RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 TTBK1Q5TCY1 1321 aaPredicted RBP8.72□□□□□ -1.01
PRKDC-209ENST00000540819 GRM5P41594 1212 aa8.71□□□□□ -1.02
PRKDC-209ENST00000540819 CLK2P49760 499 aaKnown RBP8.71□□□□□ -1.02
PRKDC-209ENST00000540819 ITPKCQ96DU7 683 aa8.71□□□□□ -1.02
PRKDC-209ENST00000540819 ZFAND3Q9H8U3 227 aa8.71□□□□□ -1.02
PRKDC-209ENST00000540819 MAN1A2O60476 641 aa8.7□□□□□ -1.02
PRKDC-209ENST00000540819 BMP2P12643 396 aa8.7□□□□□ -1.02
PRKDC-209ENST00000540819 C4orf48Q5BLP8 95 aa8.7□□□□□ -1.02
PRKDC-209ENST00000540819 RTL5Q5HYW3 569 aaPredicted RBP8.7□□□□□ -1.02
PRKDC-209ENST00000540819 C6orf118Q5T5N4 469 aa8.7□□□□□ -1.02
PRKDC-209ENST00000540819 ZSCAN1Q8NBB4 408 aa8.7□□□□□ -1.02
PRKDC-209ENST00000540819 DDRGK1Q96HY6 314 aa8.7□□□□□ -1.02
PRKDC-209ENST00000540819 FAM117AQ9C073 453 aa8.7□□□□□ -1.02
PRKDC-209ENST00000540819 POLR3EQ9NVU0 708 aa8.7□□□□□ -1.02
PRKDC-209ENST00000540819 ATP1B4Q9UN42 357 aaPredicted RBP8.7□□□□□ -1.02
PRKDC-209ENST00000540819 MAGEB6P1A0A0J9YX57 407 aa8.69□□□□□ -1.02
PRKDC-209ENST00000540819 NR3C2P08235 984 aa8.69□□□□□ -1.02
PRKDC-209ENST00000540819 VASH1Q7L8A9 365 aaPredicted RBP8.69□□□□□ -1.02
PRKDC-209ENST00000540819 SOBPA7XYQ1 873 aa8.68□□□□□ -1.02
PRKDC-209ENST00000540819 TMCO4Q5TGY1 634 aa8.68□□□□□ -1.02
PRKDC-209ENST00000540819 GPKOWQ92917 476 aaPredicted RBP eCLIP8.67□□□□□ -1.02
PRKDC-209ENST00000540819 ERBB4Q15303 1308 aa8.66□□□□□ -1.02
PRKDC-209ENST00000540819 IGSF3O75054 1194 aa8.66□□□□□ -1.02
PRKDC-209ENST00000540819 HMGB1P09429 215 aaKnown RBP8.66□□□□□ -1.02
PRKDC-209ENST00000540819 FSHRP23945 695 aa8.66□□□□□ -1.02
PRKDC-209ENST00000540819 SH3RF1Q7Z6J0 888 aa8.66□□□□□ -1.02
PRKDC-209ENST00000540819 AEBP1Q8IUX7 1158 aa8.66□□□□□ -1.02
PRKDC-209ENST00000540819 MAP4K5Q9Y4K4 846 aa8.66□□□□□ -1.02
PRKDC-209ENST00000540819 EMILIN1Q9Y6C2 1016 aa8.66□□□□□ -1.02
PRKDC-209ENST00000540819 SH3BP5LQ7L8J4 393 aa8.65□□□□□ -1.02
PRKDC-209ENST00000540819 C1QTNF2Q9BXJ5 285 aa8.65□□□□□ -1.02
PRKDC-209ENST00000540819 CARD14Q9BXL6 1004 aa8.65□□□□□ -1.02
PRKDC-209ENST00000540819 MTMR7Q9Y216 660 aa8.65□□□□□ -1.02
PRKDC-209ENST00000540819 CTDSPL2Q05D32 466 aa8.64□□□□□ -1.03
PRKDC-209ENST00000540819 TRMT44Q8IYL2 757 aaKnown RBP8.64□□□□□ -1.03
PRKDC-209ENST00000540819 LINC00528Q8N1L1 170 aa8.64□□□□□ -1.03
PRKDC-209ENST00000540819 CLUAP1Q96AJ1 413 aa8.64□□□□□ -1.03
PRKDC-209ENST00000540819 TSEN34Q9BSV6 310 aaKnown RBP8.64□□□□□ -1.03
PRKDC-209ENST00000540819 GOPCQ9HD26 462 aa8.64□□□□□ -1.03
PRKDC-209ENST00000540819 CCDC116Q8IYX3 515 aa8.63□□□□□ -1.03
PRKDC-209ENST00000540819 MEIOBQ8N635 442 aa8.63□□□□□ -1.03
PRKDC-209ENST00000540819 SERPINA10Q9UK55 444 aa8.63□□□□□ -1.03
PRKDC-209ENST00000540819 MFAP1P55081 439 aaKnown RBP8.62□□□□□ -1.03
PRKDC-209ENST00000540819 PDXDC2PQ6P474 469 aa8.62□□□□□ -1.03
PRKDC-209ENST00000540819 ARHGAP9Q9BRR9 750 aa8.62□□□□□ -1.03
PRKDC-209ENST00000540819 PGPEP1Q9NXJ5 209 aa8.62□□□□□ -1.03
PRKDC-209ENST00000540819 SKIV2LQ15477 1246 aaKnown RBP8.61□□□□□ -1.03
PRKDC-209ENST00000540819 CCDC97Q96F63 343 aaPredicted RBP8.61□□□□□ -1.03
PRKDC-209ENST00000540819 PPFIA3O75145 1194 aa8.6□□□□□ -1.03
PRKDC-209ENST00000540819 ERFEQ4G0M1 354 aa8.6□□□□□ -1.03
PRKDC-209ENST00000540819 ZBTB33Q86T24 672 aa8.6□□□□□ -1.03
PRKDC-209ENST00000540819 FKBPLQ9UIM3 349 aa8.6□□□□□ -1.03
PRKDC-209ENST00000540819 CDV3Q9UKY7 258 aaKnown RBP8.6□□□□□ -1.03
PRKDC-209ENST00000540819 SOS2Q07890 1332 aaPredicted RBP8.59□□□□□ -1.03
PRKDC-209ENST00000540819 SLC10A4Q96EP9 437 aa8.59□□□□□ -1.03
PRKDC-209ENST00000540819 VSIG8P0DPA2 414 aa8.58□□□□□ -1.04
PRKDC-209ENST00000540819 LORP23490 312 aaPredicted RBP8.58□□□□□ -1.04
PRKDC-209ENST00000540819 RBM25P49756 843 aaKnown RBP8.58□□□□□ -1.04
PRKDC-209ENST00000540819 DHX9Q08211 1270 aaKnown RBP8.58□□□□□ -1.04
PRKDC-209ENST00000540819 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.58□□□□□ -1.04
PRKDC-209ENST00000540819 PPP1R26Q5T8A7 1209 aaPredicted RBP8.58□□□□□ -1.04
PRKDC-209ENST00000540819 LRRN4Q8WUT4 740 aa8.58□□□□□ -1.04
PRKDC-209ENST00000540819 GZF1Q9H116 711 aaPredicted RBP8.58□□□□□ -1.04
PRKDC-209ENST00000540819 TTLL8A6PVC2 850 aa8.57□□□□□ -1.04
PRKDC-209ENST00000540819 PTK2Q05397 1052 aa8.57□□□□□ -1.04
PRKDC-209ENST00000540819 PNMA1Q8ND90 353 aa8.57□□□□□ -1.04
PRKDC-209ENST00000540819 KCTD15Q96SI1 283 aaPredicted RBP8.57□□□□□ -1.04
PRKDC-209ENST00000540819 FIGNL2A6NMB9 653 aa8.56□□□□□ -1.04
PRKDC-209ENST00000540819 NR6A1Q15406 480 aa8.56□□□□□ -1.04
PRKDC-209ENST00000540819 SH3D19Q5HYK7 790 aa8.56□□□□□ -1.04
PRKDC-209ENST00000540819 PROSER2Q86WR7 435 aaPredicted RBP8.56□□□□□ -1.04
PRKDC-209ENST00000540819 DNMT3LQ9UJW3 386 aa8.56□□□□□ -1.04
PRKDC-209ENST00000540819 ZC3H4Q9UPT8 1303 aaKnown RBP8.55□□□□□ -1.04
PRKDC-209ENST00000540819 AP1G2O75843 785 aa8.55□□□□□ -1.04
PRKDC-209ENST00000540819 HSP90B1P14625 803 aaKnown RBP8.55□□□□□ -1.04
PRKDC-209ENST00000540819 FOXD4L5Q5VV16 416 aaPredicted RBP8.55□□□□□ -1.04
PRKDC-209ENST00000540819 PROCA1Q8NCQ7 364 aaPredicted RBP8.55□□□□□ -1.04
PRKDC-209ENST00000540819 FOXD4L4Q8WXT5 416 aaPredicted RBP8.55□□□□□ -1.04
PRKDC-209ENST00000540819 ZNF777Q9ULD5 760 aaPredicted RBP8.55□□□□□ -1.04
PRKDC-209ENST00000540819 E9PSI1 815 aa8.54□□□□□ -1.04
PRKDC-209ENST00000540819 CBLBQ13191 982 aa8.54□□□□□ -1.04
PRKDC-209ENST00000540819 MCM6Q14566 821 aa8.54□□□□□ -1.04
PRKDC-209ENST00000540819 RETREG2Q8NC44 543 aa8.54□□□□□ -1.04
PRKDC-209ENST00000540819 PPP2R2DQ66LE6 453 aa8.53□□□□□ -1.04
PRKDC-209ENST00000540819 Q6ZVU0 165 aa8.53□□□□□ -1.04
PRKDC-209ENST00000540819 PCMTD1Q96MG8 357 aaPredicted RBP8.53□□□□□ -1.04
PRKDC-209ENST00000540819 GPSM3Q9Y4H4 160 aa8.53□□□□□ -1.04
PRKDC-209ENST00000540819 CDK11BP21127 795 aaKnown RBP8.52□□□□□ -1.05
PRKDC-209ENST00000540819 PTSQ03393 145 aa8.52□□□□□ -1.05
PRKDC-209ENST00000540819 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.52□□□□□ -1.05
PRKDC-209ENST00000540819 CDK11AQ9UQ88 783 aaPredicted RBP8.52□□□□□ -1.05
PRKDC-209ENST00000540819 PATL2C9JE40 543 aaKnown RBP8.51□□□□□ -1.05
PRKDC-209ENST00000540819 SPINT1O43278 529 aa8.51□□□□□ -1.05
PRKDC-209ENST00000540819 FNBP4Q8N3X1 1017 aaPredicted RBP8.51□□□□□ -1.05
PRKDC-209ENST00000540819 RELBQ01201 579 aa8.5□□□□□ -1.05
PRKDC-209ENST00000540819 PDE4CQ08493 712 aa8.5□□□□□ -1.05
PRKDC-209ENST00000540819 NBPF20Q3BBV1 942 aa8.5□□□□□ -1.05
PRKDC-209ENST00000540819 INTS6LQ5JSJ4 861 aaKnown RBP8.5□□□□□ -1.05
PRKDC-209ENST00000540819 ADAM32Q8TC27 787 aa8.5□□□□□ -1.05
PRKDC-209ENST00000540819 ZNF428Q96B54 188 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms