RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 SPATA31A3Q5VYP0 1347 aa10□□□□□ -0.81
LIMA1-204ENST00000549064 PRAG1Q86YV5 1406 aa9.99□□□□□ -0.81
LIMA1-204ENST00000549064 EZH2Q15910 746 aaKnown RBP9.99□□□□□ -0.81
LIMA1-204ENST00000549064 HOMEZQ8IX15 550 aa9.99□□□□□ -0.81
LIMA1-204ENST00000549064 CAMTA1Q9Y6Y1 1673 aa9.99□□□□□ -0.81
LIMA1-204ENST00000549064 LRPPRCP42704 1394 aaKnown RBP9.99□□□□□ -0.81
LIMA1-204ENST00000549064 FMN2Q9NZ56 1722 aa9.99□□□□□ -0.81
LIMA1-204ENST00000549064 NAIPQ13075 1403 aa9.99□□□□□ -0.81
LIMA1-204ENST00000549064 CD44P16070 742 aaKnown RBP9.98□□□□□ -0.81
LIMA1-204ENST00000549064 FAM98CQ17RN3 349 aaKnown RBP9.98□□□□□ -0.81
LIMA1-204ENST00000549064 TRPC6Q9Y210 931 aa9.98□□□□□ -0.81
LIMA1-204ENST00000549064 KIF1AQ12756 1690 aa9.98□□□□□ -0.81
LIMA1-204ENST00000549064 PPLO60437 1756 aa9.97□□□□□ -0.81
LIMA1-204ENST00000549064 GPIHBP1Q8IV16 184 aa9.97□□□□□ -0.81
LIMA1-204ENST00000549064 GPBP1L1Q9HC44 474 aaPredicted RBP9.97□□□□□ -0.81
LIMA1-204ENST00000549064 DISP2A7MBM2 1401 aa9.97□□□□□ -0.81
LIMA1-204ENST00000549064 MKRN3Q13064 507 aaKnown RBP9.96□□□□□ -0.82
LIMA1-204ENST00000549064 CHRDL2Q6WN34 429 aa9.96□□□□□ -0.82
LIMA1-204ENST00000549064 CCDC144AA2RUR9 1427 aa9.96□□□□□ -0.82
LIMA1-204ENST00000549064 TNS3Q68CZ2 1445 aa9.96□□□□□ -0.82
LIMA1-204ENST00000549064 RREB1Q92766 1687 aa9.96□□□□□ -0.82
LIMA1-204ENST00000549064 NUP188Q5SRE5 1749 aa9.96□□□□□ -0.82
LIMA1-204ENST00000549064 KRT28Q7Z3Y7 464 aa9.95□□□□□ -0.82
LIMA1-204ENST00000549064 WAPLQ7Z5K2 1190 aa9.95□□□□□ -0.82
LIMA1-204ENST00000549064 AK7Q96M32 723 aa9.95□□□□□ -0.82
LIMA1-204ENST00000549064 ROCK1Q13464 1354 aa9.95□□□□□ -0.82
LIMA1-204ENST00000549064 PLEKHH1Q9ULM0 1364 aa9.95□□□□□ -0.82
LIMA1-204ENST00000549064 THSD7AQ9UPZ6 1657 aa9.95□□□□□ -0.82
LIMA1-204ENST00000549064 IFT172Q9UG01 1749 aa9.94□□□□□ -0.82
LIMA1-204ENST00000549064 ADGRB2O60241 1585 aa9.94□□□□□ -0.82
LIMA1-204ENST00000549064 FAM83GA6ND36 823 aa9.94□□□□□ -0.82
LIMA1-204ENST00000549064 PPP1R15BQ5SWA1 713 aa9.94□□□□□ -0.82
LIMA1-204ENST00000549064 KRI1Q8N9T8 703 aaKnown RBP9.94□□□□□ -0.82
LIMA1-204ENST00000549064 MS4A3Q96HJ5 214 aa9.94□□□□□ -0.82
LIMA1-204ENST00000549064 CAMKK2Q96RR4 588 aa9.94□□□□□ -0.82
LIMA1-204ENST00000549064 STK26Q9P289 416 aa9.93□□□□□ -0.82
LIMA1-204ENST00000549064 TRIM37O94972 964 aa9.92□□□□□ -0.82
LIMA1-204ENST00000549064 ITGAEP38570 1179 aa9.92□□□□□ -0.82
LIMA1-204ENST00000549064 IFFO2Q5TF58 517 aa9.92□□□□□ -0.82
LIMA1-204ENST00000549064 BTG4Q9NY30 223 aa9.92□□□□□ -0.82
LIMA1-204ENST00000549064 KNDC1Q76NI1 1749 aa9.92□□□□□ -0.82
LIMA1-204ENST00000549064 COL14A1Q05707 1796 aaKnown RBP9.91□□□□□ -0.82
LIMA1-204ENST00000549064 SENP3-EIF4A1A0A087X0R7 540 aa9.91□□□□□ -0.82
LIMA1-204ENST00000549064 DPYSL4O14531 572 aa9.91□□□□□ -0.82
LIMA1-204ENST00000549064 PPP1R1BQ9UD71 204 aaPredicted RBP9.91□□□□□ -0.82
LIMA1-204ENST00000549064 UTRNP46939 3433 aa9.91□□□□□ -0.82
LIMA1-204ENST00000549064 ZNF784Q8NCA9 323 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-204ENST00000549064 IL27Q8NEV9 243 aa9.9□□□□□ -0.82
LIMA1-204ENST00000549064 GPHNQ9NQX3 736 aaPredicted RBP9.9□□□□□ -0.82
LIMA1-204ENST00000549064 TECPR2O15040 1411 aa9.9□□□□□ -0.83
LIMA1-204ENST00000549064 SPATA31A5Q5VU36 1347 aa9.89□□□□□ -0.83
LIMA1-204ENST00000549064 SPATA31A7Q8IWB4 1347 aa9.89□□□□□ -0.83
LIMA1-204ENST00000549064 APBA3O96018 575 aa9.89□□□□□ -0.83
LIMA1-204ENST00000549064 PSME1Q06323 249 aa9.89□□□□□ -0.83
LIMA1-204ENST00000549064 EMILIN3Q9NT22 766 aa9.89□□□□□ -0.83
LIMA1-204ENST00000549064 TRPM3Q9HCF6 1732 aaPredicted RBP9.89□□□□□ -0.83
LIMA1-204ENST00000549064 NRXN1Q9ULB1 1477 aa9.89□□□□□ -0.83
LIMA1-204ENST00000549064 SBNO1A3KN83 1393 aa9.88□□□□□ -0.83
LIMA1-204ENST00000549064 ARHGEF10O15013 1369 aa9.88□□□□□ -0.83
LIMA1-204ENST00000549064 NINLQ9Y2I6 1382 aa9.88□□□□□ -0.83
LIMA1-204ENST00000549064 CRYBG1Q9Y4K1 1723 aa9.88□□□□□ -0.83
LIMA1-204ENST00000549064 ALS2Q96Q42 1657 aa9.88□□□□□ -0.83
LIMA1-204ENST00000549064 TMEM132EQ6IEE7 984 aa9.88□□□□□ -0.83
LIMA1-204ENST00000549064 KDM4CQ9H3R0 1056 aa9.88□□□□□ -0.83
LIMA1-204ENST00000549064 SPON1Q9HCB6 807 aa9.88□□□□□ -0.83
LIMA1-204ENST00000549064 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.88□□□□□ -0.83
LIMA1-204ENST00000549064 DAXXQ9UER7 740 aaPredicted RBP9.88□□□□□ -0.83
LIMA1-204ENST00000549064 RPGRIP1LQ68CZ1 1315 aa9.87□□□□□ -0.83
LIMA1-204ENST00000549064 ADGRF5Q8IZF2 1346 aa9.87□□□□□ -0.83
LIMA1-204ENST00000549064 KCNQ2O43526 872 aa9.87□□□□□ -0.83
LIMA1-204ENST00000549064 NRKQ7Z2Y5 1582 aa9.87□□□□□ -0.83
LIMA1-204ENST00000549064 PARD3Q8TEW0 1356 aa9.87□□□□□ -0.83
LIMA1-204ENST00000549064 TRIM66O15016 1216 aa9.86□□□□□ -0.83
LIMA1-204ENST00000549064 DSG2Q14126 1118 aa9.86□□□□□ -0.83
LIMA1-204ENST00000549064 FAM196AQ6ZSG2 479 aa9.86□□□□□ -0.83
LIMA1-204ENST00000549064 MYOM1P52179 1685 aa9.86□□□□□ -0.83
LIMA1-204ENST00000549064 CHD4Q14839 1912 aa9.86□□□□□ -0.83
LIMA1-204ENST00000549064 PDE4DQ08499 809 aa9.85□□□□□ -0.83
LIMA1-204ENST00000549064 NBPF8Q3BBV2 869 aa9.85□□□□□ -0.83
LIMA1-204ENST00000549064 NBPF14Q5TI25 921 aa9.85□□□□□ -0.83
LIMA1-204ENST00000549064 PMFBP1Q8TBY8 1022 aa9.85□□□□□ -0.83
LIMA1-204ENST00000549064 CASZ1Q86V15 1759 aa9.85□□□□□ -0.83
LIMA1-204ENST00000549064 ABCC11Q96J66 1382 aa9.85□□□□□ -0.83
LIMA1-204ENST00000549064 RRBP1Q9P2E9 1410 aaKnown RBP9.84□□□□□ -0.83
LIMA1-204ENST00000549064 TTLL13PA6NNM8 815 aa9.84□□□□□ -0.83
LIMA1-204ENST00000549064 C1QTNF8P60827 252 aa9.84□□□□□ -0.83
LIMA1-204ENST00000549064 PDIA6Q15084 440 aa9.84□□□□□ -0.83
LIMA1-204ENST00000549064 DPY19L2Q6NUT2 758 aa9.84□□□□□ -0.83
LIMA1-204ENST00000549064 SPATA31A1Q5TZJ5 1347 aa9.83□□□□□ -0.84
LIMA1-204ENST00000549064 YTHDC2Q9H6S0 1430 aaKnown RBP9.83□□□□□ -0.84
LIMA1-204ENST00000549064 SPDYE16A6NNV3 312 aaPredicted RBP9.83□□□□□ -0.84
LIMA1-204ENST00000549064 CEP350Q5VT06 3117 aa9.83□□□□□ -0.84
LIMA1-204ENST00000549064 TIE1P35590 1138 aa9.82□□□□□ -0.84
LIMA1-204ENST00000549064 SAFB2Q14151 953 aaKnown RBP eCLIP9.82□□□□□ -0.84
LIMA1-204ENST00000549064 PDGFDQ9GZP0 370 aaPredicted RBP9.82□□□□□ -0.84
LIMA1-204ENST00000549064 PRDM11Q9NQV5 511 aa9.82□□□□□ -0.84
LIMA1-204ENST00000549064 STRN4Q9NRL3 753 aa9.82□□□□□ -0.84
LIMA1-204ENST00000549064 USP35Q9P2H5 1018 aa9.82□□□□□ -0.84
LIMA1-204ENST00000549064 GPR37O15354 613 aa9.81□□□□□ -0.84
LIMA1-204ENST00000549064 CHRNA2Q15822 529 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms