RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-211ENST00000541351 ABTB2Q8N961 1025 aa14.16□□□□□ -0.14
YBX3-211ENST00000541351 HIRIP3Q9BW71 556 aaPredicted RBP14.16□□□□□ -0.14
YBX3-211ENST00000541351 NUTM2GQ5VZR2 741 aa14.15□□□□□ -0.14
YBX3-211ENST00000541351 LRRC37A3O60309 1634 aa14.15□□□□□ -0.14
YBX3-211ENST00000541351 SPATA31E1Q6ZUB1 1445 aa14.15□□□□□ -0.14
YBX3-211ENST00000541351 PRR36Q9H6K5 1346 aa14.15□□□□□ -0.15
YBX3-211ENST00000541351 LMO7Q8WWI1 1683 aa14.14□□□□□ -0.15
YBX3-211ENST00000541351 LOC105371045A0A1W2PR82 267 aa14.14□□□□□ -0.15
YBX3-211ENST00000541351 MARCH10Q8NA82 808 aaPredicted RBP14.14□□□□□ -0.15
YBX3-211ENST00000541351 ZNF526Q8TF50 670 aaPredicted RBP14.14□□□□□ -0.15
YBX3-211ENST00000541351 MINK1Q8N4C8 1332 aaPredicted RBP14.14□□□□□ -0.15
YBX3-211ENST00000541351 TOPAZ1Q8N9V7 1692 aa14.14□□□□□ -0.15
YBX3-211ENST00000541351 ITSN1Q15811 1721 aa14.13□□□□□ -0.15
YBX3-211ENST00000541351 EXOC5O00471 708 aa14.13□□□□□ -0.15
YBX3-211ENST00000541351 YBX3P16989 372 aaKnown RBP eCLIP14.13□□□□□ -0.159e-7■■□□□ 13.6
YBX3-211ENST00000541351 COL13A1Q5TAT6 717 aaPredicted RBP14.13□□□□□ -0.15
YBX3-211ENST00000541351 PTF1AQ7RTS3 328 aa14.13□□□□□ -0.15
YBX3-211ENST00000541351 BRD4O60885 1362 aaPredicted RBP14.12□□□□□ -0.15
YBX3-211ENST00000541351 GCP02774 474 aa14.12□□□□□ -0.15
YBX3-211ENST00000541351 CFAP70Q5T0N1 1121 aa14.12□□□□□ -0.15
YBX3-211ENST00000541351 NLGN2Q8NFZ4 835 aa14.12□□□□□ -0.15
YBX3-211ENST00000541351 USP19O94966 1318 aa14.12□□□□□ -0.15
YBX3-211ENST00000541351 ADCY9O60503 1353 aa14.11□□□□□ -0.15
YBX3-211ENST00000541351 TOMM70O94826 608 aa14.11□□□□□ -0.15
YBX3-211ENST00000541351 DNAJC5GQ8N7S2 189 aa14.11□□□□□ -0.15
YBX3-211ENST00000541351 AKAP12Q02952 1782 aa14.11□□□□□ -0.15
YBX3-211ENST00000541351 NUDT16Q96DE0 195 aaKnown RBP14.1□□□□□ -0.15
YBX3-211ENST00000541351 GOLGB1Q14789 3259 aaKnown RBP14.1□□□□□ -0.15
YBX3-211ENST00000541351 HMGB2P26583 209 aaKnown RBP14.09□□□□□ -0.15
YBX3-211ENST00000541351 SLC27A3Q5K4L6 730 aa14.09□□□□□ -0.15
YBX3-211ENST00000541351 TFCP2L1Q9NZI6 479 aa14.09□□□□□ -0.15
YBX3-211ENST00000541351 WDR17Q8IZU2 1322 aa14.09□□□□□ -0.15
YBX3-211ENST00000541351 POLR3AO14802 1390 aaPredicted RBP14.09□□□□□ -0.15
YBX3-211ENST00000541351 ZBTB7CA1YPR0 619 aa14.08□□□□□ -0.16
YBX3-211ENST00000541351 KLRG1Q96E93 195 aa14.08□□□□□ -0.16
YBX3-211ENST00000541351 TRAK1Q9UPV9 953 aa14.08□□□□□ -0.16
YBX3-211ENST00000541351 KIF3CO14782 793 aa14.07□□□□□ -0.16
YBX3-211ENST00000541351 ZNF827Q17R98 1081 aa14.07□□□□□ -0.16
YBX3-211ENST00000541351 JMYQ8N9B5 988 aa14.07□□□□□ -0.16
YBX3-211ENST00000541351 CD2APQ9Y5K6 639 aa14.07□□□□□ -0.16
YBX3-211ENST00000541351 ACEP12821 1306 aa14.07□□□□□ -0.16
YBX3-211ENST00000541351 PAPPAQ13219 1627 aa14.06□□□□□ -0.16
YBX3-211ENST00000541351 CSB-PGBD3P0DP91 1061 aa14.06□□□□□ -0.16
YBX3-211ENST00000541351 CCDC61Q9Y6R9 512 aa14.06□□□□□ -0.16
YBX3-211ENST00000541351 CARD10Q9BWT7 1032 aa14.05□□□□□ -0.16
YBX3-211ENST00000541351 WWC3Q9ULE0 1092 aa14.05□□□□□ -0.16
YBX3-211ENST00000541351 CCDC7Q96M83 1385 aa14.05□□□□□ -0.16
YBX3-211ENST00000541351 AKT1S1Q96B36 256 aa14.04□□□□□ -0.16
YBX3-211ENST00000541351 USP6P35125 1406 aa14.04□□□□□ -0.16
YBX3-211ENST00000541351 QSER1Q2KHR3 1735 aa14.04□□□□□ -0.16
YBX3-211ENST00000541351 PLEKHG3A1L390 1219 aa14.03□□□□□ -0.16
YBX3-211ENST00000541351 C16orf71Q8IYS4 520 aaPredicted RBP14.03□□□□□ -0.16
YBX3-211ENST00000541351 PNPLA7Q6ZV29 1317 aa14.03□□□□□ -0.16
YBX3-211ENST00000541351 TNS2Q63HR2 1409 aa14.03□□□□□ -0.16
YBX3-211ENST00000541351 NHSQ6T4R5 1651 aa14.03□□□□□ -0.16
YBX3-211ENST00000541351 COL24A1Q17RW2 1714 aa14.02□□□□□ -0.16
YBX3-211ENST00000541351 MSH5O43196 834 aa14.02□□□□□ -0.17
YBX3-211ENST00000541351 ACSBG1Q96GR2 724 aa14.02□□□□□ -0.17
YBX3-211ENST00000541351 WNK3Q9BYP7 1800 aa14□□□□□ -0.17
YBX3-211ENST00000541351 NLRP6P59044 892 aa14□□□□□ -0.17
YBX3-211ENST00000541351 RBM46Q8TBY0 533 aaKnown RBP14□□□□□ -0.17
YBX3-211ENST00000541351 FSTL1Q12841 308 aa13.99□□□□□ -0.17
YBX3-211ENST00000541351 CDK19Q9BWU1 502 aa13.99□□□□□ -0.17
YBX3-211ENST00000541351 LRRC4BQ9NT99 713 aa13.99□□□□□ -0.17
YBX3-211ENST00000541351 KCNH5Q8NCM2 988 aa13.98□□□□□ -0.17
YBX3-211ENST00000541351 WDR90Q96KV7 1748 aa13.98□□□□□ -0.17
YBX3-211ENST00000541351 ADGRB1O14514 1584 aa13.97□□□□□ -0.17
YBX3-211ENST00000541351 ABCC6O95255 1503 aa13.97□□□□□ -0.17
YBX3-211ENST00000541351 FLAD1Q8NFF5 587 aa13.97□□□□□ -0.17
YBX3-211ENST00000541351 STAC3Q96MF2 364 aa13.97□□□□□ -0.17
YBX3-211ENST00000541351 ARHGEF28Q8N1W1 1705 aaKnown RBP13.96□□□□□ -0.17
YBX3-211ENST00000541351 TRPM1Q7Z4N2 1603 aa13.96□□□□□ -0.17
YBX3-211ENST00000541351 PPIP5K1Q6PFW1 1433 aa13.96□□□□□ -0.18
YBX3-211ENST00000541351 CPSF1Q10570 1443 aaKnown RBP13.95□□□□□ -0.18
YBX3-211ENST00000541351 BTAF1O14981 1849 aa13.94□□□□□ -0.18
YBX3-211ENST00000541351 SLIT3O75094 1523 aa13.94□□□□□ -0.18
YBX3-211ENST00000541351 IL2RBP14784 551 aa13.93□□□□□ -0.18
YBX3-211ENST00000541351 MPHOSPH9Q99550 1183 aa13.93□□□□□ -0.18
YBX3-211ENST00000541351 AXIN2Q9Y2T1 843 aa13.93□□□□□ -0.18
YBX3-211ENST00000541351 IGSF1Q8N6C5 1336 aa13.92□□□□□ -0.18
YBX3-211ENST00000541351 ARHGEF25Q86VW2 580 aa13.92□□□□□ -0.18
YBX3-211ENST00000541351 KAT6BQ8WYB5 2073 aa13.91□□□□□ -0.18
YBX3-211ENST00000541351 HSPA1AP0DMV8 641 aaKnown RBP13.91□□□□□ -0.18
YBX3-211ENST00000541351 HSPA1BP0DMV9 641 aaKnown RBP13.91□□□□□ -0.18
YBX3-211ENST00000541351 SRPK2P78362 688 aaKnown RBP13.9□□□□□ -0.18
YBX3-211ENST00000541351 CCNL1Q9UK58 526 aaPredicted RBP13.9□□□□□ -0.18
YBX3-211ENST00000541351 MSL1Q68DK7 614 aa13.89□□□□□ -0.19
YBX3-211ENST00000541351 COL23A1Q86Y22 540 aaPredicted RBP13.89□□□□□ -0.19
YBX3-211ENST00000541351 SYTL4Q96C24 671 aaPredicted RBP13.89□□□□□ -0.19
YBX3-211ENST00000541351 KDM2BQ8NHM5 1336 aa13.89□□□□□ -0.19
YBX3-211ENST00000541351 COL18A1P39060 1754 aa13.88□□□□□ -0.19
YBX3-211ENST00000541351 PLEKHG2Q9H7P9 1386 aa13.88□□□□□ -0.19
YBX3-211ENST00000541351 NLRP2Q9NX02 1062 aa13.88□□□□□ -0.19
YBX3-211ENST00000541351 SMC1BQ8NDV3 1235 aa13.87□□□□□ -0.19
YBX3-211ENST00000541351 NMRK2Q9NPI5 230 aa13.87□□□□□ -0.19
YBX3-211ENST00000541351 PIK3C2AO00443 1686 aa13.86□□□□□ -0.19
YBX3-211ENST00000541351 HTRA3P83110 453 aa13.86□□□□□ -0.19
YBX3-211ENST00000541351 NSD3Q9BZ95 1437 aa13.85□□□□□ -0.19
YBX3-211ENST00000541351 CICQ96RK0 1608 aaPredicted RBP13.85□□□□□ -0.19
YBX3-211ENST00000541351 USP47Q96K76 1375 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms