RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 CPSF1Q10570 1443 aaKnown RBP12.52□□□□□ -0.4
TRAF1-202ENST00000540010 PTPRUQ92729 1446 aa12.52□□□□□ -0.41
TRAF1-202ENST00000540010 CENPQQ7L2Z9 268 aaPredicted RBP12.52□□□□□ -0.41
TRAF1-202ENST00000540010 MSNP26038 577 aaKnown RBP12.52□□□□□ -0.41
TRAF1-202ENST00000540010 DNAJC5Q9H3Z4 198 aa12.51□□□□□ -0.41
TRAF1-202ENST00000540010 GOLGA6L3A6NEY3 463 aa12.51□□□□□ -0.41
TRAF1-202ENST00000540010 RARSP54136 660 aaKnown RBP12.51□□□□□ -0.41
TRAF1-202ENST00000540010 CPS1P31327 1500 aa12.51□□□□□ -0.41
TRAF1-202ENST00000540010 LMOD3Q0VAK6 560 aa12.51□□□□□ -0.41
TRAF1-202ENST00000540010 PLEKHF1Q96S99 279 aa12.51□□□□□ -0.41
TRAF1-202ENST00000540010 SULT6B1Q6IMI4 303 aa12.51□□□□□ -0.41
TRAF1-202ENST00000540010 ABTB2Q8N961 1025 aa12.51□□□□□ -0.41
TRAF1-202ENST00000540010 MSH5O43196 834 aa12.5□□□□□ -0.41
TRAF1-202ENST00000540010 NFE2L2Q16236 605 aa12.5□□□□□ -0.41
TRAF1-202ENST00000540010 RSPH6AQ9H0K4 717 aa12.5□□□□□ -0.41
TRAF1-202ENST00000540010 CHMP4BQ9H444 224 aaKnown RBP12.5□□□□□ -0.41
TRAF1-202ENST00000540010 ESCO1Q5FWF5 840 aa12.5□□□□□ -0.41
TRAF1-202ENST00000540010 IPO8O15397 1037 aaKnown RBP12.49□□□□□ -0.41
TRAF1-202ENST00000540010 THUMPD2Q9BTF0 503 aaKnown RBP12.49□□□□□ -0.41
TRAF1-202ENST00000540010 SLIT1O75093 1534 aa12.49□□□□□ -0.41
TRAF1-202ENST00000540010 IL13P35225 146 aa12.49□□□□□ -0.41
TRAF1-202ENST00000540010 PSME1Q06323 249 aa12.49□□□□□ -0.41
TRAF1-202ENST00000540010 PDE3AQ14432 1141 aa12.49□□□□□ -0.41
TRAF1-202ENST00000540010 LTV1Q96GA3 475 aaPredicted RBP12.49□□□□□ -0.41
TRAF1-202ENST00000540010 TRIM35Q9UPQ4 493 aa12.49□□□□□ -0.41
TRAF1-202ENST00000540010 PHACTR3Q96KR7 559 aa12.49□□□□□ -0.41
TRAF1-202ENST00000540010 SETD1AO15047 1707 aaKnown RBP12.49□□□□□ -0.41
TRAF1-202ENST00000540010 ARHGAP23Q9P227 1491 aa12.49□□□□□ -0.41
TRAF1-202ENST00000540010 RIMS1Q86UR5 1692 aaKnown RBP12.49□□□□□ -0.41
TRAF1-202ENST00000540010 CDC42BPGQ6DT37 1551 aa12.48□□□□□ -0.41
TRAF1-202ENST00000540010 ELL2O00472 640 aaPredicted RBP12.48□□□□□ -0.41
TRAF1-202ENST00000540010 ZKSCAN2Q63HK3 967 aa12.48□□□□□ -0.41
TRAF1-202ENST00000540010 GBP4Q96PP9 640 aa12.48□□□□□ -0.41
TRAF1-202ENST00000540010 TTC21AQ8NDW8 1320 aa12.48□□□□□ -0.41
TRAF1-202ENST00000540010 HSP90AB2PQ58FF8 381 aa12.48□□□□□ -0.41
TRAF1-202ENST00000540010 PNPLA6Q8IY17 1366 aa12.48□□□□□ -0.41
TRAF1-202ENST00000540010 PROSER2Q86WR7 435 aaPredicted RBP12.47□□□□□ -0.41
TRAF1-202ENST00000540010 PHF8Q9UPP1 1060 aa12.47□□□□□ -0.41
TRAF1-202ENST00000540010 SHPRHQ149N8 1683 aa12.47□□□□□ -0.41
TRAF1-202ENST00000540010 USP6P35125 1406 aa12.47□□□□□ -0.41
TRAF1-202ENST00000540010 AATKQ6ZMQ8 1374 aa12.47□□□□□ -0.41
TRAF1-202ENST00000540010 PHF23Q9BUL5 403 aaPredicted RBP12.47□□□□□ -0.41
TRAF1-202ENST00000540010 EIF4A2Q14240 407 aaKnown RBP12.47□□□□□ -0.41
TRAF1-202ENST00000540010 NCBP3Q53F19 620 aaKnown RBP12.47□□□□□ -0.41
TRAF1-202ENST00000540010 CEP170BQ9Y4F5 1589 aaPredicted RBP12.47□□□□□ -0.41
TRAF1-202ENST00000540010 KCNJ4P48050 445 aa12.46□□□□□ -0.41
TRAF1-202ENST00000540010 GNAI1P63096 354 aa12.46□□□□□ -0.41
TRAF1-202ENST00000540010 OS9Q13438 667 aaPredicted RBP12.46□□□□□ -0.41
TRAF1-202ENST00000540010 NFKBIBQ15653 356 aa12.46□□□□□ -0.41
TRAF1-202ENST00000540010 A0A0G2JS52 829 aa12.46□□□□□ -0.41
TRAF1-202ENST00000540010 IL27Q8NEV9 243 aa12.46□□□□□ -0.41
TRAF1-202ENST00000540010 KIF20BQ96Q89 1820 aa12.46□□□□□ -0.42
TRAF1-202ENST00000540010 CT47B1P0C2W7 299 aaPredicted RBP12.46□□□□□ -0.42
TRAF1-202ENST00000540010 PTCH1Q13635 1447 aa12.46□□□□□ -0.42
TRAF1-202ENST00000540010 IQSEC2Q5JU85 1478 aa12.46□□□□□ -0.42
TRAF1-202ENST00000540010 RTF1Q92541 710 aaKnown RBP12.46□□□□□ -0.42
TRAF1-202ENST00000540010 IL16Q14005 1332 aa12.45□□□□□ -0.42
TRAF1-202ENST00000540010 AEBP1Q8IUX7 1158 aa12.45□□□□□ -0.42
TRAF1-202ENST00000540010 KNDC1Q76NI1 1749 aa12.45□□□□□ -0.42
TRAF1-202ENST00000540010 DZIP1LQ8IYY4 767 aaKnown RBP12.45□□□□□ -0.42
TRAF1-202ENST00000540010 PIK3R4Q99570 1358 aa12.45□□□□□ -0.42
TRAF1-202ENST00000540010 SKAP1Q86WV1 359 aa12.44□□□□□ -0.42
TRAF1-202ENST00000540010 COL3A1P02461 1466 aaPredicted RBP12.44□□□□□ -0.42
TRAF1-202ENST00000540010 DCTN1Q14203 1278 aa12.44□□□□□ -0.42
TRAF1-202ENST00000540010 SSH1Q8WYL5 1049 aa12.43□□□□□ -0.42
TRAF1-202ENST00000540010 MAP3K19Q56UN5 1328 aa12.43□□□□□ -0.42
TRAF1-202ENST00000540010 CDK12Q9NYV4 1490 aaPredicted RBP12.43□□□□□ -0.42
TRAF1-202ENST00000540010 NOL8Q76FK4 1167 aaKnown RBP12.43□□□□□ -0.42
TRAF1-202ENST00000540010 FAM83GA6ND36 823 aa12.43□□□□□ -0.42
TRAF1-202ENST00000540010 XPCQ01831 940 aaPredicted RBP12.43□□□□□ -0.42
TRAF1-202ENST00000540010 ZRSR1Q15695 479 aaKnown RBP12.43□□□□□ -0.42
TRAF1-202ENST00000540010 FOXD4L5Q5VV16 416 aaPredicted RBP12.43□□□□□ -0.42
TRAF1-202ENST00000540010 FOXD4L4Q8WXT5 416 aaPredicted RBP12.43□□□□□ -0.42
TRAF1-202ENST00000540010 FGD1P98174 961 aa12.43□□□□□ -0.42
TRAF1-202ENST00000540010 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.42□□□□□ -0.42
TRAF1-202ENST00000540010 TNNQ9UQP3 1299 aa12.42□□□□□ -0.42
TRAF1-202ENST00000540010 ITSN1Q15811 1721 aa12.42□□□□□ -0.42
TRAF1-202ENST00000540010 ANKRD26Q9UPS8 1709 aa12.42□□□□□ -0.42
TRAF1-202ENST00000540010 BRPF3Q9ULD4 1205 aa12.42□□□□□ -0.42
TRAF1-202ENST00000540010 NOB1Q9ULX3 412 aaKnown RBP12.42□□□□□ -0.42
TRAF1-202ENST00000540010 NAP1L2Q9ULW6 460 aaPredicted RBP12.41□□□□□ -0.42
TRAF1-202ENST00000540010 KIF16BQ96L93 1317 aa12.41□□□□□ -0.42
TRAF1-202ENST00000540010 DIP2AQ14689 1571 aa12.41□□□□□ -0.42
TRAF1-202ENST00000540010 FOXO3O43524 673 aa12.41□□□□□ -0.42
TRAF1-202ENST00000540010 NPHP4O75161 1426 aaPredicted RBP12.41□□□□□ -0.42
TRAF1-202ENST00000540010 GOLGA6L4A6NEF3 574 aa12.41□□□□□ -0.42
TRAF1-202ENST00000540010 ANO8Q9HCE9 1232 aaPredicted RBP12.41□□□□□ -0.42
TRAF1-202ENST00000540010 IFT57Q9NWB7 429 aa12.41□□□□□ -0.42
TRAF1-202ENST00000540010 LRRC7Q96NW7 1537 aa12.4□□□□□ -0.42
TRAF1-202ENST00000540010 FLT4P35916 1363 aa12.4□□□□□ -0.42
TRAF1-202ENST00000540010 RLBP1P12271 317 aa12.4□□□□□ -0.42
TRAF1-202ENST00000540010 MCM10Q7L590 875 aa12.4□□□□□ -0.42
TRAF1-202ENST00000540010 ATF7IPQ6VMQ6 1270 aa12.4□□□□□ -0.43
TRAF1-202ENST00000540010 MAP2P11137 1827 aaKnown RBP12.39□□□□□ -0.43
TRAF1-202ENST00000540010 ATF3P18847 181 aa12.39□□□□□ -0.43
TRAF1-202ENST00000540010 TWISTNBQ3B726 338 aaPredicted RBP12.39□□□□□ -0.43
TRAF1-202ENST00000540010 FRAT2O75474 233 aaPredicted RBP12.39□□□□□ -0.43
TRAF1-202ENST00000540010 MVPQ14764 893 aaKnown RBP12.39□□□□□ -0.43
TRAF1-202ENST00000540010 ANKRD45Q5TZF3 282 aa12.39□□□□□ -0.43
TRAF1-202ENST00000540010 SLC4A10Q6U841 1118 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms