RNA–Protein interactions for RNA: ENST00000529813.1

USP47-208, Transcript of ubiquitin specific peptidase 47, human

TSL 2

Gene USP47, Length 3,123 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP47-208	ENST00000529813	ANKRD36B	Q8N2N9	1353 aa		6.3	□□□□□ -1.4
USP47-208	ENST00000529813	EDC4	Q6P2E9	1401 aa	Known RBP	6.3	□□□□□ -1.4
USP47-208	ENST00000529813	ATRN	O75882	1429 aa		6.29	□□□□□ -1.4
USP47-208	ENST00000529813	APBA3	O96018	575 aa		6.29	□□□□□ -1.4
USP47-208	ENST00000529813	PUS7	Q96PZ0	661 aa	Known RBP	6.29	□□□□□ -1.4
USP47-208	ENST00000529813	CPSF1	Q10570	1443 aa	Known RBP	6.29	□□□□□ -1.4
USP47-208	ENST00000529813	EN1	Q05925	392 aa	Predicted RBP	6.29	□□□□□ -1.4
USP47-208	ENST00000529813	RAPGEF4	Q8WZA2	1011 aa		6.29	□□□□□ -1.4
USP47-208	ENST00000529813	SLIT2	O94813	1529 aa		6.29	□□□□□ -1.4
USP47-208	ENST00000529813	SSH2	Q76I76	1423 aa		6.29	□□□□□ -1.4
USP47-208	ENST00000529813	WDR17	Q8IZU2	1322 aa		6.29	□□□□□ -1.4
USP47-208	ENST00000529813	HOXC9	P31274	260 aa		6.28	□□□□□ -1.4
USP47-208	ENST00000529813	BAG6	P46379	1132 aa		6.28	□□□□□ -1.4
USP47-208	ENST00000529813	KAT6B	Q8WYB5	2073 aa		6.28	□□□□□ -1.4
USP47-208	ENST00000529813	DDX10	Q13206	875 aa	Known RBP	6.28	□□□□□ -1.4
USP47-208	ENST00000529813	IP6K1	Q92551	441 aa		6.28	□□□□□ -1.4
USP47-208	ENST00000529813	BRD4	O60885	1362 aa	Predicted RBP	6.28	□□□□□ -1.4
USP47-208	ENST00000529813	AATK	Q6ZMQ8	1374 aa		6.28	□□□□□ -1.4
USP47-208	ENST00000529813	NINL	Q9Y2I6	1382 aa		6.28	□□□□□ -1.4
USP47-208	ENST00000529813	PSD	A5PKW4	1024 aa	Predicted RBP	6.28	□□□□□ -1.4
USP47-208	ENST00000529813	IL2RB	P14784	551 aa		6.27	□□□□□ -1.41
USP47-208	ENST00000529813	FAM196A	Q6ZSG2	479 aa		6.27	□□□□□ -1.41
USP47-208	ENST00000529813	U2SURP	O15042	1029 aa	Known RBP	6.27	□□□□□ -1.41
USP47-208	ENST00000529813	CARD10	Q9BWT7	1032 aa		6.27	□□□□□ -1.41
USP47-208	ENST00000529813	ITSN1	Q15811	1721 aa		6.27	□□□□□ -1.41
USP47-208	ENST00000529813	ERBB3	P21860	1342 aa		6.27	□□□□□ -1.41
USP47-208	ENST00000529813	CPD	O75976	1380 aa		6.27	□□□□□ -1.41
USP47-208	ENST00000529813	CAMTA1	Q9Y6Y1	1673 aa		6.26	□□□□□ -1.41
USP47-208	ENST00000529813	WASHC2A	Q641Q2	1341 aa		6.26	□□□□□ -1.41
USP47-208	ENST00000529813	CD163L1	Q9NR16	1453 aa		6.26	□□□□□ -1.41
USP47-208	ENST00000529813	TAT	P17735	454 aa	Predicted RBP	6.26	□□□□□ -1.41
USP47-208	ENST00000529813	NBPF6	Q5VWK0	638 aa		6.26	□□□□□ -1.41
USP47-208	ENST00000529813	NBPF4	Q96M43	638 aa		6.26	□□□□□ -1.41
USP47-208	ENST00000529813	CRB1	P82279	1406 aa		6.26	□□□□□ -1.41
USP47-208	ENST00000529813	BARGIN	Q6ZT62	677 aa		6.25	□□□□□ -1.41
USP47-208	ENST00000529813	BCL11B	Q9C0K0	894 aa	Predicted RBP	6.25	□□□□□ -1.41
USP47-208	ENST00000529813	POLK	Q9UBT6	870 aa		6.25	□□□□□ -1.41
USP47-208	ENST00000529813	THRAP3	Q9Y2W1	955 aa	Known RBP	6.25	□□□□□ -1.41
USP47-208	ENST00000529813	KCNQ2	O43526	872 aa		6.25	□□□□□ -1.41
USP47-208	ENST00000529813	EZH2	Q15910	746 aa	Known RBP	6.25	□□□□□ -1.41
USP47-208	ENST00000529813	PTF1A	Q7RTS3	328 aa		6.25	□□□□□ -1.41
USP47-208	ENST00000529813	MARCH10	Q8NA82	808 aa	Predicted RBP	6.25	□□□□□ -1.41
USP47-208	ENST00000529813	USP31	Q70CQ4	1352 aa		6.25	□□□□□ -1.41
USP47-208	ENST00000529813	SMG6	Q86US8	1419 aa	Known RBP	6.25	□□□□□ -1.41
USP47-208	ENST00000529813	COL5A2	P05997	1499 aa	Predicted RBP	6.25	□□□□□ -1.41
USP47-208	ENST00000529813	HMOX1	P09601	288 aa		6.24	□□□□□ -1.41
USP47-208	ENST00000529813	MTHFS	P49914	203 aa		6.24	□□□□□ -1.41
USP47-208	ENST00000529813	ZCRB1	Q8TBF4	217 aa	Known RBP	6.24	□□□□□ -1.41
USP47-208	ENST00000529813	CCDC7	Q96M83	1385 aa		6.24	□□□□□ -1.41
USP47-208	ENST00000529813	TRPM3	Q9HCF6	1732 aa	Predicted RBP	6.24	□□□□□ -1.41
USP47-208	ENST00000529813	ONECUT3	O60422	494 aa	Predicted RBP	6.24	□□□□□ -1.41
USP47-208	ENST00000529813	ZEB1	P37275	1124 aa	Predicted RBP	6.24	□□□□□ -1.41
USP47-208	ENST00000529813	CDCA7	Q9BWT1	371 aa	Predicted RBP	6.24	□□□□□ -1.41
USP47-208	ENST00000529813	COL22A1	Q8NFW1	1626 aa	Predicted RBP	6.24	□□□□□ -1.41
USP47-208	ENST00000529813	KCNQ4	P56696	695 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	R3HDM1	Q15032	1099 aa	Known RBP	6.23	□□□□□ -1.41
USP47-208	ENST00000529813	MPRIP	Q6WCQ1	1025 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	PRIM1	P49642	420 aa	Known RBP	6.23	□□□□□ -1.41
USP47-208	ENST00000529813	SULT6B1	Q6IMI4	303 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	CCDC125	Q86Z20	511 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	EYA1	Q99502	592 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	ALS2	Q96Q42	1657 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	SRCAP	Q6ZRS2	3230 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	OVOS2	A0A0J9YW53	1432 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	OVOS2	Q6IE36	1432 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	FLT4	P35916	1363 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	EIF4A2	Q14240	407 aa	Known RBP	6.23	□□□□□ -1.41
USP47-208	ENST00000529813	GLI3	P10071	1580 aa		6.23	□□□□□ -1.41
USP47-208	ENST00000529813	TOPAZ1	Q8N9V7	1692 aa		6.22	□□□□□ -1.41
USP47-208	ENST00000529813	PIK3C2A	O00443	1686 aa		6.22	□□□□□ -1.41
USP47-208	ENST00000529813	COL14A1	Q05707	1796 aa	Known RBP	6.22	□□□□□ -1.41
USP47-208	ENST00000529813	AEBP1	Q8IUX7	1158 aa		6.22	□□□□□ -1.41
USP47-208	ENST00000529813	EP400	Q96L91	3159 aa		6.22	□□□□□ -1.41
USP47-208	ENST00000529813	CDK12	Q9NYV4	1490 aa	Predicted RBP	6.22	□□□□□ -1.41
USP47-208	ENST00000529813	NRK	Q7Z2Y5	1582 aa		6.22	□□□□□ -1.41
USP47-208	ENST00000529813	SENP3-EIF4A1	A0A087X0R7	540 aa		6.21	□□□□□ -1.41
USP47-208	ENST00000529813	AMER1	Q5JTC6	1135 aa	Predicted RBP	6.21	□□□□□ -1.41
USP47-208	ENST00000529813	NBPF14	Q5TI25	921 aa		6.21	□□□□□ -1.41
USP47-208	ENST00000529813	KLHL34	Q8N239	644 aa		6.21	□□□□□ -1.41
USP47-208	ENST00000529813	CFAP53	Q96M91	514 aa		6.21	□□□□□ -1.41
USP47-208	ENST00000529813	BLM	P54132	1417 aa	Predicted RBP	6.21	□□□□□ -1.41
USP47-208	ENST00000529813	DIAPH1	O60610	1272 aa	Known RBP	6.21	□□□□□ -1.42
USP47-208	ENST00000529813	U2AF1L5	P0DN76	240 aa	Predicted RBP	6.21	□□□□□ -1.42
USP47-208	ENST00000529813	U2AF1	Q01081	240 aa	Known RBP eCLIP	6.21	□□□□□ -1.42
USP47-208	ENST00000529813	ZNF530	Q6P9A1	599 aa	Predicted RBP	6.21	□□□□□ -1.42
USP47-208	ENST00000529813	SPG7	Q9UQ90	795 aa		6.21	□□□□□ -1.42
USP47-208	ENST00000529813	PLCH1	Q4KWH8	1693 aa		6.2	□□□□□ -1.42
USP47-208	ENST00000529813	C1orf141	Q5JVX7	400 aa		6.2	□□□□□ -1.42
USP47-208	ENST00000529813	INSR	P06213	1382 aa		6.2	□□□□□ -1.42
USP47-208	ENST00000529813	OVOS2	A0A0G2JMS6	1433 aa		6.2	□□□□□ -1.42
USP47-208	ENST00000529813	SLIT3	O75094	1523 aa		6.2	□□□□□ -1.42
USP47-208	ENST00000529813	PHRF1	Q9P1Y6	1649 aa	Known RBP	6.19	□□□□□ -1.42
USP47-208	ENST00000529813	PLEKHO1	Q53GL0	409 aa	Predicted RBP	6.19	□□□□□ -1.42
USP47-208	ENST00000529813	RBM42	Q9BTD8	480 aa	Known RBP	6.19	□□□□□ -1.42
USP47-208	ENST00000529813	PPP1R1B	Q9UD71	204 aa	Predicted RBP	6.19	□□□□□ -1.42
USP47-208	ENST00000529813	PER1	O15534	1290 aa	Predicted RBP	6.19	□□□□□ -1.42
USP47-208	ENST00000529813	NEFM	P07197	916 aa		6.19	□□□□□ -1.42
USP47-208	ENST00000529813	NUDC	Q9Y266	331 aa		6.19	□□□□□ -1.42
USP47-208	ENST00000529813	NFAT5	O94916	1531 aa		6.19	□□□□□ -1.42
USP47-208	ENST00000529813	TXNRD1	Q16881	649 aa		6.19	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms