RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 TSKSQ9UJT2 592 aa8.52□□□□□ -1.05
SYNE1-239ENST00000545694 ZFYVE9O95405 1425 aa8.52□□□□□ -1.05
SYNE1-239ENST00000545694 PREX1Q8TCU6 1659 aa8.52□□□□□ -1.05
SYNE1-239ENST00000545694 SCAF11Q99590 1463 aaKnown RBP8.51□□□□□ -1.05
SYNE1-239ENST00000545694 ITGBL1O95965 494 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-239ENST00000545694 PAXIP1Q6ZW49 1069 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-239ENST00000545694 MROH2AA6NES4 1674 aa8.5□□□□□ -1.05
SYNE1-239ENST00000545694 ST20-MTHFSA0A0A6YYL1 179 aa8.5□□□□□ -1.05
SYNE1-239ENST00000545694 GRXCR2A6NFK2 248 aa8.5□□□□□ -1.05
SYNE1-239ENST00000545694 SPDYE16A6NNV3 312 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-239ENST00000545694 PRIM1P49642 420 aaKnown RBP8.5□□□□□ -1.05
SYNE1-239ENST00000545694 E2F4Q16254 413 aa8.5□□□□□ -1.05
SYNE1-239ENST00000545694 PACS2Q86VP3 889 aa8.5□□□□□ -1.05
SYNE1-239ENST00000545694 LRCH3Q96II8 777 aa8.5□□□□□ -1.05
SYNE1-239ENST00000545694 IRX2Q9BZI1 471 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-239ENST00000545694 SIGLEC1Q9BZZ2 1709 aa8.5□□□□□ -1.05
SYNE1-239ENST00000545694 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-239ENST00000545694 HPS5Q9UPZ3 1129 aa8.5□□□□□ -1.05
SYNE1-239ENST00000545694 COL17A1Q9UMD9 1497 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-239ENST00000545694 SYNMO15061 1565 aa8.49□□□□□ -1.05
SYNE1-239ENST00000545694 SMAPO00193 183 aa8.49□□□□□ -1.05
SYNE1-239ENST00000545694 TMF1P82094 1093 aa8.49□□□□□ -1.05
SYNE1-239ENST00000545694 SBNO2Q9Y2G9 1366 aa8.48□□□□□ -1.05
SYNE1-239ENST00000545694 MYO3AQ8NEV4 1616 aa8.48□□□□□ -1.05
SYNE1-239ENST00000545694 C11orf95C9JLR9 678 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-239ENST00000545694 WDR70Q9NW82 654 aa8.48□□□□□ -1.05
SYNE1-239ENST00000545694 TSR3Q9UJK0 312 aaKnown RBP8.48□□□□□ -1.05
SYNE1-239ENST00000545694 KDM5AP29375 1690 aaKnown RBP8.48□□□□□ -1.05
SYNE1-239ENST00000545694 SPATA31D1Q6ZQQ2 1576 aa8.48□□□□□ -1.05
SYNE1-239ENST00000545694 PIK3C2GO75747 1445 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 ERVK-7P63135 1459 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 KCNC4Q03721 635 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 NBPF1Q3BBV0 1214 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 NYAP1Q6ZVC0 841 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 CDCA7LQ96GN5 454 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 PRKRIP1Q9H875 184 aaPredicted RBP8.47□□□□□ -1.05
SYNE1-239ENST00000545694 FAM198AQ9UFP1 575 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 UGGT1Q9NYU2 1555 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 TMEM131LA2VDJ0 1609 aa8.47□□□□□ -1.05
SYNE1-239ENST00000545694 CLTCQ00610 1675 aaKnown RBP8.46□□□□□ -1.05
SYNE1-239ENST00000545694 C3orf80F5H4A9 247 aa8.46□□□□□ -1.06
SYNE1-239ENST00000545694 PRSS12P56730 875 aa8.46□□□□□ -1.06
SYNE1-239ENST00000545694 TESK2Q96S53 571 aa8.46□□□□□ -1.06
SYNE1-239ENST00000545694 C14orf93Q9H972 538 aaKnown RBP8.46□□□□□ -1.06
SYNE1-239ENST00000545694 RTN4Q9NQC3 1192 aaKnown RBP8.46□□□□□ -1.06
SYNE1-239ENST00000545694 NEXMIFQ5QGS0 1516 aa8.45□□□□□ -1.06
SYNE1-239ENST00000545694 RALBP1Q15311 655 aa8.45□□□□□ -1.06
SYNE1-239ENST00000545694 PUS7Q96PZ0 661 aaKnown RBP8.45□□□□□ -1.06
SYNE1-239ENST00000545694 ESF1Q9H501 851 aaKnown RBP8.45□□□□□ -1.06
SYNE1-239ENST00000545694 MYO5BQ9ULV0 1848 aa8.45□□□□□ -1.06
SYNE1-239ENST00000545694 HDGFP51858 240 aaKnown RBP8.44□□□□□ -1.06
SYNE1-239ENST00000545694 PPP4CP60510 307 aa8.44□□□□□ -1.06
SYNE1-239ENST00000545694 SAMD7Q7Z3H4 446 aa8.44□□□□□ -1.06
SYNE1-239ENST00000545694 IDI1Q13907 227 aa8.43□□□□□ -1.06
SYNE1-239ENST00000545694 AMER1Q5JTC6 1135 aaPredicted RBP8.43□□□□□ -1.06
SYNE1-239ENST00000545694 YTHDC1Q96MU7 727 aaKnown RBP8.43□□□□□ -1.06
SYNE1-239ENST00000545694 CDHR5Q9HBB8 845 aa8.43□□□□□ -1.06
SYNE1-239ENST00000545694 ADGRF5Q8IZF2 1346 aa8.43□□□□□ -1.06
SYNE1-239ENST00000545694 OSBPP22059 807 aa8.42□□□□□ -1.06
SYNE1-239ENST00000545694 TATDN2Q93075 761 aa8.42□□□□□ -1.06
SYNE1-239ENST00000545694 PNMA3Q9UL41 463 aa8.42□□□□□ -1.06
SYNE1-239ENST00000545694 ARIH1Q9Y4X5 557 aaPredicted RBP8.42□□□□□ -1.06
SYNE1-239ENST00000545694 NPC1L1Q9UHC9 1359 aa8.42□□□□□ -1.06
SYNE1-239ENST00000545694 ADGRB1O14514 1584 aa8.42□□□□□ -1.06
SYNE1-239ENST00000545694 ZMYM3Q14202 1370 aa8.41□□□□□ -1.06
SYNE1-239ENST00000545694 CFAP70Q5T0N1 1121 aa8.41□□□□□ -1.06
SYNE1-239ENST00000545694 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.41□□□□□ -1.06
SYNE1-239ENST00000545694 BRD4O60885 1362 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-239ENST00000545694 INSRP06213 1382 aa8.4□□□□□ -1.06
SYNE1-239ENST00000545694 DISP3Q9P2K9 1392 aa8.4□□□□□ -1.06
SYNE1-239ENST00000545694 CENPJQ9HC77 1338 aaPredicted RBP8.4□□□□□ -1.06
SYNE1-239ENST00000545694 CERKQ8TCT0 537 aa8.4□□□□□ -1.06
SYNE1-239ENST00000545694 NLRP1Q9C000 1473 aa8.39□□□□□ -1.07
SYNE1-239ENST00000545694 MYBBP1AQ9BQG0 1328 aaKnown RBP8.39□□□□□ -1.07
SYNE1-239ENST00000545694 NUDT18Q6ZVK8 323 aa8.39□□□□□ -1.07
SYNE1-239ENST00000545694 POLR3GLQ9BT43 218 aa8.39□□□□□ -1.07
SYNE1-239ENST00000545694 ARHGEF28Q8N1W1 1705 aaKnown RBP8.39□□□□□ -1.07
SYNE1-239ENST00000545694 QRICH2Q9H0J4 1663 aa8.39□□□□□ -1.07
SYNE1-239ENST00000545694 A2ML1A8K2U0 1454 aa8.38□□□□□ -1.07
SYNE1-239ENST00000545694 PARD3Q8TEW0 1356 aa8.38□□□□□ -1.07
SYNE1-239ENST00000545694 NINLQ9Y2I6 1382 aa8.38□□□□□ -1.07
SYNE1-239ENST00000545694 NBPF26B4DH59 902 aa8.38□□□□□ -1.07
SYNE1-239ENST00000545694 PER1O15534 1290 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-239ENST00000545694 TJAP1Q5JTD0 557 aa8.38□□□□□ -1.07
SYNE1-239ENST00000545694 MRS2Q9HD23 443 aa8.38□□□□□ -1.07
SYNE1-239ENST00000545694 SETD1BQ9UPS6 1966 aaKnown RBP8.38□□□□□ -1.07
SYNE1-239ENST00000545694 TNRQ92752 1358 aa8.37□□□□□ -1.07
SYNE1-239ENST00000545694 MYOM1P52179 1685 aa8.37□□□□□ -1.07
SYNE1-239ENST00000545694 RNF40O75150 1001 aa8.37□□□□□ -1.07
SYNE1-239ENST00000545694 NLRP13Q86W25 1043 aa8.37□□□□□ -1.07
SYNE1-239ENST00000545694 DLC1Q96QB1 1528 aa8.37□□□□□ -1.07
SYNE1-239ENST00000545694 FER1L4A9Z1Z3 1794 aa8.37□□□□□ -1.07
SYNE1-239ENST00000545694 ASXL1Q8IXJ9 1541 aa8.36□□□□□ -1.07
SYNE1-239ENST00000545694 PANK3Q9H999 370 aa8.36□□□□□ -1.07
SYNE1-239ENST00000545694 KNSTRNQ9Y448 316 aa8.36□□□□□ -1.07
SYNE1-239ENST00000545694 RIMS2Q9UQ26 1411 aa8.36□□□□□ -1.07
SYNE1-239ENST00000545694 ALKQ9UM73 1620 aa8.36□□□□□ -1.07
SYNE1-239ENST00000545694 EVC2Q86UK5 1308 aa8.35□□□□□ -1.07
SYNE1-239ENST00000545694 UBR1Q8IWV7 1749 aa8.35□□□□□ -1.07
SYNE1-239ENST00000545694 FBXO31Q5XUX0 539 aaPredicted RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms