RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 HSPA1AP0DMV8 641 aaKnown RBP12.05□□□□□ -0.48
CHD4-208ENST00000540960 HSPA1BP0DMV9 641 aaKnown RBP12.05□□□□□ -0.48
CHD4-208ENST00000540960 POLD1P28340 1107 aa12.05□□□□□ -0.48
CHD4-208ENST00000540960 KNDC1Q76NI1 1749 aa12.05□□□□□ -0.48
CHD4-208ENST00000540960 AATKQ6ZMQ8 1374 aa12.05□□□□□ -0.48
CHD4-208ENST00000540960 ABCC11Q96J66 1382 aa12.05□□□□□ -0.48
CHD4-208ENST00000540960 ARHGEF28Q8N1W1 1705 aaKnown RBP12.04□□□□□ -0.48
CHD4-208ENST00000540960 PAK3O75914 559 aaPredicted RBP12.04□□□□□ -0.48
CHD4-208ENST00000540960 NUTM2GQ5VZR2 741 aa12.04□□□□□ -0.48
CHD4-208ENST00000540960 THRAP3Q9Y2W1 955 aaKnown RBP12.04□□□□□ -0.48
CHD4-208ENST00000540960 LMO7Q8WWI1 1683 aa12.03□□□□□ -0.48
CHD4-208ENST00000540960 SAFB2Q14151 953 aaKnown RBP eCLIP12.02□□□□□ -0.49
CHD4-208ENST00000540960 DDB1Q16531 1140 aa12.02□□□□□ -0.49
CHD4-208ENST00000540960 ADGRF5Q8IZF2 1346 aa12.02□□□□□ -0.49
CHD4-208ENST00000540960 AKAP12Q02952 1782 aa12.01□□□□□ -0.49
CHD4-208ENST00000540960 LRRC4BQ9NT99 713 aa12.01□□□□□ -0.49
CHD4-208ENST00000540960 GPRASP1Q5JY77 1395 aa12.01□□□□□ -0.49
CHD4-208ENST00000540960 TUBGCP6Q96RT7 1819 aa12□□□□□ -0.49
CHD4-208ENST00000540960 NMRK2Q9NPI5 230 aa12□□□□□ -0.49
CHD4-208ENST00000540960 SLC16A10Q8TF71 515 aa11.99□□□□□ -0.49
CHD4-208ENST00000540960 RPGRIP1LQ68CZ1 1315 aa11.99□□□□□ -0.49
CHD4-208ENST00000540960 PNPLA7Q6ZV29 1317 aa11.99□□□□□ -0.49
CHD4-208ENST00000540960 PRR36Q9H6K5 1346 aa11.98□□□□□ -0.49
CHD4-208ENST00000540960 AKT1S1Q96B36 256 aa11.98□□□□□ -0.49
CHD4-208ENST00000540960 QSER1Q2KHR3 1735 aa11.97□□□□□ -0.49
CHD4-208ENST00000540960 BCL9O00512 1426 aa11.97□□□□□ -0.49
CHD4-208ENST00000540960 YTHDC2Q9H6S0 1430 aaKnown RBP11.97□□□□□ -0.49
CHD4-208ENST00000540960 COL5A2P05997 1499 aaPredicted RBP11.96□□□□□ -0.49
CHD4-208ENST00000540960 WNK3Q9BYP7 1800 aa11.96□□□□□ -0.49
CHD4-208ENST00000540960 TULP4Q9NRJ4 1543 aa11.96□□□□□ -0.5
CHD4-208ENST00000540960 CRB1P82279 1406 aa11.95□□□□□ -0.5
CHD4-208ENST00000540960 ANKARQ7Z5J8 1434 aa11.95□□□□□ -0.5
CHD4-208ENST00000540960 RBM46Q8TBY0 533 aaKnown RBP11.95□□□□□ -0.5
CHD4-208ENST00000540960 ACSBG1Q96GR2 724 aa11.95□□□□□ -0.5
CHD4-208ENST00000540960 NGDNQ8NEJ9 315 aaKnown RBP11.94□□□□□ -0.5
CHD4-208ENST00000540960 SIRT1Q96EB6 747 aa11.94□□□□□ -0.5
CHD4-208ENST00000540960 PRAM1Q96QH2 718 aa11.94□□□□□ -0.5
CHD4-208ENST00000540960 KCNQ4P56696 695 aa11.93□□□□□ -0.5
CHD4-208ENST00000540960 HIRIP3Q9BW71 556 aaPredicted RBP11.93□□□□□ -0.5
CHD4-208ENST00000540960 NHSQ6T4R5 1651 aa11.93□□□□□ -0.5
CHD4-208ENST00000540960 BTAF1O14981 1849 aa11.93□□□□□ -0.5
CHD4-208ENST00000540960 KAT6BQ8WYB5 2073 aa11.92□□□□□ -0.5
CHD4-208ENST00000540960 MSL1Q68DK7 614 aa11.92□□□□□ -0.5
CHD4-208ENST00000540960 CPDO75976 1380 aa11.92□□□□□ -0.5
CHD4-208ENST00000540960 KIAA1210Q9ULL0 1709 aa11.91□□□□□ -0.5
CHD4-208ENST00000540960 TFCP2L1Q9NZI6 479 aa11.9□□□□□ -0.5
CHD4-208ENST00000540960 CD2APQ9Y5K6 639 aa11.9□□□□□ -0.5
CHD4-208ENST00000540960 FSTL1Q12841 308 aa11.89□□□□□ -0.51
CHD4-208ENST00000540960 TOM1L2Q6ZVM7 507 aa11.89□□□□□ -0.51
CHD4-208ENST00000540960 ZBTB7CA1YPR0 619 aa11.88□□□□□ -0.51
CHD4-208ENST00000540960 MLLT1Q03111 559 aaPredicted RBP11.88□□□□□ -0.51
CHD4-208ENST00000540960 IGSF1Q8N6C5 1336 aa11.87□□□□□ -0.51
CHD4-208ENST00000540960 ZNF316A6NFI3 1004 aaPredicted RBP11.87□□□□□ -0.51
CHD4-208ENST00000540960 RGL3Q3MIN7 710 aa11.87□□□□□ -0.51
CHD4-208ENST00000540960 COL23A1Q86Y22 540 aaPredicted RBP11.87□□□□□ -0.51
CHD4-208ENST00000540960 FOXN1O15353 648 aa11.86□□□□□ -0.51
CHD4-208ENST00000540960 MSH5O43196 834 aa11.86□□□□□ -0.51
CHD4-208ENST00000540960 GCP02774 474 aa11.86□□□□□ -0.51
CHD4-208ENST00000540960 C16orf71Q8IYS4 520 aaPredicted RBP11.86□□□□□ -0.51
CHD4-208ENST00000540960 ABHD8Q96I13 439 aa11.86□□□□□ -0.51
CHD4-208ENST00000540960 ANKRD30BQ9BXX2 1392 aa11.86□□□□□ -0.51
CHD4-208ENST00000540960 PIK3C2GO75747 1445 aa11.86□□□□□ -0.51
CHD4-208ENST00000540960 USP6P35125 1406 aa11.86□□□□□ -0.51
CHD4-208ENST00000540960 MINK1Q8N4C8 1332 aaPredicted RBP11.86□□□□□ -0.51
CHD4-208ENST00000540960 BRD4O60885 1362 aaPredicted RBP11.85□□□□□ -0.51
CHD4-208ENST00000540960 EXOC5O00471 708 aa11.85□□□□□ -0.51
CHD4-208ENST00000540960 POGKQ9P215 609 aa11.85□□□□□ -0.51
CHD4-208ENST00000540960 AXIN2Q9Y2T1 843 aa11.85□□□□□ -0.51
CHD4-208ENST00000540960 RGPD5Q99666 1765 aa11.84□□□□□ -0.51
CHD4-208ENST00000540960 ABTB2Q8N961 1025 aa11.84□□□□□ -0.51
CHD4-208ENST00000540960 CICQ96RK0 1608 aaPredicted RBP11.84□□□□□ -0.51
CHD4-208ENST00000540960 COL18A1P39060 1754 aa11.84□□□□□ -0.51
CHD4-208ENST00000540960 USP19O94966 1318 aa11.84□□□□□ -0.51
CHD4-208ENST00000540960 TONSLQ96HA7 1378 aa11.83□□□□□ -0.52
CHD4-208ENST00000540960 RGS19P49795 217 aa11.83□□□□□ -0.52
CHD4-208ENST00000540960 CFAP70Q5T0N1 1121 aa11.83□□□□□ -0.52
CHD4-208ENST00000540960 MPHOSPH9Q99550 1183 aa11.83□□□□□ -0.52
CHD4-208ENST00000540960 WASLO00401 505 aaPredicted RBP11.82□□□□□ -0.52
CHD4-208ENST00000540960 CDCA7Q9BWT1 371 aaPredicted RBP11.82□□□□□ -0.52
CHD4-208ENST00000540960 RRAGCQ9HB90 399 aa11.82□□□□□ -0.52
CHD4-208ENST00000540960 TNRC18O15417 2968 aaPredicted RBP11.82□□□□□ -0.52
CHD4-208ENST00000540960 SLC4A1APQ9BWU0 796 aaKnown RBP11.81□□□□□ -0.52
CHD4-208ENST00000540960 C14orf93Q9H972 538 aaKnown RBP11.81□□□□□ -0.52
CHD4-208ENST00000540960 PRDM10Q9NQV6 1147 aa11.81□□□□□ -0.52
CHD4-208ENST00000540960 WDR17Q8IZU2 1322 aa11.81□□□□□ -0.52
CHD4-208ENST00000540960 KCPQ6ZWJ8 1503 aa11.81□□□□□ -0.52
CHD4-208ENST00000540960 SLC27A3Q5K4L6 730 aa11.8□□□□□ -0.52
CHD4-208ENST00000540960 SMIM5Q71RC9 77 aa11.79□□□□□ -0.52
CHD4-208ENST00000540960 TRPM1Q7Z4N2 1603 aa11.78□□□□□ -0.52
CHD4-208ENST00000540960 ITSN1Q15811 1721 aa11.78□□□□□ -0.52
CHD4-208ENST00000540960 CCDC85CA6NKD9 419 aa11.78□□□□□ -0.52
CHD4-208ENST00000540960 NEUROD1Q13562 356 aa11.78□□□□□ -0.52
CHD4-208ENST00000540960 SMC1BQ8NDV3 1235 aa11.78□□□□□ -0.52
CHD4-208ENST00000540960 NUDT16Q96DE0 195 aaKnown RBP11.78□□□□□ -0.52
CHD4-208ENST00000540960 ACEP12821 1306 aa11.78□□□□□ -0.52
CHD4-208ENST00000540960 PDE4DIPQ5VU43 2346 aa11.77□□□□□ -0.52
CHD4-208ENST00000540960 CARD10Q9BWT7 1032 aa11.77□□□□□ -0.53
CHD4-208ENST00000540960 LY75O60449 1722 aa11.77□□□□□ -0.53
CHD4-208ENST00000540960 SPATA31E1Q6ZUB1 1445 aa11.77□□□□□ -0.53
CHD4-208ENST00000540960 PIK3C2AO00443 1686 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms