RNA–Protein interactions for RNA: ENST00000534356.1

CASP4-213, Transcript of caspase 4, humanhuman

TSL 1 (best)

Gene CASP4, Length 771 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4-213ENST00000534356 KCTD15Q96SI1 283 aaPredicted RBP12.61□□□□□ -0.39
CASP4-213ENST00000534356 SERPINA10Q9UK55 444 aa12.61□□□□□ -0.39
CASP4-213ENST00000534356 PHTF2Q8N3S3 785 aa12.6□□□□□ -0.39
CASP4-213ENST00000534356 CCDC97Q96F63 343 aaPredicted RBP12.6□□□□□ -0.39
CASP4-213ENST00000534356 ARID3AQ99856 593 aa12.6□□□□□ -0.39
CASP4-213ENST00000534356 GRM5P41594 1212 aa12.59□□□□□ -0.39
CASP4-213ENST00000534356 SLFNL1Q499Z3 407 aa12.59□□□□□ -0.39
CASP4-213ENST00000534356 ESPNB1AK53 854 aa12.58□□□□□ -0.4
CASP4-213ENST00000534356 TBC1D9Q6ZT07 1266 aa12.58□□□□□ -0.4
CASP4-213ENST00000534356 ALDH1A1P00352 501 aa12.57□□□□□ -0.4
CASP4-213ENST00000534356 RNF135Q8IUD6 432 aa12.57□□□□□ -0.4
CASP4-213ENST00000534356 SNIP1Q8TAD8 396 aaKnown RBP12.57□□□□□ -0.4
CASP4-213ENST00000534356 PPP1R12CQ9BZL4 782 aa12.57□□□□□ -0.4
CASP4-213ENST00000534356 TFIP11Q9UBB9 837 aaKnown RBP12.57□□□□□ -0.4
CASP4-213ENST00000534356 ADH1CP00326 375 aa12.56□□□□□ -0.4
CASP4-213ENST00000534356 FSHRP23945 695 aa12.56□□□□□ -0.4
CASP4-213ENST00000534356 RAB15P59190 212 aa12.56□□□□□ -0.4
CASP4-213ENST00000534356 TSGA10IPQ3SY00 556 aa12.56□□□□□ -0.4
CASP4-213ENST00000534356 INTS6LQ5JSJ4 861 aaKnown RBP12.56□□□□□ -0.4
CASP4-213ENST00000534356 PALM3A6NDB9 673 aaPredicted RBP12.55□□□□□ -0.4
CASP4-213ENST00000534356 PRR20EP86478 221 aa12.55□□□□□ -0.4
CASP4-213ENST00000534356 PRR20CP86479 221 aa12.55□□□□□ -0.4
CASP4-213ENST00000534356 PRR20DP86480 221 aa12.55□□□□□ -0.4
CASP4-213ENST00000534356 PRR20BP86481 221 aa12.55□□□□□ -0.4
CASP4-213ENST00000534356 PRR20AP86496 221 aa12.55□□□□□ -0.4
CASP4-213ENST00000534356 CYP4X1Q8N118 509 aa12.55□□□□□ -0.4
CASP4-213ENST00000534356 TOR4AQ9NXH8 423 aa12.55□□□□□ -0.4
CASP4-213ENST00000534356 TTC24A2A3L6 582 aaPredicted RBP12.54□□□□□ -0.4
CASP4-213ENST00000534356 J3QL48 77 aa12.54□□□□□ -0.4
CASP4-213ENST00000534356 SKIP12755 728 aa12.54□□□□□ -0.4
CASP4-213ENST00000534356 CCDC85AQ96PX6 553 aaPredicted RBP12.54□□□□□ -0.4
CASP4-213ENST00000534356 ATP9BO43861 1147 aa12.53□□□□□ -0.4
CASP4-213ENST00000534356 CFAP70Q5T0N1 1121 aa12.53□□□□□ -0.4
CASP4-213ENST00000534356 RNF20Q5VTR2 975 aa12.53□□□□□ -0.4
CASP4-213ENST00000534356 SEPT12Q8IYM1 358 aa12.53□□□□□ -0.4
CASP4-213ENST00000534356 NFATC2IPQ8NCF5 419 aa12.53□□□□□ -0.4
CASP4-213ENST00000534356 CHIC2Q9UKJ5 165 aa12.53□□□□□ -0.4
CASP4-213ENST00000534356 NR5A1Q13285 461 aa12.52□□□□□ -0.41
CASP4-213ENST00000534356 PLPP7Q8NBV4 271 aa12.52□□□□□ -0.41
CASP4-213ENST00000534356 NR3C2P08235 984 aa12.51□□□□□ -0.41
CASP4-213ENST00000534356 WASF2Q9Y6W5 498 aa12.51□□□□□ -0.41
CASP4-213ENST00000534356 ERVH48-1M5A8F1 160 aa12.5□□□□□ -0.41
CASP4-213ENST00000534356 PDZRN3Q9UPQ7 1066 aa12.5□□□□□ -0.41
CASP4-213ENST00000534356 MAFBQ9Y5Q3 323 aaPredicted RBP12.5□□□□□ -0.41
CASP4-213ENST00000534356 SMPD1P17405 629 aa12.49□□□□□ -0.41
CASP4-213ENST00000534356 RFX1P22670 979 aa12.49□□□□□ -0.41
CASP4-213ENST00000534356 LMOD1P29536 600 aaPredicted RBP12.49□□□□□ -0.41
CASP4-213ENST00000534356 TRAF7Q6Q0C0 670 aa12.49□□□□□ -0.41
CASP4-213ENST00000534356 CDCA7Q9BWT1 371 aaPredicted RBP12.49□□□□□ -0.41
CASP4-213ENST00000534356 DOLKQ9UPQ8 538 aa12.49□□□□□ -0.41
CASP4-213ENST00000534356 PCDHB11Q9Y5F2 797 aa12.49□□□□□ -0.41
CASP4-213ENST00000534356 USP17L5A8MUK1 530 aa12.48□□□□□ -0.41
CASP4-213ENST00000534356 NNTQ13423 1086 aa12.48□□□□□ -0.41
CASP4-213ENST00000534356 MAP7D1Q3KQU3 841 aa12.48□□□□□ -0.41
CASP4-213ENST00000534356 CCDC116Q8IYX3 515 aa12.48□□□□□ -0.41
CASP4-213ENST00000534356 DEPDC4Q8N2C3 294 aa12.48□□□□□ -0.41
CASP4-213ENST00000534356 TMPRSS4Q9NRS4 437 aa12.47□□□□□ -0.41
CASP4-213ENST00000534356 USP17L3A6NCW0 530 aa12.46□□□□□ -0.41
CASP4-213ENST00000534356 USP17L4A6NCW7 530 aa12.46□□□□□ -0.41
CASP4-213ENST00000534356 DHX9Q08211 1270 aaKnown RBP12.46□□□□□ -0.41
CASP4-213ENST00000534356 PPP1R26Q5T8A7 1209 aaPredicted RBP12.46□□□□□ -0.41
CASP4-213ENST00000534356 USP17L2Q6R6M4 530 aa12.46□□□□□ -0.41
CASP4-213ENST00000534356 USP17L1Q7RTZ2 530 aa12.46□□□□□ -0.41
CASP4-213ENST00000534356 CCDC125Q86Z20 511 aa12.46□□□□□ -0.41
CASP4-213ENST00000534356 NCOA4Q13772 614 aa12.45□□□□□ -0.42
CASP4-213ENST00000534356 OXLD1Q5BKU9 147 aa12.45□□□□□ -0.42
CASP4-213ENST00000534356 PLEKHM2Q8IWE5 1019 aa12.45□□□□□ -0.42
CASP4-213ENST00000534356 LZTS3O60299 673 aaPredicted RBP12.42□□□□□ -0.42
CASP4-213ENST00000534356 SCTRP47872 440 aa12.42□□□□□ -0.42
CASP4-213ENST00000534356 ZNF784Q8NCA9 323 aaPredicted RBP12.42□□□□□ -0.42
CASP4-213ENST00000534356 HPS1Q92902 700 aa12.42□□□□□ -0.42
CASP4-213ENST00000534356 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.41□□□□□ -0.42
CASP4-213ENST00000534356 SRPK2P78362 688 aaKnown RBP12.41□□□□□ -0.42
CASP4-213ENST00000534356 EML3Q32P44 896 aa12.41□□□□□ -0.42
CASP4-213ENST00000534356 KLF16Q9BXK1 252 aaPredicted RBP12.41□□□□□ -0.42
CASP4-213ENST00000534356 CYLDQ9NQC7 956 aa12.41□□□□□ -0.42
CASP4-213ENST00000534356 EMILIN1Q9Y6C2 1016 aa12.41□□□□□ -0.42
CASP4-213ENST00000534356 GFRA3O60609 400 aa12.4□□□□□ -0.42
CASP4-213ENST00000534356 CDCA8Q53HL2 280 aa12.4□□□□□ -0.42
CASP4-213ENST00000534356 KANK4Q5T7N3 995 aaPredicted RBP12.4□□□□□ -0.42
CASP4-213ENST00000534356 LILRA1O75019 489 aa12.39□□□□□ -0.43
CASP4-213ENST00000534356 WDR4P57081 412 aaKnown RBP12.39□□□□□ -0.43
CASP4-213ENST00000534356 ERVK-9P63128 1117 aa12.39□□□□□ -0.43
CASP4-213ENST00000534356 USP4Q13107 963 aa12.39□□□□□ -0.43
CASP4-213ENST00000534356 ITPKCQ96DU7 683 aa12.39□□□□□ -0.43
CASP4-213ENST00000534356 PGPEP1Q9NXJ5 209 aa12.39□□□□□ -0.43
CASP4-213ENST00000534356 MKRN1Q9UHC7 482 aaKnown RBP12.39□□□□□ -0.43
CASP4-213ENST00000534356 FAM187AA6NFU0 413 aa12.38□□□□□ -0.43
CASP4-213ENST00000534356 MYT1Q01538 1121 aa12.38□□□□□ -0.43
CASP4-213ENST00000534356 CC2D2BQ6DHV5 1058 aa12.38□□□□□ -0.43
CASP4-213ENST00000534356 ZFAND3Q9H8U3 227 aa12.38□□□□□ -0.43
CASP4-213ENST00000534356 VRTNQ9H8Y1 702 aa12.38□□□□□ -0.43
CASP4-213ENST00000534356 ZIC2O95409 532 aaPredicted RBP12.37□□□□□ -0.43
CASP4-213ENST00000534356 TIMP2P16035 220 aa12.37□□□□□ -0.43
CASP4-213ENST00000534356 ADD1P35611 737 aaKnown RBP12.37□□□□□ -0.43
CASP4-213ENST00000534356 PBXIP1Q96AQ6 731 aa12.37□□□□□ -0.43
CASP4-213ENST00000534356 NOD1Q9Y239 953 aa12.37□□□□□ -0.43
CASP4-213ENST00000534356 SIRT1Q96EB6 747 aa12.36□□□□□ -0.43
CASP4-213ENST00000534356 NRG2O14511 850 aaPredicted RBP12.35□□□□□ -0.43
CASP4-213ENST00000534356 MYCP01106 439 aaPredicted RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms