RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CDCA7Q9BWT1 371 aaPredicted RBP18.53■□□□□ 0.56
RTN3-213ENST00000543552 TERF2IPQ9NYB0 399 aa18.53■□□□□ 0.56
RTN3-213ENST00000543552 NFAT5O94916 1531 aa18.53■□□□□ 0.56
RTN3-213ENST00000543552 OVOS2A0A0G2JMS6 1433 aa18.52■□□□□ 0.56
RTN3-213ENST00000543552 OVOS2A0A0J9YW53 1432 aa18.52■□□□□ 0.56
RTN3-213ENST00000543552 OVOS2Q6IE36 1432 aa18.52■□□□□ 0.56
RTN3-213ENST00000543552 SOX12O15370 315 aa18.52■□□□□ 0.56
RTN3-213ENST00000543552 APBA3O96018 575 aa18.52■□□□□ 0.56
RTN3-213ENST00000543552 USP31Q70CQ4 1352 aa18.52■□□□□ 0.55
RTN3-213ENST00000543552 NINLQ9Y2I6 1382 aa18.52■□□□□ 0.55
RTN3-213ENST00000543552 LRP5O75197 1615 aa18.52■□□□□ 0.55
RTN3-213ENST00000543552 USP54Q70EL1 1684 aa18.51■□□□□ 0.55
RTN3-213ENST00000543552 EDC4Q6P2E9 1401 aaKnown RBP18.51■□□□□ 0.55
RTN3-213ENST00000543552 LRRC37A3O60309 1634 aa18.5■□□□□ 0.55
RTN3-213ENST00000543552 CSB-PGBD3P0DP91 1061 aa18.5■□□□□ 0.55
RTN3-213ENST00000543552 DDB1Q16531 1140 aa18.5■□□□□ 0.55
RTN3-213ENST00000543552 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.5■□□□□ 0.55
RTN3-213ENST00000543552 CD163L1Q9NR16 1453 aa18.5■□□□□ 0.55
RTN3-213ENST00000543552 PSDA5PKW4 1024 aaPredicted RBP18.49■□□□□ 0.55
RTN3-213ENST00000543552 EZH2Q15910 746 aaKnown RBP18.49■□□□□ 0.55
RTN3-213ENST00000543552 CAMKK2Q96RR4 588 aa18.49■□□□□ 0.55
RTN3-213ENST00000543552 AXIN2Q9Y2T1 843 aa18.49■□□□□ 0.55
RTN3-213ENST00000543552 WNK3Q9BYP7 1800 aa18.49■□□□□ 0.55
RTN3-213ENST00000543552 CARD10Q9BWT7 1032 aa18.48■□□□□ 0.55
RTN3-213ENST00000543552 CCDC7Q96M83 1385 aa18.47■□□□□ 0.55
RTN3-213ENST00000543552 SLC12A5Q9H2X9 1139 aa18.47■□□□□ 0.55
RTN3-213ENST00000543552 A0A1W2PP64 1363 aa18.46■□□□□ 0.55
RTN3-213ENST00000543552 R3HDM1Q15032 1099 aaKnown RBP18.46■□□□□ 0.55
RTN3-213ENST00000543552 NME9Q86XW9 330 aa18.46■□□□□ 0.55
RTN3-213ENST00000543552 RGPD5Q99666 1765 aa18.45■□□□□ 0.54
RTN3-213ENST00000543552 RREB1Q92766 1687 aa18.45■□□□□ 0.54
RTN3-213ENST00000543552 ST20-MTHFSA0A0A6YYL1 179 aa18.45■□□□□ 0.54
RTN3-213ENST00000543552 PEAK1Q9H792 1746 aa18.45■□□□□ 0.54
RTN3-213ENST00000543552 NBPF14Q5TI25 921 aa18.44■□□□□ 0.54
RTN3-213ENST00000543552 TESK2Q96S53 571 aa18.44■□□□□ 0.54
RTN3-213ENST00000543552 BCL9O00512 1426 aa18.43■□□□□ 0.54
RTN3-213ENST00000543552 RGPD3A6NKT7 1758 aaPredicted RBP18.42■□□□□ 0.54
RTN3-213ENST00000543552 LTN1O94822 1766 aa18.42■□□□□ 0.54
RTN3-213ENST00000543552 RGPD4Q7Z3J3 1758 aa18.42■□□□□ 0.54
RTN3-213ENST00000543552 ERBB3P21860 1342 aa18.42■□□□□ 0.54
RTN3-213ENST00000543552 NUP188Q5SRE5 1749 aa18.41■□□□□ 0.54
RTN3-213ENST00000543552 USP47Q96K76 1375 aa18.41■□□□□ 0.54
RTN3-213ENST00000543552 TNS2Q63HR2 1409 aa18.4■□□□□ 0.54
RTN3-213ENST00000543552 EXOC5O00471 708 aa18.4■□□□□ 0.54
RTN3-213ENST00000543552 TMF1P82094 1093 aa18.4■□□□□ 0.54
RTN3-213ENST00000543552 BCL11BQ9C0K0 894 aaPredicted RBP18.4■□□□□ 0.54
RTN3-213ENST00000543552 SBF2Q86WG5 1849 aa18.39■□□□□ 0.54
RTN3-213ENST00000543552 CDCA8Q53HL2 280 aa18.39■□□□□ 0.53
RTN3-213ENST00000543552 NLRP2Q9NX02 1062 aa18.39■□□□□ 0.53
RTN3-213ENST00000543552 TIMELESSQ9UNS1 1208 aa18.39■□□□□ 0.53
RTN3-213ENST00000543552 ANKRD36BQ8N2N9 1353 aa18.39■□□□□ 0.53
RTN3-213ENST00000543552 PLSCR1O15162 318 aa18.38■□□□□ 0.53
RTN3-213ENST00000543552 MARCH10Q8NA82 808 aaPredicted RBP18.38■□□□□ 0.53
RTN3-213ENST00000543552 COG3Q96JB2 828 aa18.38■□□□□ 0.53
RTN3-213ENST00000543552 ANKRD24Q8TF21 1146 aa18.37■□□□□ 0.53
RTN3-213ENST00000543552 CLSPNQ9HAW4 1339 aa18.37■□□□□ 0.53
RTN3-213ENST00000543552 FAM208AQ9UK61 1670 aaKnown RBP18.36■□□□□ 0.53
RTN3-213ENST00000543552 IL2RBP14784 551 aa18.35■□□□□ 0.53
RTN3-213ENST00000543552 IP6K1Q92551 441 aa18.34■□□□□ 0.53
RTN3-213ENST00000543552 RTL1A6NKG5 1358 aa18.31■□□□□ 0.52
RTN3-213ENST00000543552 AMPHP49418 695 aa18.3■□□□□ 0.52
RTN3-213ENST00000543552 NHSQ6T4R5 1651 aa18.3■□□□□ 0.52
RTN3-213ENST00000543552 MAP3K19Q56UN5 1328 aa18.29■□□□□ 0.52
RTN3-213ENST00000543552 SPON1Q9HCB6 807 aa18.28■□□□□ 0.52
RTN3-213ENST00000543552 SMG6Q86US8 1419 aaKnown RBP18.27■□□□□ 0.52
RTN3-213ENST00000543552 HOXC9P31274 260 aa18.27■□□□□ 0.52
RTN3-213ENST00000543552 PTF1AQ7RTS3 328 aa18.27■□□□□ 0.52
RTN3-213ENST00000543552 LTV1Q96GA3 475 aaPredicted RBP18.27■□□□□ 0.52
RTN3-213ENST00000543552 PCGF6Q9BYE7 350 aa18.27■□□□□ 0.52
RTN3-213ENST00000543552 KIF20BQ96Q89 1820 aa18.26■□□□□ 0.51
RTN3-213ENST00000543552 FYB1O15117 783 aa18.25■□□□□ 0.51
RTN3-213ENST00000543552 TXNRD1Q16881 649 aa18.25■□□□□ 0.51
RTN3-213ENST00000543552 PPP1R1BQ9UD71 204 aaPredicted RBP18.25■□□□□ 0.51
RTN3-213ENST00000543552 KCNQ2O43526 872 aa18.24■□□□□ 0.51
RTN3-213ENST00000543552 GGNBP2Q9H3C7 697 aa18.24■□□□□ 0.51
RTN3-213ENST00000543552 STK32BQ9NY57 414 aa18.24■□□□□ 0.51
RTN3-213ENST00000543552 KIF24Q5T7B8 1368 aa18.23■□□□□ 0.51
RTN3-213ENST00000543552 ACSBG1Q96GR2 724 aa18.23■□□□□ 0.51
RTN3-213ENST00000543552 ANO8Q9HCE9 1232 aaPredicted RBP18.23■□□□□ 0.51
RTN3-213ENST00000543552 PROM2Q8N271 834 aa18.22■□□□□ 0.51
RTN3-213ENST00000543552 MYOM1P52179 1685 aa18.22■□□□□ 0.51
RTN3-213ENST00000543552 RRS1Q15050 365 aaKnown RBP18.21■□□□□ 0.51
RTN3-213ENST00000543552 DDX54Q8TDD1 881 aaKnown RBP18.21■□□□□ 0.51
RTN3-213ENST00000543552 CASZ1Q86V15 1759 aa18.21■□□□□ 0.51
RTN3-213ENST00000543552 BTAF1O14981 1849 aa18.21■□□□□ 0.51
RTN3-213ENST00000543552 CGNL1Q0VF96 1302 aa18.21■□□□□ 0.51
RTN3-213ENST00000543552 FLT4P35916 1363 aa18.2■□□□□ 0.5
RTN3-213ENST00000543552 NSD3Q9BZ95 1437 aa18.2■□□□□ 0.5
RTN3-213ENST00000543552 SLC15A2Q16348 729 aa18.19■□□□□ 0.5
RTN3-213ENST00000543552 INSRP06213 1382 aa18.18■□□□□ 0.5
RTN3-213ENST00000543552 FBLN1P23142 703 aa18.18■□□□□ 0.5
RTN3-213ENST00000543552 ZCRB1Q8TBF4 217 aaKnown RBP18.18■□□□□ 0.5
RTN3-213ENST00000543552 RAPGEF4Q8WZA2 1011 aa18.18■□□□□ 0.5
RTN3-213ENST00000543552 KAT6BQ8WYB5 2073 aa18.18■□□□□ 0.5
RTN3-213ENST00000543552 DCAF8L1A6NGE4 600 aa18.17■□□□□ 0.5
RTN3-213ENST00000543552 MEGF6O75095 1541 aa18.17■□□□□ 0.5
RTN3-213ENST00000543552 SLC27A3Q5K4L6 730 aa18.16■□□□□ 0.5
RTN3-213ENST00000543552 CCER1Q8TC90 406 aaPredicted RBP18.16■□□□□ 0.5
RTN3-213ENST00000543552 RGPD2P0DJD1 1756 aa18.16■□□□□ 0.5
RTN3-213ENST00000543552 NBPF6Q5VWK0 638 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms