RNA–Protein interactions for RNA: ENST00000539449.2

RTN4IP1-204, Transcript of reticulon 4 interacting protein 1, humanhuman

TSL 2 BASIC

Gene RTN4IP1, Length 814 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4IP1-204ENST00000539449 EDC4Q6P2E9 1401 aaKnown RBP12.44□□□□□ -0.42
RTN4IP1-204ENST00000539449 SSH2Q76I76 1423 aa12.44□□□□□ -0.42
RTN4IP1-204ENST00000539449 CGNL1Q0VF96 1302 aa12.43□□□□□ -0.42
RTN4IP1-204ENST00000539449 MORC1Q86VD1 984 aa12.43□□□□□ -0.42
RTN4IP1-204ENST00000539449 NME9Q86XW9 330 aa12.43□□□□□ -0.42
RTN4IP1-204ENST00000539449 PHF8Q9UPP1 1060 aa12.43□□□□□ -0.42
RTN4IP1-204ENST00000539449 USP6P35125 1406 aa12.43□□□□□ -0.42
RTN4IP1-204ENST00000539449 POLR3AO14802 1390 aaPredicted RBP12.43□□□□□ -0.42
RTN4IP1-204ENST00000539449 TTC21BQ7Z4L5 1316 aa12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 FOXO3O43524 673 aa12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 TNNT2P45379 298 aaPredicted RBP12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 C1QBPQ07021 282 aaKnown RBP12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 ESCO1Q5FWF5 840 aa12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 FAM182BQ5T319 152 aa12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 NGDNQ8NEJ9 315 aaKnown RBP12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 CAMKK2Q96RR4 588 aa12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 ZNF692Q9BU19 519 aaPredicted RBP12.42□□□□□ -0.42
RTN4IP1-204ENST00000539449 SPON1Q9HCB6 807 aa12.41□□□□□ -0.42
RTN4IP1-204ENST00000539449 BRD4O60885 1362 aaPredicted RBP12.41□□□□□ -0.42
RTN4IP1-204ENST00000539449 CHD4Q14839 1912 aa12.41□□□□□ -0.42
RTN4IP1-204ENST00000539449 MAP2P11137 1827 aaKnown RBP12.4□□□□□ -0.42
RTN4IP1-204ENST00000539449 FBLN1P23142 703 aa12.4□□□□□ -0.42
RTN4IP1-204ENST00000539449 FAM98CQ17RN3 349 aaKnown RBP12.4□□□□□ -0.42
RTN4IP1-204ENST00000539449 NLRP13Q86W25 1043 aa12.4□□□□□ -0.42
RTN4IP1-204ENST00000539449 RREB1Q92766 1687 aa12.4□□□□□ -0.42
RTN4IP1-204ENST00000539449 CEP350Q5VT06 3117 aa12.4□□□□□ -0.42
RTN4IP1-204ENST00000539449 NSD2O96028 1365 aa12.4□□□□□ -0.42
RTN4IP1-204ENST00000539449 NUP188Q5SRE5 1749 aa12.4□□□□□ -0.43
RTN4IP1-204ENST00000539449 PIK3C2AO00443 1686 aa12.39□□□□□ -0.43
RTN4IP1-204ENST00000539449 KCNQ2O43526 872 aa12.39□□□□□ -0.43
RTN4IP1-204ENST00000539449 PNISRQ8TF01 805 aaKnown RBP12.39□□□□□ -0.43
RTN4IP1-204ENST00000539449 UTRNP46939 3433 aa12.39□□□□□ -0.43
RTN4IP1-204ENST00000539449 FAM9BQ8IZU0 186 aa12.38□□□□□ -0.43
RTN4IP1-204ENST00000539449 SPATA31A3Q5VYP0 1347 aa12.37□□□□□ -0.43
RTN4IP1-204ENST00000539449 TRPM3Q9HCF6 1732 aaPredicted RBP12.37□□□□□ -0.43
RTN4IP1-204ENST00000539449 HAP1P54257 671 aaPredicted RBP12.37□□□□□ -0.43
RTN4IP1-204ENST00000539449 KIF1AQ12756 1690 aa12.37□□□□□ -0.43
RTN4IP1-204ENST00000539449 NRAPQ86VF7 1730 aa12.37□□□□□ -0.43
RTN4IP1-204ENST00000539449 NBPF14Q5TI25 921 aa12.36□□□□□ -0.43
RTN4IP1-204ENST00000539449 ABCA3Q99758 1704 aa12.35□□□□□ -0.43
RTN4IP1-204ENST00000539449 TRIM37O94972 964 aa12.35□□□□□ -0.43
RTN4IP1-204ENST00000539449 MTHFSP49914 203 aa12.35□□□□□ -0.43
RTN4IP1-204ENST00000539449 NUTM2GQ5VZR2 741 aa12.35□□□□□ -0.43
RTN4IP1-204ENST00000539449 OVOS2A0A0J9YW53 1432 aa12.35□□□□□ -0.43
RTN4IP1-204ENST00000539449 OVOS2Q6IE36 1432 aa12.35□□□□□ -0.43
RTN4IP1-204ENST00000539449 TTC21AQ8NDW8 1320 aa12.35□□□□□ -0.43
RTN4IP1-204ENST00000539449 APBA3O96018 575 aa12.34□□□□□ -0.43
RTN4IP1-204ENST00000539449 PSME1Q06323 249 aa12.34□□□□□ -0.43
RTN4IP1-204ENST00000539449 CABLES1Q8TDN4 633 aa12.34□□□□□ -0.43
RTN4IP1-204ENST00000539449 USP54Q70EL1 1684 aa12.34□□□□□ -0.43
RTN4IP1-204ENST00000539449 THSD7AQ9UPZ6 1657 aa12.34□□□□□ -0.43
RTN4IP1-204ENST00000539449 USP31Q70CQ4 1352 aa12.33□□□□□ -0.44
RTN4IP1-204ENST00000539449 PAK3O75914 559 aaPredicted RBP12.33□□□□□ -0.44
RTN4IP1-204ENST00000539449 KRT28Q7Z3Y7 464 aa12.33□□□□□ -0.44
RTN4IP1-204ENST00000539449 COG3Q96JB2 828 aa12.33□□□□□ -0.44
RTN4IP1-204ENST00000539449 FAM83GA6ND36 823 aa12.32□□□□□ -0.44
RTN4IP1-204ENST00000539449 NPM3O75607 178 aaKnown RBP12.32□□□□□ -0.44
RTN4IP1-204ENST00000539449 PLEKHG5O94827 1062 aa12.32□□□□□ -0.44
RTN4IP1-204ENST00000539449 POLKQ9UBT6 870 aa12.32□□□□□ -0.44
RTN4IP1-204ENST00000539449 COL3A1P02461 1466 aaPredicted RBP12.32□□□□□ -0.44
RTN4IP1-204ENST00000539449 ALS2Q96Q42 1657 aa12.32□□□□□ -0.44
RTN4IP1-204ENST00000539449 PEAK1Q9H792 1746 aa12.31□□□□□ -0.44
RTN4IP1-204ENST00000539449 GIGYF1O75420 1035 aaPredicted RBP12.31□□□□□ -0.44
RTN4IP1-204ENST00000539449 RRS1Q15050 365 aaKnown RBP12.31□□□□□ -0.44
RTN4IP1-204ENST00000539449 EMILIN1Q9Y6C2 1016 aa12.31□□□□□ -0.44
RTN4IP1-204ENST00000539449 NLRP6P59044 892 aa12.3□□□□□ -0.44
RTN4IP1-204ENST00000539449 FAM196AQ6ZSG2 479 aa12.3□□□□□ -0.44
RTN4IP1-204ENST00000539449 ABTB2Q8N961 1025 aa12.3□□□□□ -0.44
RTN4IP1-204ENST00000539449 ADAMTS8Q9UP79 889 aa12.3□□□□□ -0.44
RTN4IP1-204ENST00000539449 AATKQ6ZMQ8 1374 aa12.3□□□□□ -0.44
RTN4IP1-204ENST00000539449 TNS3Q68CZ2 1445 aa12.29□□□□□ -0.44
RTN4IP1-204ENST00000539449 SOX12O15370 315 aa12.29□□□□□ -0.44
RTN4IP1-204ENST00000539449 BTG4Q9NY30 223 aa12.29□□□□□ -0.44
RTN4IP1-204ENST00000539449 HNRNPUQ00839 825 aaKnown RBP eCLIP12.28□□□□□ -0.44
RTN4IP1-204ENST00000539449 SPATA31A5Q5VU36 1347 aa12.28□□□□□ -0.44
RTN4IP1-204ENST00000539449 SPATA31A7Q8IWB4 1347 aa12.28□□□□□ -0.44
RTN4IP1-204ENST00000539449 CASZ1Q86V15 1759 aa12.28□□□□□ -0.44
RTN4IP1-204ENST00000539449 SMG6Q86US8 1419 aaKnown RBP12.28□□□□□ -0.44
RTN4IP1-204ENST00000539449 PPM1GO15355 546 aaPredicted RBP12.27□□□□□ -0.45
RTN4IP1-204ENST00000539449 LTN1O94822 1766 aa12.27□□□□□ -0.45
RTN4IP1-204ENST00000539449 COL14A1Q05707 1796 aaKnown RBP12.27□□□□□ -0.45
RTN4IP1-204ENST00000539449 LMOD2Q6P5Q4 547 aa12.26□□□□□ -0.45
RTN4IP1-204ENST00000539449 INSRP06213 1382 aa12.26□□□□□ -0.45
RTN4IP1-204ENST00000539449 NFAT5O94916 1531 aa12.26□□□□□ -0.45
RTN4IP1-204ENST00000539449 CRYBG1Q9Y4K1 1723 aa12.25□□□□□ -0.45
RTN4IP1-204ENST00000539449 WDR43Q15061 677 aaKnown RBP eCLIP12.25□□□□□ -0.45
RTN4IP1-204ENST00000539449 CFAP53Q96M91 514 aa12.25□□□□□ -0.45
RTN4IP1-204ENST00000539449 MAP3K19Q56UN5 1328 aa12.25□□□□□ -0.45
RTN4IP1-204ENST00000539449 SBNO1A3KN83 1393 aa12.25□□□□□ -0.45
RTN4IP1-204ENST00000539449 SLIT3O75094 1523 aa12.25□□□□□ -0.45
RTN4IP1-204ENST00000539449 CCDC146Q8IYE0 955 aa12.24□□□□□ -0.45
RTN4IP1-204ENST00000539449 PHRF1Q9P1Y6 1649 aaKnown RBP12.24□□□□□ -0.45
RTN4IP1-204ENST00000539449 RGPD5Q99666 1765 aa12.23□□□□□ -0.45
RTN4IP1-204ENST00000539449 ARHGEF10O15013 1369 aa12.23□□□□□ -0.45
RTN4IP1-204ENST00000539449 USP19O94966 1318 aa12.23□□□□□ -0.45
RTN4IP1-204ENST00000539449 IL13P35225 146 aa12.23□□□□□ -0.45
RTN4IP1-204ENST00000539449 SYT17Q9BSW7 474 aa12.23□□□□□ -0.45
RTN4IP1-204ENST00000539449 DIAPH1O60610 1272 aaKnown RBP12.22□□□□□ -0.45
RTN4IP1-204ENST00000539449 PTGER2P43116 358 aa12.22□□□□□ -0.45
RTN4IP1-204ENST00000539449 HSP90AB2PQ58FF8 381 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms