RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 IFT57Q9NWB7 429 aa19.81■□□□□ 0.76
LDLR-204ENST00000545707 ZNF853P0CG23 659 aa19.8■□□□□ 0.76
LDLR-204ENST00000545707 RBM25P49756 843 aaKnown RBP19.8■□□□□ 0.76
LDLR-204ENST00000545707 ZNF692Q9BU19 519 aaPredicted RBP19.8■□□□□ 0.76
LDLR-204ENST00000545707 FOXD4L1Q9NU39 408 aa19.8■□□□□ 0.76
LDLR-204ENST00000545707 RIMS2Q9UQ26 1411 aa19.8■□□□□ 0.76
LDLR-204ENST00000545707 BMP2KLQ5H9B9 411 aa19.79■□□□□ 0.76
LDLR-204ENST00000545707 ZNF428Q96B54 188 aa19.79■□□□□ 0.76
LDLR-204ENST00000545707 NUDT16Q96DE0 195 aaKnown RBP19.79■□□□□ 0.76
LDLR-204ENST00000545707 METP08581 1390 aa19.78■□□□□ 0.76
LDLR-204ENST00000545707 A2ML1A8K2U0 1454 aa19.78■□□□□ 0.76
LDLR-204ENST00000545707 CDC42BPGQ6DT37 1551 aa19.78■□□□□ 0.76
LDLR-204ENST00000545707 MAP2P11137 1827 aaKnown RBP19.78■□□□□ 0.76
LDLR-204ENST00000545707 TRAK2O60296 914 aa19.78■□□□□ 0.76
LDLR-204ENST00000545707 CD2BP2O95400 341 aaKnown RBP19.78■□□□□ 0.76
LDLR-204ENST00000545707 COG3Q96JB2 828 aa19.78■□□□□ 0.76
LDLR-204ENST00000545707 RBM42Q9BTD8 480 aaKnown RBP19.78■□□□□ 0.76
LDLR-204ENST00000545707 ATP7BP35670 1465 aa19.77■□□□□ 0.76
LDLR-204ENST00000545707 CALD1Q05682 793 aaKnown RBP19.77■□□□□ 0.76
LDLR-204ENST00000545707 KRT24Q2M2I5 525 aa19.77■□□□□ 0.76
LDLR-204ENST00000545707 ARHGAP45Q92619 1136 aa19.77■□□□□ 0.76
LDLR-204ENST00000545707 GCC1Q96CN9 775 aa19.77■□□□□ 0.76
LDLR-204ENST00000545707 TBC1D9Q6ZT07 1266 aa19.77■□□□□ 0.76
LDLR-204ENST00000545707 CFAP44Q96MT7 982 aa19.77■□□□□ 0.76
LDLR-204ENST00000545707 KIF2CQ99661 725 aa19.77■□□□□ 0.76
LDLR-204ENST00000545707 XRCC6P12956 609 aaKnown RBP eCLIP19.76■□□□□ 0.75
LDLR-204ENST00000545707 AEBP1Q8IUX7 1158 aa19.76■□□□□ 0.75
LDLR-204ENST00000545707 CPSF1Q10570 1443 aaKnown RBP19.76■□□□□ 0.75
LDLR-204ENST00000545707 ABCC4O15439 1325 aa19.76■□□□□ 0.75
LDLR-204ENST00000545707 NUTM2FA1L443 756 aa19.75■□□□□ 0.75
LDLR-204ENST00000545707 PTCH1Q13635 1447 aa19.75■□□□□ 0.75
LDLR-204ENST00000545707 L1TD1Q5T7N2 865 aaKnown RBP19.75■□□□□ 0.75
LDLR-204ENST00000545707 PANK2Q9BZ23 570 aa19.75■□□□□ 0.75
LDLR-204ENST00000545707 EDC4Q6P2E9 1401 aaKnown RBP19.75■□□□□ 0.75
LDLR-204ENST00000545707 HSP90AB1P08238 724 aaKnown RBP19.75■□□□□ 0.75
LDLR-204ENST00000545707 GOLGA6L3A6NEY3 463 aa19.74■□□□□ 0.75
LDLR-204ENST00000545707 PIK3R4Q99570 1358 aa19.74■□□□□ 0.75
LDLR-204ENST00000545707 CPS1P31327 1500 aa19.74■□□□□ 0.75
LDLR-204ENST00000545707 FAM43AQ8N2R8 423 aa19.73■□□□□ 0.75
LDLR-204ENST00000545707 CCDC61Q9Y6R9 512 aa19.73■□□□□ 0.75
LDLR-204ENST00000545707 DDIT3P35638 169 aa19.73■□□□□ 0.75
LDLR-204ENST00000545707 SNX21Q969T3 373 aa19.73■□□□□ 0.75
LDLR-204ENST00000545707 C16orf71Q8IYS4 520 aaPredicted RBP19.72■□□□□ 0.75
LDLR-204ENST00000545707 SULT6B1Q6IMI4 303 aa19.72■□□□□ 0.75
LDLR-204ENST00000545707 TNPO1Q92973 898 aaKnown RBP19.72■□□□□ 0.75
LDLR-204ENST00000545707 SOX12O15370 315 aa19.71■□□□□ 0.75
LDLR-204ENST00000545707 RRAGDQ9NQL2 400 aaPredicted RBP19.71■□□□□ 0.75
LDLR-204ENST00000545707 DLC1Q96QB1 1528 aa19.71■□□□□ 0.75
LDLR-204ENST00000545707 FSD2A1L4K1 749 aa19.71■□□□□ 0.75
LDLR-204ENST00000545707 GSPT1P15170 499 aaKnown RBP19.71■□□□□ 0.75
LDLR-204ENST00000545707 MCM10Q7L590 875 aa19.71■□□□□ 0.75
LDLR-204ENST00000545707 CHMP4BQ9H444 224 aaKnown RBP19.71■□□□□ 0.75
LDLR-204ENST00000545707 PRR36Q9H6K5 1346 aa19.7■□□□□ 0.74
LDLR-204ENST00000545707 API5Q9BZZ5 524 aaKnown RBP19.7■□□□□ 0.74
LDLR-204ENST00000545707 CDK12Q9NYV4 1490 aaPredicted RBP19.7■□□□□ 0.74
LDLR-204ENST00000545707 APBB1O00213 710 aa19.7■□□□□ 0.74
LDLR-204ENST00000545707 HSP90AA1P07900 732 aaKnown RBP19.7■□□□□ 0.74
LDLR-204ENST00000545707 LMOD3Q0VAK6 560 aa19.7■□□□□ 0.74
LDLR-204ENST00000545707 NCOA3Q9Y6Q9 1424 aa19.69■□□□□ 0.74
LDLR-204ENST00000545707 AATKQ6ZMQ8 1374 aa19.69■□□□□ 0.74
LDLR-204ENST00000545707 EIF4A2Q14240 407 aaKnown RBP19.68■□□□□ 0.74
LDLR-204ENST00000545707 RIMBP3CA6NJZ7 1639 aa19.68■□□□□ 0.74
LDLR-204ENST00000545707 RIMBP3BA6NNM3 1639 aa19.68■□□□□ 0.74
LDLR-204ENST00000545707 RIMBP3Q9UFD9 1639 aa19.68■□□□□ 0.74
LDLR-204ENST00000545707 PLEKHM2Q8IWE5 1019 aa19.68■□□□□ 0.74
LDLR-204ENST00000545707 OTUD7AQ8TE49 926 aaPredicted RBP19.68■□□□□ 0.74
LDLR-204ENST00000545707 MIS18AQ9NYP9 233 aa19.67■□□□□ 0.74
LDLR-204ENST00000545707 DDX11L8A8MPP1 907 aa19.65■□□□□ 0.74
LDLR-204ENST00000545707 SMARCA5O60264 1052 aaPredicted RBP19.65■□□□□ 0.74
LDLR-204ENST00000545707 CDC45O75419 566 aa19.65■□□□□ 0.74
LDLR-204ENST00000545707 HSP90AB2PQ58FF8 381 aa19.65■□□□□ 0.74
LDLR-204ENST00000545707 SETD1AO15047 1707 aaKnown RBP19.65■□□□□ 0.74
LDLR-204ENST00000545707 TSPOAP1O95153 1857 aa19.65■□□□□ 0.74
LDLR-204ENST00000545707 EIF5BO60841 1220 aaKnown RBP19.65■□□□□ 0.74
LDLR-204ENST00000545707 GAS2L2Q8NHY3 880 aa19.65■□□□□ 0.74
LDLR-204ENST00000545707 DCTPP1Q9H773 170 aa19.65■□□□□ 0.74
LDLR-204ENST00000545707 K7ELQ4 463 aaPredicted RBP19.64■□□□□ 0.74
LDLR-204ENST00000545707 DLG5Q8TDM6 1919 aa19.64■□□□□ 0.73
LDLR-204ENST00000545707 RAB3GAP1Q15042 981 aa19.63■□□□□ 0.73
LDLR-204ENST00000545707 PPP6R1Q9UPN7 881 aa19.63■□□□□ 0.73
LDLR-204ENST00000545707 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.63■□□□□ 0.73
LDLR-204ENST00000545707 SPATA31D1Q6ZQQ2 1576 aa19.63■□□□□ 0.73
LDLR-204ENST00000545707 NRXN3Q9Y4C0 1643 aa19.62■□□□□ 0.73
LDLR-204ENST00000545707 INTS3Q68E01 1043 aaKnown RBP19.62■□□□□ 0.73
LDLR-204ENST00000545707 ESF1Q9H501 851 aaKnown RBP19.62■□□□□ 0.73
LDLR-204ENST00000545707 SSFA2P28290 1259 aa19.62■□□□□ 0.73
LDLR-204ENST00000545707 MEIS3Q99687 375 aa19.62■□□□□ 0.73
LDLR-204ENST00000545707 CHL1O00533 1208 aa19.61■□□□□ 0.73
LDLR-204ENST00000545707 FOXO3O43524 673 aa19.61■□□□□ 0.73
LDLR-204ENST00000545707 TTC21BQ7Z4L5 1316 aa19.61■□□□□ 0.73
LDLR-204ENST00000545707 KNDC1Q76NI1 1749 aa19.61■□□□□ 0.73
LDLR-204ENST00000545707 TTC22Q5TAA0 569 aa19.61■□□□□ 0.73
LDLR-204ENST00000545707 ACEP12821 1306 aa19.6■□□□□ 0.73
LDLR-204ENST00000545707 ROBO2Q9HCK4 1378 aa19.6■□□□□ 0.73
LDLR-204ENST00000545707 CEP85Q6P2H3 762 aa19.6■□□□□ 0.73
LDLR-204ENST00000545707 ANKRD44Q8N8A2 993 aa19.6■□□□□ 0.73
LDLR-204ENST00000545707 CIZ1Q9ULV3 898 aaPredicted RBP19.6■□□□□ 0.73
LDLR-204ENST00000545707 GAS2L3Q86XJ1 694 aa19.6■□□□□ 0.73
LDLR-204ENST00000545707 GBP4Q96PP9 640 aa19.59■□□□□ 0.73
LDLR-204ENST00000545707 GRPEL1Q9HAV7 217 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms