RNA–Protein interactions for RNA: ENST00000530567.1

CAPN1-220, Transcript of calpain 1, humanhuman

TSL 2

Gene CAPN1, Length 1,415 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-220ENST00000530567 AXIN2Q9Y2T1 843 aa29.11■■■□□ 2.25
CAPN1-220ENST00000530567 UNC5CLQ8IV45 518 aa29.1■■■□□ 2.25
CAPN1-220ENST00000530567 COL5A2P05997 1499 aaPredicted RBP29.1■■■□□ 2.25
CAPN1-220ENST00000530567 MAP2P11137 1827 aaKnown RBP29.09■■■□□ 2.25
CAPN1-220ENST00000530567 TNNT2P45379 298 aaPredicted RBP29.09■■■□□ 2.25
CAPN1-220ENST00000530567 ATRNO75882 1429 aa29.08■■■□□ 2.25
CAPN1-220ENST00000530567 ZNF772Q68DY9 489 aaPredicted RBP29.08■■■□□ 2.25
CAPN1-220ENST00000530567 RTL1A6NKG5 1358 aa29.07■■■□□ 2.24
CAPN1-220ENST00000530567 EMILIN1Q9Y6C2 1016 aa29.06■■■□□ 2.24
CAPN1-220ENST00000530567 SMG6Q86US8 1419 aaKnown RBP29.06■■■□□ 2.24
CAPN1-220ENST00000530567 CNGB1Q14028 1251 aaPredicted RBP29.05■■■□□ 2.24
CAPN1-220ENST00000530567 IP6K1Q92551 441 aa29.05■■■□□ 2.24
CAPN1-220ENST00000530567 POLKQ9UBT6 870 aa29.05■■■□□ 2.24
CAPN1-220ENST00000530567 KIF24Q5T7B8 1368 aa29.05■■■□□ 2.24
CAPN1-220ENST00000530567 BLMP54132 1417 aaPredicted RBP29.04■■■□□ 2.24
CAPN1-220ENST00000530567 POTEAQ6S8J7 498 aa29.04■■■□□ 2.24
CAPN1-220ENST00000530567 HOXC9P31274 260 aa29.03■■■□□ 2.24
CAPN1-220ENST00000530567 AMPHP49418 695 aa29.03■■■□□ 2.24
CAPN1-220ENST00000530567 FLT4P35916 1363 aa29.02■■■□□ 2.24
CAPN1-220ENST00000530567 TRPC5Q9UL62 973 aaPredicted RBP29.02■■■□□ 2.24
CAPN1-220ENST00000530567 VPS72Q15906 364 aa29.01■■■□□ 2.23
CAPN1-220ENST00000530567 QTRT2Q9H974 415 aaKnown RBP29.01■■■□□ 2.23
CAPN1-220ENST00000530567 STRN4Q9NRL3 753 aa29.01■■■□□ 2.23
CAPN1-220ENST00000530567 PARD3Q8TEW0 1356 aa29.01■■■□□ 2.23
CAPN1-220ENST00000530567 GLI3P10071 1580 aa28.99■■■□□ 2.23
CAPN1-220ENST00000530567 ERBB3P21860 1342 aa28.99■■■□□ 2.23
CAPN1-220ENST00000530567 LARP1Q6PKG0 1096 aaKnown RBP28.98■■■□□ 2.23
CAPN1-220ENST00000530567 CDK12Q9NYV4 1490 aaPredicted RBP28.97■■■□□ 2.23
CAPN1-220ENST00000530567 INSRP06213 1382 aa28.97■■■□□ 2.23
CAPN1-220ENST00000530567 HSP90AB2PQ58FF8 381 aa28.97■■■□□ 2.23
CAPN1-220ENST00000530567 WDR17Q8IZU2 1322 aa28.96■■■□□ 2.23
CAPN1-220ENST00000530567 EVA1CP58658 441 aa28.96■■■□□ 2.23
CAPN1-220ENST00000530567 SPATA31A5Q5VU36 1347 aa28.95■■■□□ 2.23
CAPN1-220ENST00000530567 SPATA31A7Q8IWB4 1347 aa28.95■■■□□ 2.23
CAPN1-220ENST00000530567 PPM1GO15355 546 aaPredicted RBP28.95■■■□□ 2.23
CAPN1-220ENST00000530567 CRB1P82279 1406 aa28.95■■■□□ 2.22
CAPN1-220ENST00000530567 ANKRD24Q8TF21 1146 aa28.94■■■□□ 2.22
CAPN1-220ENST00000530567 GJD4Q96KN9 370 aaPredicted RBP28.94■■■□□ 2.22
CAPN1-220ENST00000530567 FAM208AQ9UK61 1670 aaKnown RBP28.93■■■□□ 2.22
CAPN1-220ENST00000530567 SPATA31A1Q5TZJ5 1347 aa28.92■■■□□ 2.22
CAPN1-220ENST00000530567 MTHFSP49914 203 aa28.91■■■□□ 2.22
CAPN1-220ENST00000530567 LTV1Q96GA3 475 aaPredicted RBP28.91■■■□□ 2.22
CAPN1-220ENST00000530567 PPP2R1AP30153 589 aa28.9■■■□□ 2.22
CAPN1-220ENST00000530567 RBM6P78332 1123 aaKnown RBP28.9■■■□□ 2.22
CAPN1-220ENST00000530567 CCDC9Q9Y3X0 531 aaKnown RBP28.9■■■□□ 2.22
CAPN1-220ENST00000530567 RGPD2P0DJD1 1756 aa28.9■■■□□ 2.22
CAPN1-220ENST00000530567 CSB-PGBD3P0DP91 1061 aa28.89■■■□□ 2.22
CAPN1-220ENST00000530567 RXRBP28702 533 aa28.88■■■□□ 2.21
CAPN1-220ENST00000530567 TOM1L2Q6ZVM7 507 aa28.88■■■□□ 2.21
CAPN1-220ENST00000530567 RALBP1Q15311 655 aa28.87■■■□□ 2.21
CAPN1-220ENST00000530567 CARD10Q9BWT7 1032 aa28.86■■■□□ 2.21
CAPN1-220ENST00000530567 COL3A1P02461 1466 aaPredicted RBP28.86■■■□□ 2.21
CAPN1-220ENST00000530567 EIF4A2Q14240 407 aaKnown RBP28.85■■■□□ 2.21
CAPN1-220ENST00000530567 PRKRIP1Q9H875 184 aaPredicted RBP28.85■■■□□ 2.21
CAPN1-220ENST00000530567 USP35Q9P2H5 1018 aa28.85■■■□□ 2.21
CAPN1-220ENST00000530567 WNK3Q9BYP7 1800 aa28.84■■■□□ 2.21
CAPN1-220ENST00000530567 NLRP2Q9NX02 1062 aa28.84■■■□□ 2.21
CAPN1-220ENST00000530567 THSD7AQ9UPZ6 1657 aa28.84■■■□□ 2.21
CAPN1-220ENST00000530567 RGS12O14924 1447 aa28.84■■■□□ 2.21
CAPN1-220ENST00000530567 TCP11L2Q8N4U5 519 aa28.83■■■□□ 2.21
CAPN1-220ENST00000530567 NCAPD2Q15021 1401 aa28.82■■■□□ 2.2
CAPN1-220ENST00000530567 ONECUT3O60422 494 aaPredicted RBP28.81■■■□□ 2.2
CAPN1-220ENST00000530567 FAM98CQ17RN3 349 aaKnown RBP28.81■■■□□ 2.2
CAPN1-220ENST00000530567 NBPF6Q5VWK0 638 aa28.81■■■□□ 2.2
CAPN1-220ENST00000530567 BARGINQ6ZT62 677 aa28.81■■■□□ 2.2
CAPN1-220ENST00000530567 NBPF4Q96M43 638 aa28.81■■■□□ 2.2
CAPN1-220ENST00000530567 THRAP3Q9Y2W1 955 aaKnown RBP28.81■■■□□ 2.2
CAPN1-220ENST00000530567 DISP2A7MBM2 1401 aa28.8■■■□□ 2.2
CAPN1-220ENST00000530567 RGPD1P0DJD0 1748 aa28.8■■■□□ 2.2
CAPN1-220ENST00000530567 IL13P35225 146 aa28.78■■■□□ 2.2
CAPN1-220ENST00000530567 MYBBP1AQ9BQG0 1328 aaKnown RBP28.78■■■□□ 2.2
CAPN1-220ENST00000530567 EYA1Q99502 592 aa28.77■■■□□ 2.2
CAPN1-220ENST00000530567 USHBP1Q8N6Y0 703 aa28.76■■■□□ 2.19
CAPN1-220ENST00000530567 PARP4Q9UKK3 1724 aaKnown RBP28.75■■■□□ 2.19
CAPN1-220ENST00000530567 IGSF1Q8N6C5 1336 aa28.75■■■□□ 2.19
CAPN1-220ENST00000530567 SEPT12Q8IYM1 358 aa28.74■■■□□ 2.19
CAPN1-220ENST00000530567 LRRC37A3O60309 1634 aa28.73■■■□□ 2.19
CAPN1-220ENST00000530567 ILDR2Q71H61 639 aa28.73■■■□□ 2.19
CAPN1-220ENST00000530567 BRWD3Q6RI45 1802 aa28.73■■■□□ 2.19
CAPN1-220ENST00000530567 DIAPH1O60610 1272 aaKnown RBP28.72■■■□□ 2.19
CAPN1-220ENST00000530567 MEGF6O75095 1541 aa28.72■■■□□ 2.19
CAPN1-220ENST00000530567 CFAP53Q96M91 514 aa28.71■■■□□ 2.19
CAPN1-220ENST00000530567 ANP32CO43423 234 aa28.69■■■□□ 2.18
CAPN1-220ENST00000530567 IL2RBP14784 551 aa28.69■■■□□ 2.18
CAPN1-220ENST00000530567 CDCA7Q9BWT1 371 aaPredicted RBP28.69■■■□□ 2.18
CAPN1-220ENST00000530567 A0A0G2JS52 829 aa28.67■■■□□ 2.18
CAPN1-220ENST00000530567 MYT1Q01538 1121 aa28.67■■■□□ 2.18
CAPN1-220ENST00000530567 KDRP35968 1356 aa28.66■■■□□ 2.18
CAPN1-220ENST00000530567 OVOS2A0A0G2JMS6 1433 aa28.66■■■□□ 2.18
CAPN1-220ENST00000530567 AEBP1Q8IUX7 1158 aa28.66■■■□□ 2.18
CAPN1-220ENST00000530567 TNS2Q63HR2 1409 aa28.65■■■□□ 2.18
CAPN1-220ENST00000530567 SHANK3Q9BYB0 1731 aa28.63■■■□□ 2.17
CAPN1-220ENST00000530567 SULT6B1Q6IMI4 303 aa28.61■■■□□ 2.17
CAPN1-220ENST00000530567 RAPGEF4Q8WZA2 1011 aa28.61■■■□□ 2.17
CAPN1-220ENST00000530567 PKD1L3Q7Z443 1732 aa28.61■■■□□ 2.17
CAPN1-220ENST00000530567 DDB1Q16531 1140 aa28.6■■■□□ 2.17
CAPN1-220ENST00000530567 U2SURPO15042 1029 aaKnown RBP28.6■■■□□ 2.17
CAPN1-220ENST00000530567 TATP17735 454 aaPredicted RBP28.59■■■□□ 2.17
CAPN1-220ENST00000530567 KRT27Q7Z3Y8 459 aa28.59■■■□□ 2.17
CAPN1-220ENST00000530567 HMOX1P09601 288 aa28.58■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms