RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 CCDC184Q52MB2 194 aa8.73□□□□□ -1.01
USP28-207ENST00000538475 ROCK1Q13464 1354 aa8.73□□□□□ -1.01
USP28-207ENST00000538475 NDUFV2P19404 249 aa8.72□□□□□ -1.01
USP28-207ENST00000538475 MSS51Q4VC12 460 aa8.72□□□□□ -1.01
USP28-207ENST00000538475 Q6ZNB5 142 aa8.72□□□□□ -1.01
USP28-207ENST00000538475 PNISRQ8TF01 805 aaKnown RBP8.72□□□□□ -1.01
USP28-207ENST00000538475 TBC1D2Q9BYX2 928 aa8.72□□□□□ -1.01
USP28-207ENST00000538475 PRDM9Q9NQV7 894 aa8.72□□□□□ -1.01
USP28-207ENST00000538475 PTPRKQ15262 1439 aa8.71□□□□□ -1.01
USP28-207ENST00000538475 KDM5CP41229 1560 aa8.71□□□□□ -1.02
USP28-207ENST00000538475 C6orf229H3BNL8 230 aa8.71□□□□□ -1.02
USP28-207ENST00000538475 RALBP1Q15311 655 aa8.71□□□□□ -1.02
USP28-207ENST00000538475 BRPF3Q9ULD4 1205 aa8.71□□□□□ -1.02
USP28-207ENST00000538475 FCF1Q9Y324 198 aaKnown RBP8.71□□□□□ -1.02
USP28-207ENST00000538475 KIF7Q2M1P5 1343 aa8.71□□□□□ -1.02
USP28-207ENST00000538475 MTUS2Q5JR59 1369 aa8.71□□□□□ -1.02
USP28-207ENST00000538475 KIF15Q9NS87 1388 aa8.71□□□□□ -1.02
USP28-207ENST00000538475 DENND4BO75064 1496 aaPredicted RBP8.7□□□□□ -1.02
USP28-207ENST00000538475 MOXD2PA6NHM9 499 aa8.7□□□□□ -1.02
USP28-207ENST00000538475 SYMPKQ92797 1274 aaKnown RBP8.7□□□□□ -1.02
USP28-207ENST00000538475 FRAT1Q92837 279 aaPredicted RBP8.7□□□□□ -1.02
USP28-207ENST00000538475 ISY1Q9ULR0 285 aaKnown RBP8.7□□□□□ -1.02
USP28-207ENST00000538475 LAS1LQ9Y4W2 734 aaKnown RBP8.7□□□□□ -1.02
USP28-207ENST00000538475 BCORL1Q5H9F3 1711 aa8.7□□□□□ -1.02
USP28-207ENST00000538475 ANKRD30BQ9BXX2 1392 aa8.7□□□□□ -1.02
USP28-207ENST00000538475 GRIN2BQ13224 1484 aa8.7□□□□□ -1.02
USP28-207ENST00000538475 MBD5Q9P267 1494 aa8.7□□□□□ -1.02
USP28-207ENST00000538475 RCAN3Q9UKA8 241 aa8.69□□□□□ -1.02
USP28-207ENST00000538475 CENPJQ9HC77 1338 aaPredicted RBP8.69□□□□□ -1.02
USP28-207ENST00000538475 ADGBQ8N7X0 1667 aa8.69□□□□□ -1.02
USP28-207ENST00000538475 PCDHGC3Q9UN70 934 aa8.68□□□□□ -1.02
USP28-207ENST00000538475 ZMYM3Q14202 1370 aa8.68□□□□□ -1.02
USP28-207ENST00000538475 GAPVD1Q14C86 1478 aa8.68□□□□□ -1.02
USP28-207ENST00000538475 ARHGEF12Q9NZN5 1544 aa8.68□□□□□ -1.02
USP28-207ENST00000538475 ZBTB24O43167 697 aaPredicted RBP8.67□□□□□ -1.02
USP28-207ENST00000538475 GFRA3O60609 400 aa8.67□□□□□ -1.02
USP28-207ENST00000538475 UHRF1BP1Q6BDS2 1440 aa8.67□□□□□ -1.02
USP28-207ENST00000538475 LIAT1Q6ZQX7 453 aa8.67□□□□□ -1.02
USP28-207ENST00000538475 CENPQQ7L2Z9 268 aaPredicted RBP8.67□□□□□ -1.02
USP28-207ENST00000538475 RETREG3Q86VR2 466 aa8.67□□□□□ -1.02
USP28-207ENST00000538475 L3MBTL2Q969R5 705 aa8.67□□□□□ -1.02
USP28-207ENST00000538475 MYBBP1AQ9BQG0 1328 aaKnown RBP8.67□□□□□ -1.02
USP28-207ENST00000538475 DNMT1P26358 1616 aaKnown RBP8.66□□□□□ -1.02
USP28-207ENST00000538475 ABCA10Q8WWZ4 1543 aa8.66□□□□□ -1.02
USP28-207ENST00000538475 MMP16P51512 607 aa8.66□□□□□ -1.02
USP28-207ENST00000538475 PLA2G2CQ5R387 149 aa8.66□□□□□ -1.02
USP28-207ENST00000538475 SPRYD7Q5W111 196 aa8.66□□□□□ -1.02
USP28-207ENST00000538475 NPM2Q86SE8 214 aaKnown RBP8.66□□□□□ -1.02
USP28-207ENST00000538475 CCDC24Q8N4L8 307 aa8.66□□□□□ -1.02
USP28-207ENST00000538475 TMC1Q8TDI8 760 aa8.66□□□□□ -1.02
USP28-207ENST00000538475 MPHOSPH9Q99550 1183 aa8.66□□□□□ -1.02
USP28-207ENST00000538475 EIF3AQ14152 1382 aaKnown RBP8.65□□□□□ -1.02
USP28-207ENST00000538475 MTMR2Q13614 643 aa8.65□□□□□ -1.02
USP28-207ENST00000538475 LAPTM4AQ15012 233 aa8.65□□□□□ -1.02
USP28-207ENST00000538475 RSBN1LQ6PCB5 846 aaPredicted RBP8.65□□□□□ -1.02
USP28-207ENST00000538475 RIC3Q7Z5B4 369 aa8.65□□□□□ -1.02
USP28-207ENST00000538475 ZNF598Q86UK7 904 aaKnown RBP8.65□□□□□ -1.02
USP28-207ENST00000538475 EMID1Q96A84 441 aaPredicted RBP8.65□□□□□ -1.02
USP28-207ENST00000538475 GPBP1L1Q9HC44 474 aaPredicted RBP8.65□□□□□ -1.02
USP28-207ENST00000538475 RALGAPBQ86X10 1494 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 FHOD3Q2V2M9 1422 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 DXOO77932 396 aaKnown RBP8.64□□□□□ -1.03
USP28-207ENST00000538475 CD2BP2O95400 341 aaKnown RBP8.64□□□□□ -1.03
USP28-207ENST00000538475 JUNDP17535 347 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 GJA5P36382 358 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 BECN1Q14457 450 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 HSP90AA2PQ14568 343 aaPredicted RBP8.64□□□□□ -1.03
USP28-207ENST00000538475 CSPP1Q1MSJ5 1256 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 TPRNQ4KMQ1 711 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 ZNF697Q5TEC3 545 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 EXOC6Q8TAG9 804 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 KDM4CQ9H3R0 1056 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 PDZRN3Q9UPQ7 1066 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 LAMC1P11047 1609 aa8.64□□□□□ -1.03
USP28-207ENST00000538475 KDM2BQ8NHM5 1336 aa8.63□□□□□ -1.03
USP28-207ENST00000538475 SPDYE5A6NIY4 337 aa8.63□□□□□ -1.03
USP28-207ENST00000538475 SPTLC1O15269 473 aa8.63□□□□□ -1.03
USP28-207ENST00000538475 HSP90AA1P07900 732 aaKnown RBP8.63□□□□□ -1.03
USP28-207ENST00000538475 RPIAP49247 311 aa8.63□□□□□ -1.03
USP28-207ENST00000538475 CLASP1Q7Z460 1538 aa8.63□□□□□ -1.03
USP28-207ENST00000538475 BLMP54132 1417 aaPredicted RBP8.63□□□□□ -1.03
USP28-207ENST00000538475 DNMBPQ6XZF7 1577 aa8.62□□□□□ -1.03
USP28-207ENST00000538475 MYSM1Q5VVJ2 828 aa8.62□□□□□ -1.03
USP28-207ENST00000538475 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.62□□□□□ -1.03
USP28-207ENST00000538475 PRR7Q8TB68 274 aa8.62□□□□□ -1.03
USP28-207ENST00000538475 PNNQ9H307 717 aaKnown RBP8.62□□□□□ -1.03
USP28-207ENST00000538475 ATP1B4Q9UN42 357 aaPredicted RBP8.62□□□□□ -1.03
USP28-207ENST00000538475 PCDHB15Q9Y5E8 787 aa8.62□□□□□ -1.03
USP28-207ENST00000538475 KDM6BO15054 1643 aa8.62□□□□□ -1.03
USP28-207ENST00000538475 TPM2P07951 284 aa8.61□□□□□ -1.03
USP28-207ENST00000538475 TERF1P54274 439 aa8.61□□□□□ -1.03
USP28-207ENST00000538475 AAMPQ13685 434 aa8.61□□□□□ -1.03
USP28-207ENST00000538475 NLRP13Q86W25 1043 aa8.61□□□□□ -1.03
USP28-207ENST00000538475 ZMYND15Q9H091 742 aa8.61□□□□□ -1.03
USP28-207ENST00000538475 ZBTB3Q9H5J0 574 aa8.61□□□□□ -1.03
USP28-207ENST00000538475 SCAPERQ9BY12 1400 aa8.61□□□□□ -1.03
USP28-207ENST00000538475 USP47Q96K76 1375 aa8.61□□□□□ -1.03
USP28-207ENST00000538475 NUTM2BA6NNL0 878 aaPredicted RBP8.6□□□□□ -1.03
USP28-207ENST00000538475 NUTM2EB1AL46 878 aaPredicted RBP8.6□□□□□ -1.03
USP28-207ENST00000538475 NUTM2DQ5VT03 806 aaPredicted RBP8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms