75907 488 aa11.41□□□□□ -0.58
NPAS3-208ENST00000550662 MYT1Q01538 1121 aa11.41□□□□□ -0.58
NPAS3-208ENST00000550662 ERFEQ4G0M1 354 aa11.41□□□□□ -0.58
NPAS3-208ENST00000550662 ZNF787Q6DD87 383 aa11.41□□□□□ -0.58
NPAS3-208ENST00000550662 CCDC125Q86Z20 511 aa11.41□□□□□ -0.58
NPAS3-208ENST00000550662 MKRN1Q9UHC7 482 aaKnown RBP11.41□□□□□ -0.58
NPAS3-208ENST00000550662 CDV3Q9UKY7 258 aaKnown RBP11.41□□□□□ -0.58
NPAS3-208ENST00000550662 TMEM88BA6NKF7 163 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 TNFRSF10AO00220 468 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 ZBTB24O43167 697 aaPredicted RBP11.4□□□□□ -0.58
NPAS3-208ENST00000550662 NCOA4Q13772 614 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 EML3Q32P44 896 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 LINC01559Q495D7 138 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 B4GALNT3Q6L9W6 998 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 LARP1Q6PKG0 1096 aaKnown RBP11.4□□□□□ -0.58
NPAS3-208ENST00000550662 DEPDC4Q8N2C3 294 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 FOXJ1Q92949 421 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 SLC10A4Q96EP9 437 aa11.4□□□□□ -0.58
NPAS3-208ENST00000550662 NBPF20Q3BBV1 942 aa11.39□□□□□ -0.59
NPAS3-208ENST00000550662 PKDCCQ504Y2 493 aa11.39□□□□□ -0.59
NPAS3-208ENST00000550662 TRIM50Q86XT4 487 aa11.39□□□□□ -0.59
NPAS3-208ENST00000550662 C1QTNF2Q9BXJ5 285 aa11.39□□□□□ -0.59
NPAS3-208ENST00000550662 TRMT44Q8IYL2 757 aaKnown RBP11.38□□□□□ -0.59
NPAS3-208ENST00000550662 PKD2L1Q9P0L9 805 aa11.38□□□□□ -0.59
NPAS3-208ENST00000550662 NOVA2Q9UNW9 492 aaKnown RBP11.38□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L15C9J2P7 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L10C9JJH3 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L13C9JLJ4 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L12C9JPN9 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L11C9JVI0 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L21D6R901 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L18D6R9N7 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L22D6RA61 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L17D6RBQ6 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L19D6RCP7 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L20D6RJB6 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 USP17L24Q0WX57 530 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 DOLKQ9UPQ8 538 aa11.37□□□□□ -0.59
NPAS3-208ENST00000550662 RASA1P20936 1047 aa11.36□□□□□ -0.59
NPAS3-208ENST00000550662 RPIAP49247 311 aa11.36□□□□□ -0.59
NPAS3-208ENST00000550662 ATP1A2P50993 1020 aa11.36□□□□□ -0.59
NPAS3-208ENST00000550662 SH3BP2P78314 561 aa11.36□□□□□ -0.59
NPAS3-208ENST00000550662 C4orf48Q5BLP8 95 aa11.36□□□□□ -0.59
NPAS3-208ENST00000550662 SEPT12Q8IYM1 358 aa11.36□□□□□ -0.59
NPAS3-208ENST00000550662 ZMIZ1Q9ULJ6 1067 aa11.36□□□□□ -0.59
NPAS3-208ENST00000550662 NOD1Q9Y239 953 aa11.36□□□□□ -0.59
NPAS3-208ENST00000550662 GIGYF1O75420 1035 aaPredicted RBP11.34□□□□□ -0.59
NPAS3-208ENST00000550662 WNT7BP56706 349 aa11.34□□□□□ -0.59
NPAS3-208ENST00000550662 PTK7Q13308 1070 aa11.34□□□□□ -0.59
NPAS3-208ENST00000550662 CRTC2Q53ET0 693 aaPredicted RBP11.34□□□□□ -0.59
NPAS3-208ENST00000550662 SIRT1Q96EB6 747 aa11.34□□□□□ -0.59
NPAS3-208ENST00000550662 CDCA7Q9BWT1 371 aaPredicted RBP11.34□□□□□ -0.59
NPAS3-208ENST00000550662 FAM187AA6NFU0 413 aa11.33□□□□□ -0.6
NPAS3-208ENST00000550662 ESPNB1AK53 854 aa11.33□□□□□ -0.6
NPAS3-208ENST00000550662 FOXC1Q12948 553 aa11.33□□□□□ -0.6
NPAS3-208ENST00000550662 TRIM32Q13049 653 aa11.33□□□□□ -0.6
NPAS3-208ENST00000550662 TMEM164Q5U3C3 297 aa11.33□□□□□ -0.6
NPAS3-208ENST00000550662 FAM200AQ8TCP9 573 aa11.33□□□□□ -0.6
NPAS3-208ENST00000550662 CCDC85AQ96PX6 553 aaPredicted RBP11.33□□□□□ -0.6
NPAS3-208ENST00000550662 VARSP26640 1264 aaKnown RBP11.32□□□□□ -0.6
NPAS3-208ENST00000550662 ANKMY2Q8IV38 441 aa11.32□□□□□ -0.6
NPAS3-208ENST00000550662 OGFOD1Q8N543 542 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms