RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 HIP1O00291 1037 aa17.77■□□□□ 0.44
PCDHA9-202ENST00000532602 IKQ13123 557 aaPredicted RBP17.77■□□□□ 0.44
PCDHA9-202ENST00000532602 CDC45O75419 566 aa17.77■□□□□ 0.44
PCDHA9-202ENST00000532602 CHMP5Q9NZZ3 219 aa17.77■□□□□ 0.44
PCDHA9-202ENST00000532602 THOC2Q8NI27 1593 aaKnown RBP17.77■□□□□ 0.43
PCDHA9-202ENST00000532602 FOXO3O43524 673 aa17.76■□□□□ 0.43
PCDHA9-202ENST00000532602 PDZRN3Q9UPQ7 1066 aa17.76■□□□□ 0.43
PCDHA9-202ENST00000532602 CCDC61Q9Y6R9 512 aa17.76■□□□□ 0.43
PCDHA9-202ENST00000532602 IDI1Q13907 227 aa17.76■□□□□ 0.43
PCDHA9-202ENST00000532602 KRI1Q8N9T8 703 aaKnown RBP17.75■□□□□ 0.43
PCDHA9-202ENST00000532602 CCAR2Q8N163 923 aaKnown RBP17.75■□□□□ 0.43
PCDHA9-202ENST00000532602 PTCD1O75127 700 aaKnown RBP17.74■□□□□ 0.43
PCDHA9-202ENST00000532602 GNAT3A8MTJ3 354 aa17.74■□□□□ 0.43
PCDHA9-202ENST00000532602 GPS2Q13227 327 aa17.74■□□□□ 0.43
PCDHA9-202ENST00000532602 BIVM-ERCC5R4GMW8 1640 aa17.74■□□□□ 0.43
PCDHA9-202ENST00000532602 DENND4BO75064 1496 aaPredicted RBP17.73■□□□□ 0.43
PCDHA9-202ENST00000532602 SASS6Q6UVJ0 657 aa17.73■□□□□ 0.43
PCDHA9-202ENST00000532602 CCDC158Q5M9N0 1113 aa17.73■□□□□ 0.43
PCDHA9-202ENST00000532602 CCAR1Q8IX12 1150 aaKnown RBP17.73■□□□□ 0.43
PCDHA9-202ENST00000532602 NOS1P29475 1434 aa17.72■□□□□ 0.43
PCDHA9-202ENST00000532602 SRCIN1Q9C0H9 1055 aa17.72■□□□□ 0.43
PCDHA9-202ENST00000532602 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.72■□□□□ 0.43
PCDHA9-202ENST00000532602 ATP2B2Q01814 1243 aa17.71■□□□□ 0.43
PCDHA9-202ENST00000532602 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.71■□□□□ 0.43
PCDHA9-202ENST00000532602 EMILIN1Q9Y6C2 1016 aa17.71■□□□□ 0.43
PCDHA9-202ENST00000532602 RBM5P52756 815 aaKnown RBP eCLIP17.7■□□□□ 0.42
PCDHA9-202ENST00000532602 CCT4P50991 539 aaKnown RBP17.7■□□□□ 0.42
PCDHA9-202ENST00000532602 CCDC57Q2TAC2 916 aa17.7■□□□□ 0.42
PCDHA9-202ENST00000532602 MPHOSPH8Q99549 860 aa17.7■□□□□ 0.42
PCDHA9-202ENST00000532602 CT47A1Q5JQC4 288 aaPredicted RBP17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 TMPOP42166 694 aaKnown RBP17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 KCNH5Q8NCM2 988 aa17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 FKBP4Q02790 459 aaKnown RBP eCLIP17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 C11orf95C9JLR9 678 aaPredicted RBP17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 PHF8Q9UPP1 1060 aa17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 NFE2L2Q16236 605 aa17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 MPRIPQ6WCQ1 1025 aa17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 WDR63Q8IWG1 891 aa17.69■□□□□ 0.42
PCDHA9-202ENST00000532602 RAPGEF6Q8TEU7 1601 aa17.68■□□□□ 0.42
PCDHA9-202ENST00000532602 LRRCC1Q9C099 1032 aa17.68■□□□□ 0.42
PCDHA9-202ENST00000532602 FCHSD2O94868 740 aa17.68■□□□□ 0.42
PCDHA9-202ENST00000532602 ATP2B1P20020 1258 aa17.68■□□□□ 0.42
PCDHA9-202ENST00000532602 TNNT3P45378 269 aaPredicted RBP17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 NACAP1Q9BZK3 213 aa17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 WASLO00401 505 aaPredicted RBP17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 PDCP20941 246 aa17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 ODF2Q5BJF6 829 aa17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 CT47B1P0C2W7 299 aaPredicted RBP17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 STK3Q13188 491 aa17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 AACSQ86V21 672 aa17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 TMOD3Q9NYL9 352 aa17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 GCC1Q96CN9 775 aa17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 NAT10Q9H0A0 1025 aaKnown RBP17.67■□□□□ 0.42
PCDHA9-202ENST00000532602 OFD1O75665 1012 aa17.66■□□□□ 0.42
PCDHA9-202ENST00000532602 OLFM4Q6UX06 510 aa17.66■□□□□ 0.42
PCDHA9-202ENST00000532602 EPS15P42566 896 aa17.66■□□□□ 0.42
PCDHA9-202ENST00000532602 ATF7IPQ6VMQ6 1270 aa17.66■□□□□ 0.42
PCDHA9-202ENST00000532602 IL1RAPL2Q9NP60 686 aa17.66■□□□□ 0.42
PCDHA9-202ENST00000532602 SRGAP3O43295 1099 aa17.66■□□□□ 0.42
PCDHA9-202ENST00000532602 MCM2P49736 904 aa17.66■□□□□ 0.42
PCDHA9-202ENST00000532602 HOMER1Q86YM7 354 aa17.66■□□□□ 0.42
PCDHA9-202ENST00000532602 FBLN1P23142 703 aa17.65■□□□□ 0.42
PCDHA9-202ENST00000532602 WWC2Q6AWC2 1192 aa17.65■□□□□ 0.42
PCDHA9-202ENST00000532602 KRT28Q7Z3Y7 464 aa17.65■□□□□ 0.42
PCDHA9-202ENST00000532602 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.65■□□□□ 0.42
PCDHA9-202ENST00000532602 SDF4Q9BRK5 362 aa17.65■□□□□ 0.42
PCDHA9-202ENST00000532602 TXLNAP40222 546 aa17.64■□□□□ 0.41
PCDHA9-202ENST00000532602 DUSP27Q5VZP5 1158 aa17.64■□□□□ 0.41
PCDHA9-202ENST00000532602 ZSCAN25Q6NSZ9 544 aa17.64■□□□□ 0.41
PCDHA9-202ENST00000532602 NEK4P51957 841 aa17.63■□□□□ 0.41
PCDHA9-202ENST00000532602 ASXL2Q76L83 1435 aa17.63■□□□□ 0.41
PCDHA9-202ENST00000532602 MVPQ14764 893 aaKnown RBP17.63■□□□□ 0.41
PCDHA9-202ENST00000532602 PPP6R1Q9UPN7 881 aa17.63■□□□□ 0.41
PCDHA9-202ENST00000532602 NCOA1Q15788 1441 aa17.63■□□□□ 0.41
PCDHA9-202ENST00000532602 PDE3AQ14432 1141 aa17.63■□□□□ 0.41
PCDHA9-202ENST00000532602 NGLY1Q96IV0 654 aa17.63■□□□□ 0.41
PCDHA9-202ENST00000532602 CEBPZQ03701 1054 aaKnown RBP17.63■□□□□ 0.41
PCDHA9-202ENST00000532602 ZNF592Q92610 1267 aa17.62■□□□□ 0.41
PCDHA9-202ENST00000532602 CDK5RAP3Q96JB5 506 aa17.62■□□□□ 0.41
PCDHA9-202ENST00000532602 GSE1Q14687 1217 aa17.62■□□□□ 0.41
PCDHA9-202ENST00000532602 MYD88Q99836 296 aa17.62■□□□□ 0.41
PCDHA9-202ENST00000532602 NUTM1Q86Y26 1132 aa17.62■□□□□ 0.41
PCDHA9-202ENST00000532602 PEG3Q9GZU2 1588 aa17.62■□□□□ 0.41
PCDHA9-202ENST00000532602 STARD3NLO95772 234 aa17.62■□□□□ 0.41
PCDHA9-202ENST00000532602 CHRNA2Q15822 529 aa17.62■□□□□ 0.41
PCDHA9-202ENST00000532602 TMEM57Q8N5G2 664 aa17.61■□□□□ 0.41
PCDHA9-202ENST00000532602 NAP1L1P55209 391 aaKnown RBP17.61■□□□□ 0.41
PCDHA9-202ENST00000532602 TMEM132AQ24JP5 1023 aa17.6■□□□□ 0.41
PCDHA9-202ENST00000532602 KIF21AQ7Z4S6 1674 aa17.6■□□□□ 0.41
PCDHA9-202ENST00000532602 CDR1P51861 262 aa17.6■□□□□ 0.41
PCDHA9-202ENST00000532602 CWC27Q6UX04 472 aaKnown RBP17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 KDM5BQ9UGL1 1544 aa17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 RDXP35241 583 aaKnown RBP17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 TRIM22Q8IYM9 498 aa17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 CTTNBP2Q8WZ74 1663 aa17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 SMARCA5O60264 1052 aaPredicted RBP17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 PIP4K2AP48426 406 aaPredicted RBP17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 CCDC173Q0VFZ6 552 aa17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 BCL11BQ9C0K0 894 aaPredicted RBP17.59■□□□□ 0.41
PCDHA9-202ENST00000532602 JMYQ8N9B5 988 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms