RNA–Protein interactions for RNA: ENST00000544272.1

USP28-211, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 656 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-211ENST00000544272 USP17L15C9J2P7 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L10C9JJH3 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L13C9JLJ4 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L12C9JPN9 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L11C9JVI0 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L21D6R901 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L18D6R9N7 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L22D6RA61 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L17D6RBQ6 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L19D6RCP7 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L20D6RJB6 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 ATP5J2-PTCD1G3V325 749 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 PTPN5P54829 565 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 USP17L24Q0WX57 530 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 ZBTB33Q86T24 672 aa8.32□□□□□ -1.08
USP28-211ENST00000544272 BPHLQ86WA6 291 aaPredicted RBP8.31□□□□□ -1.08
USP28-211ENST00000544272 NKX2-3Q8TAU0 364 aa8.31□□□□□ -1.08
USP28-211ENST00000544272 BAP1Q92560 729 aa8.31□□□□□ -1.08
USP28-211ENST00000544272 S1PR4O95977 384 aa8.3□□□□□ -1.08
USP28-211ENST00000544272 TSGA10IPQ3SY00 556 aa8.3□□□□□ -1.08
USP28-211ENST00000544272 ERFEQ4G0M1 354 aa8.3□□□□□ -1.08
USP28-211ENST00000544272 C4orf48Q5BLP8 95 aa8.3□□□□□ -1.08
USP28-211ENST00000544272 NPM2Q86SE8 214 aaKnown RBP8.3□□□□□ -1.08
USP28-211ENST00000544272 DZIP3Q86Y13 1208 aaKnown RBP8.3□□□□□ -1.08
USP28-211ENST00000544272 ZNF511Q8NB15 262 aa8.3□□□□□ -1.08
USP28-211ENST00000544272 RGS22Q8NE09 1264 aa8.3□□□□□ -1.08
USP28-211ENST00000544272 C1QTNF2Q9BXJ5 285 aa8.3□□□□□ -1.08
USP28-211ENST00000544272 GNEQ9Y223 722 aaKnown RBP8.3□□□□□ -1.08
USP28-211ENST00000544272 FAM69CQ0P6D2 419 aa8.29□□□□□ -1.08
USP28-211ENST00000544272 EML3Q32P44 896 aa8.29□□□□□ -1.08
USP28-211ENST00000544272 B4GALNT3Q6L9W6 998 aa8.29□□□□□ -1.08
USP28-211ENST00000544272 FOXJ1Q92949 421 aa8.29□□□□□ -1.08
USP28-211ENST00000544272 CCDC85AQ96PX6 553 aaPredicted RBP8.29□□□□□ -1.08
USP28-211ENST00000544272 FCF1Q9Y324 198 aaKnown RBP8.29□□□□□ -1.08
USP28-211ENST00000544272 IVNS1ABPQ9Y6Y0 642 aa8.29□□□□□ -1.08
USP28-211ENST00000544272 RASA1P20936 1047 aa8.28□□□□□ -1.08
USP28-211ENST00000544272 MFAP1P55081 439 aaKnown RBP8.28□□□□□ -1.08
USP28-211ENST00000544272 PHLDB3Q6NSJ2 640 aa8.28□□□□□ -1.08
USP28-211ENST00000544272 LARP1Q6PKG0 1096 aaKnown RBP8.28□□□□□ -1.08
USP28-211ENST00000544272 CDCA7Q9BWT1 371 aaPredicted RBP8.28□□□□□ -1.08
USP28-211ENST00000544272 CARD14Q9BXL6 1004 aa8.28□□□□□ -1.08
USP28-211ENST00000544272 SLAIN2Q9P270 581 aa8.28□□□□□ -1.08
USP28-211ENST00000544272 MAGEB6P1A0A0J9YX57 407 aa8.27□□□□□ -1.09
USP28-211ENST00000544272 ESPNB1AK53 854 aa8.27□□□□□ -1.09
USP28-211ENST00000544272 GIGYF1O75420 1035 aaPredicted RBP8.27□□□□□ -1.09
USP28-211ENST00000544272 DKK1O94907 266 aa8.27□□□□□ -1.09
USP28-211ENST00000544272 LINC01559Q495D7 138 aa8.27□□□□□ -1.09
USP28-211ENST00000544272 ANKMY2Q8IV38 441 aa8.27□□□□□ -1.09
USP28-211ENST00000544272 TRMT44Q8IYL2 757 aaKnown RBP8.27□□□□□ -1.09
USP28-211ENST00000544272 CLP1Q92989 425 aaKnown RBP8.27□□□□□ -1.09
USP28-211ENST00000544272 SSFA2P28290 1259 aa8.26□□□□□ -1.09
USP28-211ENST00000544272 CLDN10P78369 228 aa8.26□□□□□ -1.09
USP28-211ENST00000544272 TRIM50Q86XT4 487 aa8.26□□□□□ -1.09
USP28-211ENST00000544272 CDAN1Q8IWY9 1227 aa8.26□□□□□ -1.09
USP28-211ENST00000544272 OGFOD1Q8N543 542 aa8.26□□□□□ -1.09
USP28-211ENST00000544272 DOLKQ9UPQ8 538 aa8.26□□□□□ -1.09
USP28-211ENST00000544272 NOD1Q9Y239 953 aa8.26□□□□□ -1.09
USP28-211ENST00000544272 ZBTB7BO15156 539 aaPredicted RBP8.25□□□□□ -1.09
USP28-211ENST00000544272 SH3BP2P78314 561 aa8.25□□□□□ -1.09
USP28-211ENST00000544272 RNF20Q5VTR2 975 aa8.25□□□□□ -1.09
USP28-211ENST00000544272 TXNDC2Q86VQ3 553 aa8.25□□□□□ -1.09
USP28-211ENST00000544272 LARGE2Q8N3Y3 721 aa8.25□□□□□ -1.09
USP28-211ENST00000544272 FAM200AQ8TCP9 573 aa8.25□□□□□ -1.09
USP28-211ENST00000544272 SLC10A4Q96EP9 437 aa8.25□□□□□ -1.09
USP28-211ENST00000544272 ATP1A2P50993 1020 aa8.24□□□□□ -1.09
USP28-211ENST00000544272 DPYDQ12882 1025 aa8.24□□□□□ -1.09
USP28-211ENST00000544272 AGERQ15109 404 aa8.24□□□□□ -1.09
USP28-211ENST00000544272 SWI5Q1ZZU3 235 aa8.24□□□□□ -1.09
USP28-211ENST00000544272 SND1Q7KZF4 910 aaKnown RBP eCLIP8.24□□□□□ -1.09
USP28-211ENST00000544272 CCDC125Q86Z20 511 aa8.24□□□□□ -1.09
USP28-211ENST00000544272 SEPT12Q8IYM1 358 aa8.24□□□□□ -1.09
USP28-211ENST00000544272 SIX5Q8N196 739 aa8.24□□□□□ -1.09
USP28-211ENST00000544272 DNAAF2Q9NVR5 837 aaKnown RBP8.24□□□□□ -1.09
USP28-211ENST00000544272 CDV3Q9UKY7 258 aaKnown RBP8.24□□□□□ -1.09
USP28-211ENST00000544272 ITGBL1O95965 494 aaPredicted RBP8.23□□□□□ -1.09
USP28-211ENST00000544272 NBPF20Q3BBV1 942 aa8.23□□□□□ -1.09
USP28-211ENST00000544272 KIAA1024Q9UPX6 916 aa8.23□□□□□ -1.09
USP28-211ENST00000544272 RANGAP1P46060 587 aaPredicted RBP8.22□□□□□ -1.09
USP28-211ENST00000544272 MTMR7Q9Y216 660 aa8.22□□□□□ -1.09
USP28-211ENST00000544272 PPEF1O14829 653 aaPredicted RBP8.21□□□□□ -1.1
USP28-211ENST00000544272 GTF2IP78347 998 aa8.21□□□□□ -1.1
USP28-211ENST00000544272 OXLD1Q5BKU9 147 aa8.21□□□□□ -1.1
USP28-211ENST00000544272 ZNF594Q96JF6 807 aaPredicted RBP8.21□□□□□ -1.1
USP28-211ENST00000544272 PCDHGA11Q9Y5H2 935 aa8.21□□□□□ -1.1
USP28-211ENST00000544272 RNF223E7ERA6 249 aa8.2□□□□□ -1.1
USP28-211ENST00000544272 KCNC4Q03721 635 aa8.2□□□□□ -1.1
USP28-211ENST00000544272 PLA2G2CQ5R387 149 aa8.2□□□□□ -1.1
USP28-211ENST00000544272 ANKLE1Q8NAG6 615 aa8.2□□□□□ -1.1
USP28-211ENST00000544272 C1orf216Q8TAB5 229 aa8.2□□□□□ -1.1
USP28-211ENST00000544272 MAP4K5Q9Y4K4 846 aa8.2□□□□□ -1.1
USP28-211ENST00000544272 ATP2B4P23634 1241 aa8.19□□□□□ -1.1
USP28-211ENST00000544272 ARID4AP29374 1257 aaPredicted RBP8.19□□□□□ -1.1
USP28-211ENST00000544272 SKOR1P84550 965 aa8.19□□□□□ -1.1
USP28-211ENST00000544272 TRIM32Q13049 653 aa8.19□□□□□ -1.1
USP28-211ENST00000544272 CCER1Q8TC90 406 aaPredicted RBP8.19□□□□□ -1.1
USP28-211ENST00000544272 SIRT1Q96EB6 747 aa8.19□□□□□ -1.1
USP28-211ENST00000544272 VARSP26640 1264 aaKnown RBP8.18□□□□□ -1.1
USP28-211ENST00000544272 WNT7BP56706 349 aa8.18□□□□□ -1.1
USP28-211ENST00000544272 USP4Q13107 963 aa8.18□□□□□ -1.1
USP28-211ENST00000544272 CCDC27Q2M243 656 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms