RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 NME9Q86XW9 330 aa13.14□□□□□ -0.31
YBX3-218ENST00000546298 CLSPNQ9HAW4 1339 aa13.13□□□□□ -0.31
YBX3-218ENST00000546298 TMF1P82094 1093 aa13.13□□□□□ -0.31
YBX3-218ENST00000546298 DDB1Q16531 1140 aa13.13□□□□□ -0.31
YBX3-218ENST00000546298 CDCA8Q53HL2 280 aa13.13□□□□□ -0.31
YBX3-218ENST00000546298 CARD10Q9BWT7 1032 aa13.13□□□□□ -0.31
YBX3-218ENST00000546298 THSD7AQ9UPZ6 1657 aa13.12□□□□□ -0.31
YBX3-218ENST00000546298 PCGF6Q9BYE7 350 aa13.12□□□□□ -0.31
YBX3-218ENST00000546298 DISP2A7MBM2 1401 aa13.12□□□□□ -0.31
YBX3-218ENST00000546298 EDC4Q6P2E9 1401 aaKnown RBP13.12□□□□□ -0.31
YBX3-218ENST00000546298 PIAS4Q8N2W9 510 aaPredicted RBP13.11□□□□□ -0.31
YBX3-218ENST00000546298 CAMKK2Q96RR4 588 aa13.11□□□□□ -0.31
YBX3-218ENST00000546298 LMO7Q8WWI1 1683 aa13.11□□□□□ -0.31
YBX3-218ENST00000546298 BRWD3Q6RI45 1802 aa13.11□□□□□ -0.31
YBX3-218ENST00000546298 A0A1W2PP64 1363 aa13.1□□□□□ -0.31
YBX3-218ENST00000546298 PARD3Q8TEW0 1356 aa13.1□□□□□ -0.31
YBX3-218ENST00000546298 EZH2Q15910 746 aaKnown RBP13.1□□□□□ -0.31
YBX3-218ENST00000546298 CD163L1Q9NR16 1453 aa13.1□□□□□ -0.31
YBX3-218ENST00000546298 USP47Q96K76 1375 aa13.09□□□□□ -0.31
YBX3-218ENST00000546298 CCDC7Q96M83 1385 aa13.09□□□□□ -0.31
YBX3-218ENST00000546298 EXOC5O00471 708 aa13.09□□□□□ -0.31
YBX3-218ENST00000546298 COG3Q96JB2 828 aa13.09□□□□□ -0.31
YBX3-218ENST00000546298 PSDA5PKW4 1024 aaPredicted RBP13.08□□□□□ -0.32
YBX3-218ENST00000546298 NBPF14Q5TI25 921 aa13.08□□□□□ -0.32
YBX3-218ENST00000546298 NLRP2Q9NX02 1062 aa13.08□□□□□ -0.32
YBX3-218ENST00000546298 OVOS2A0A0G2JMS6 1433 aa13.07□□□□□ -0.32
YBX3-218ENST00000546298 OVOS2A0A0J9YW53 1432 aa13.07□□□□□ -0.32
YBX3-218ENST00000546298 OVOS2Q6IE36 1432 aa13.07□□□□□ -0.32
YBX3-218ENST00000546298 PIK3C2AO00443 1686 aa13.07□□□□□ -0.32
YBX3-218ENST00000546298 ERBB3P21860 1342 aa13.07□□□□□ -0.32
YBX3-218ENST00000546298 R3HDM1Q15032 1099 aaKnown RBP13.06□□□□□ -0.32
YBX3-218ENST00000546298 ANKRD24Q8TF21 1146 aa13.06□□□□□ -0.32
YBX3-218ENST00000546298 BCL11BQ9C0K0 894 aaPredicted RBP13.06□□□□□ -0.32
YBX3-218ENST00000546298 ANKRD36BQ8N2N9 1353 aa13.06□□□□□ -0.32
YBX3-218ENST00000546298 NFAT5O94916 1531 aa13.05□□□□□ -0.32
YBX3-218ENST00000546298 ABCC6O95255 1503 aa13.05□□□□□ -0.32
YBX3-218ENST00000546298 MARCH10Q8NA82 808 aaPredicted RBP13.05□□□□□ -0.32
YBX3-218ENST00000546298 IP6K1Q92551 441 aa13.05□□□□□ -0.32
YBX3-218ENST00000546298 PLSCR1O15162 318 aa13.04□□□□□ -0.32
YBX3-218ENST00000546298 IL2RBP14784 551 aa13.04□□□□□ -0.32
YBX3-218ENST00000546298 AMPHP49418 695 aa13.04□□□□□ -0.32
YBX3-218ENST00000546298 AKAP12Q02952 1782 aa13.03□□□□□ -0.32
YBX3-218ENST00000546298 BCL9O00512 1426 aa13.03□□□□□ -0.32
YBX3-218ENST00000546298 RGPD1P0DJD0 1748 aa13.02□□□□□ -0.32
YBX3-218ENST00000546298 FYB1O15117 783 aa13.02□□□□□ -0.33
YBX3-218ENST00000546298 CCER1Q8TC90 406 aaPredicted RBP13.02□□□□□ -0.33
YBX3-218ENST00000546298 LTV1Q96GA3 475 aaPredicted RBP13.01□□□□□ -0.33
YBX3-218ENST00000546298 MAP3K19Q56UN5 1328 aa13.01□□□□□ -0.33
YBX3-218ENST00000546298 MON2Q7Z3U7 1717 aa13.01□□□□□ -0.33
YBX3-218ENST00000546298 COL18A1P39060 1754 aa13.01□□□□□ -0.33
YBX3-218ENST00000546298 HOXC9P31274 260 aa13□□□□□ -0.33
YBX3-218ENST00000546298 GGNBP2Q9H3C7 697 aa13□□□□□ -0.33
YBX3-218ENST00000546298 PARP4Q9UKK3 1724 aaKnown RBP12.99□□□□□ -0.33
YBX3-218ENST00000546298 TNS2Q63HR2 1409 aa12.97□□□□□ -0.33
YBX3-218ENST00000546298 RTL1A6NKG5 1358 aa12.97□□□□□ -0.33
YBX3-218ENST00000546298 FBLN1P23142 703 aa12.97□□□□□ -0.33
YBX3-218ENST00000546298 EIF4G2P78344 907 aaKnown RBP eCLIP12.97□□□□□ -0.33
YBX3-218ENST00000546298 PTF1AQ7RTS3 328 aa12.97□□□□□ -0.33
YBX3-218ENST00000546298 RRS1Q15050 365 aaKnown RBP12.96□□□□□ -0.33
YBX3-218ENST00000546298 USP54Q70EL1 1684 aa12.96□□□□□ -0.34
YBX3-218ENST00000546298 KCNQ2O43526 872 aa12.95□□□□□ -0.34
YBX3-218ENST00000546298 TXNRD1Q16881 649 aa12.95□□□□□ -0.34
YBX3-218ENST00000546298 DDX54Q8TDD1 881 aaKnown RBP12.95□□□□□ -0.34
YBX3-218ENST00000546298 ACSBG1Q96GR2 724 aa12.95□□□□□ -0.34
YBX3-218ENST00000546298 CARD14Q9BXL6 1004 aa12.95□□□□□ -0.34
YBX3-218ENST00000546298 TNS1Q9HBL0 1735 aaKnown RBP12.95□□□□□ -0.34
YBX3-218ENST00000546298 LRRC37A3O60309 1634 aa12.95□□□□□ -0.34
YBX3-218ENST00000546298 PROM2Q8N271 834 aa12.94□□□□□ -0.34
YBX3-218ENST00000546298 ZCRB1Q8TBF4 217 aaKnown RBP12.94□□□□□ -0.34
YBX3-218ENST00000546298 POLR3GLQ9BT43 218 aa12.94□□□□□ -0.34
YBX3-218ENST00000546298 SPON1Q9HCB6 807 aa12.94□□□□□ -0.34
YBX3-218ENST00000546298 STK32BQ9NY57 414 aa12.94□□□□□ -0.34
YBX3-218ENST00000546298 KIF24Q5T7B8 1368 aa12.94□□□□□ -0.34
YBX3-218ENST00000546298 EP400Q96L91 3159 aa12.93□□□□□ -0.34
YBX3-218ENST00000546298 CGNL1Q0VF96 1302 aa12.93□□□□□ -0.34
YBX3-218ENST00000546298 RAPGEF4Q8WZA2 1011 aa12.93□□□□□ -0.34
YBX3-218ENST00000546298 SMG6Q86US8 1419 aaKnown RBP12.93□□□□□ -0.34
YBX3-218ENST00000546298 HSPA5P11021 654 aaKnown RBP12.92□□□□□ -0.34
YBX3-218ENST00000546298 HSP90AB2PQ58FF8 381 aa12.92□□□□□ -0.34
YBX3-218ENST00000546298 NBPF6Q5VWK0 638 aa12.92□□□□□ -0.34
YBX3-218ENST00000546298 NBPF4Q96M43 638 aa12.92□□□□□ -0.34
YBX3-218ENST00000546298 NSD3Q9BZ95 1437 aa12.92□□□□□ -0.34
YBX3-218ENST00000546298 PEAK1Q9H792 1746 aa12.92□□□□□ -0.34
YBX3-218ENST00000546298 INSRP06213 1382 aa12.92□□□□□ -0.34
YBX3-218ENST00000546298 FLT4P35916 1363 aa12.92□□□□□ -0.34
YBX3-218ENST00000546298 TATP17735 454 aaPredicted RBP12.91□□□□□ -0.34
YBX3-218ENST00000546298 ANO8Q9HCE9 1232 aaPredicted RBP12.91□□□□□ -0.34
YBX3-218ENST00000546298 PPP1R1BQ9UD71 204 aaPredicted RBP12.91□□□□□ -0.34
YBX3-218ENST00000546298 LRP5O75197 1615 aa12.91□□□□□ -0.34
YBX3-218ENST00000546298 SLC15A2Q16348 729 aa12.9□□□□□ -0.34
YBX3-218ENST00000546298 PPM1GO15355 546 aaPredicted RBP12.89□□□□□ -0.35
YBX3-218ENST00000546298 SYTL4Q96C24 671 aaPredicted RBP12.89□□□□□ -0.35
YBX3-218ENST00000546298 PRIM1P49642 420 aaKnown RBP12.88□□□□□ -0.35
YBX3-218ENST00000546298 SLC27A3Q5K4L6 730 aa12.88□□□□□ -0.35
YBX3-218ENST00000546298 USHBP1Q8N6Y0 703 aa12.88□□□□□ -0.35
YBX3-218ENST00000546298 EMILIN1Q9Y6C2 1016 aa12.88□□□□□ -0.35
YBX3-218ENST00000546298 WASHC2AQ641Q2 1341 aa12.88□□□□□ -0.35
YBX3-218ENST00000546298 RGPD5Q99666 1765 aa12.87□□□□□ -0.35
YBX3-218ENST00000546298 HMGB2P26583 209 aaKnown RBP12.87□□□□□ -0.35
YBX3-218ENST00000546298 PANK3Q9H999 370 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms